RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 SGIP1Q9BQI5 828 aa21.07■□□□□ 0.96
VPS39-203ENST00000561797 ATP6V1AP38606 617 aa21.06■□□□□ 0.96
VPS39-203ENST00000561797 COL23A1Q86Y22 540 aaPredicted RBP21.06■□□□□ 0.96
VPS39-203ENST00000561797 RBM42Q9BTD8 480 aaKnown RBP21.06■□□□□ 0.96
VPS39-203ENST00000561797 MTHFSDQ2M296 383 aaKnown RBP21.05■□□□□ 0.96
VPS39-203ENST00000561797 NFATC2IPQ8NCF5 419 aa21.05■□□□□ 0.96
VPS39-203ENST00000561797 AK7Q96M32 723 aa21.05■□□□□ 0.96
VPS39-203ENST00000561797 ZNF831Q5JPB2 1677 aa21.05■□□□□ 0.96
VPS39-203ENST00000561797 ITPK1Q13572 414 aa21.04■□□□□ 0.96
VPS39-203ENST00000561797 LINC00116Q8NCU8 138 aa21.04■□□□□ 0.96
VPS39-203ENST00000561797 COL5A3P25940 1745 aaPredicted RBP21.04■□□□□ 0.96
VPS39-203ENST00000561797 ARXQ96QS3 562 aa21.03■□□□□ 0.96
VPS39-203ENST00000561797 LGR6Q9HBX8 967 aa21.03■□□□□ 0.96
VPS39-203ENST00000561797 SMIM5Q71RC9 77 aa21.02■□□□□ 0.96
VPS39-203ENST00000561797 FHDC1Q9C0D6 1143 aaPredicted RBP21.02■□□□□ 0.96
VPS39-203ENST00000561797 PHF14O94880 888 aa21.01■□□□□ 0.95
VPS39-203ENST00000561797 POLD1P28340 1107 aa21.01■□□□□ 0.95
VPS39-203ENST00000561797 NUDCQ9Y266 331 aa21.01■□□□□ 0.95
VPS39-203ENST00000561797 ADAMTS7Q9UKP4 1686 aa21.01■□□□□ 0.95
VPS39-203ENST00000561797 MYH14Q7Z406 1995 aaKnown RBP21■□□□□ 0.95
VPS39-203ENST00000561797 RNMTO43148 476 aaKnown RBP21■□□□□ 0.95
VPS39-203ENST00000561797 MSL1Q68DK7 614 aa21■□□□□ 0.95
VPS39-203ENST00000561797 AMIGO3Q86WK7 504 aa21■□□□□ 0.95
VPS39-203ENST00000561797 FLAD1Q8NFF5 587 aa21■□□□□ 0.95
VPS39-203ENST00000561797 SLC4A9Q96Q91 983 aa21■□□□□ 0.95
VPS39-203ENST00000561797 PTCD1O75127 700 aaKnown RBP20.99■□□□□ 0.95
VPS39-203ENST00000561797 DDX10Q13206 875 aaKnown RBP20.99■□□□□ 0.95
VPS39-203ENST00000561797 SLC52A2Q9HAB3 445 aa20.99■□□□□ 0.95
VPS39-203ENST00000561797 TJP1Q07157 1748 aa20.98■□□□□ 0.95
VPS39-203ENST00000561797 GNPATO15228 680 aa20.98■□□□□ 0.95
VPS39-203ENST00000561797 U2AF1L5P0DN76 240 aaPredicted RBP20.98■□□□□ 0.95
VPS39-203ENST00000561797 U2AF1Q01081 240 aaKnown RBP eCLIP20.98■□□□□ 0.95
VPS39-203ENST00000561797 KLHL34Q8N239 644 aa20.98■□□□□ 0.95
VPS39-203ENST00000561797 SYT17Q9BSW7 474 aa20.98■□□□□ 0.95
VPS39-203ENST00000561797 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.97■□□□□ 0.95
VPS39-203ENST00000561797 PRKAR2BP31323 418 aa20.97■□□□□ 0.95
VPS39-203ENST00000561797 MRC1P22897 1456 aa20.96■□□□□ 0.95
VPS39-203ENST00000561797 SIPA1L3O60292 1781 aaPredicted RBP20.96■□□□□ 0.95
VPS39-203ENST00000561797 DCAF8L1A6NGE4 600 aa20.96■□□□□ 0.95
VPS39-203ENST00000561797 GAS2L2Q8NHY3 880 aa20.96■□□□□ 0.95
VPS39-203ENST00000561797 RSPH6AQ9H0K4 717 aa20.96■□□□□ 0.95
VPS39-203ENST00000561797 SSFA2P28290 1259 aa20.95■□□□□ 0.94
VPS39-203ENST00000561797 PHACTR3Q96KR7 559 aa20.95■□□□□ 0.94
VPS39-203ENST00000561797 MAP3K5Q99683 1374 aa20.95■□□□□ 0.94
VPS39-203ENST00000561797 GNAT3A8MTJ3 354 aa20.94■□□□□ 0.94
VPS39-203ENST00000561797 SLC39A6Q13433 755 aa20.94■□□□□ 0.94
VPS39-203ENST00000561797 DLG5Q8TDM6 1919 aa20.94■□□□□ 0.94
VPS39-203ENST00000561797 CICQ96RK0 1608 aaPredicted RBP20.93■□□□□ 0.94
VPS39-203ENST00000561797 UBR2Q8IWV8 1755 aa20.92■□□□□ 0.94
VPS39-203ENST00000561797 C4AP0C0L4 1744 aa20.92■□□□□ 0.94
VPS39-203ENST00000561797 FCHSD2O94868 740 aa20.91■□□□□ 0.94
VPS39-203ENST00000561797 RC3H1Q5TC82 1133 aaKnown RBP20.91■□□□□ 0.94
VPS39-203ENST00000561797 IL17REQ8NFR9 667 aa20.91■□□□□ 0.94
VPS39-203ENST00000561797 RTCBQ9Y3I0 505 aaKnown RBP20.91■□□□□ 0.94
VPS39-203ENST00000561797 CNTNAP4Q9C0A0 1308 aa20.9■□□□□ 0.94
VPS39-203ENST00000561797 TEFQ10587 303 aa20.9■□□□□ 0.94
VPS39-203ENST00000561797 TRAPPC3LQ5T215 181 aa20.89■□□□□ 0.93
VPS39-203ENST00000561797 KCPQ6ZWJ8 1503 aa20.88■□□□□ 0.93
VPS39-203ENST00000561797 RPS6KA4O75676 772 aa20.88■□□□□ 0.93
VPS39-203ENST00000561797 CRKLP46109 303 aaKnown RBP20.88■□□□□ 0.93
VPS39-203ENST00000561797 RALBP1Q15311 655 aa20.88■□□□□ 0.93
VPS39-203ENST00000561797 DNAJC10Q8IXB1 793 aa20.88■□□□□ 0.93
VPS39-203ENST00000561797 ZEB1P37275 1124 aaPredicted RBP20.87■□□□□ 0.93
VPS39-203ENST00000561797 ARHGEF1Q92888 912 aaKnown RBP20.87■□□□□ 0.93
VPS39-203ENST00000561797 TTC5Q8N0Z6 440 aa20.86■□□□□ 0.93
VPS39-203ENST00000561797 NLGN2Q8NFZ4 835 aa20.86■□□□□ 0.93
VPS39-203ENST00000561797 CHD4Q14839 1912 aa20.86■□□□□ 0.93
VPS39-203ENST00000561797 ADRA2BP18089 450 aa20.84■□□□□ 0.93
VPS39-203ENST00000561797 RFC4P35249 363 aa20.84■□□□□ 0.93
VPS39-203ENST00000561797 RTF1Q92541 710 aaKnown RBP20.84■□□□□ 0.93
VPS39-203ENST00000561797 NEFMP07197 916 aa20.83■□□□□ 0.93
VPS39-203ENST00000561797 INTS5Q6P9B9 1019 aaKnown RBP20.83■□□□□ 0.93
VPS39-203ENST00000561797 MCM10Q7L590 875 aa20.83■□□□□ 0.93
VPS39-203ENST00000561797 PELP1Q8IZL8 1130 aaKnown RBP20.83■□□□□ 0.93
VPS39-203ENST00000561797 CEMIPQ8WUJ3 1361 aa20.83■□□□□ 0.92
VPS39-203ENST00000561797 CYP19A1P11511 503 aaPredicted RBP20.82■□□□□ 0.92
VPS39-203ENST00000561797 CCDC87Q9NVE4 849 aa20.82■□□□□ 0.92
VPS39-203ENST00000561797 DCTN1Q14203 1278 aa20.81■□□□□ 0.92
VPS39-203ENST00000561797 GPR162Q16538 588 aa20.81■□□□□ 0.92
VPS39-203ENST00000561797 ZNF790Q6PG37 636 aa20.81■□□□□ 0.92
VPS39-203ENST00000561797 MYBBP1AQ9BQG0 1328 aaKnown RBP20.8■□□□□ 0.92
VPS39-203ENST00000561797 BTBD11A6QL63 1104 aa20.8■□□□□ 0.92
VPS39-203ENST00000561797 MMP10P09238 476 aa20.8■□□□□ 0.92
VPS39-203ENST00000561797 VSIG10Q8N0Z9 540 aa20.8■□□□□ 0.92
VPS39-203ENST00000561797 ZNF496Q96IT1 587 aaPredicted RBP20.8■□□□□ 0.92
VPS39-203ENST00000561797 GYS1P13807 737 aa20.79■□□□□ 0.92
VPS39-203ENST00000561797 YY1P25490 414 aa20.79■□□□□ 0.92
VPS39-203ENST00000561797 NLGN1Q8N2Q7 840 aa20.79■□□□□ 0.92
VPS39-203ENST00000561797 PLEKHF1Q96S99 279 aa20.79■□□□□ 0.92
VPS39-203ENST00000561797 SRP68Q9UHB9 627 aaKnown RBP20.79■□□□□ 0.92
VPS39-203ENST00000561797 CD2APQ9Y5K6 639 aa20.79■□□□□ 0.92
VPS39-203ENST00000561797 HEG1Q9ULI3 1381 aa20.78■□□□□ 0.92
VPS39-203ENST00000561797 KCNQ3O43525 872 aa20.78■□□□□ 0.92
VPS39-203ENST00000561797 KIF13BQ9NQT8 1826 aa20.78■□□□□ 0.92
VPS39-203ENST00000561797 N4BP2Q86UW6 1770 aaPredicted RBP20.77■□□□□ 0.92
VPS39-203ENST00000561797 HTATSF1O43719 755 aaKnown RBP20.77■□□□□ 0.92
VPS39-203ENST00000561797 PNNQ9H307 717 aaKnown RBP20.77■□□□□ 0.92
VPS39-203ENST00000561797 ZBTB1Q9Y2K1 713 aa20.77■□□□□ 0.92
VPS39-203ENST00000561797 SOS1Q07889 1333 aaPredicted RBP20.77■□□□□ 0.91
VPS39-203ENST00000561797 MAPK8IP3Q9UPT6 1336 aa20.77■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms