RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 KDRP35968 1356 aa13.96□□□□□ -0.17
CLK3-205ENST00000561673 LINC00116Q8NCU8 138 aa13.96□□□□□ -0.17
CLK3-205ENST00000561673 AK7Q96M32 723 aa13.96□□□□□ -0.17
CLK3-205ENST00000561673 TUBGCP6Q96RT7 1819 aa13.95□□□□□ -0.18
CLK3-205ENST00000561673 YY1P25490 414 aa13.95□□□□□ -0.18
CLK3-205ENST00000561673 ATP6V1AP38606 617 aa13.95□□□□□ -0.18
CLK3-205ENST00000561673 ITPK1Q13572 414 aa13.95□□□□□ -0.18
CLK3-205ENST00000561673 C1orf141Q5JVX7 400 aa13.95□□□□□ -0.18
CLK3-205ENST00000561673 MSL1Q68DK7 614 aa13.95□□□□□ -0.18
CLK3-205ENST00000561673 SMIM5Q71RC9 77 aa13.95□□□□□ -0.18
CLK3-205ENST00000561673 FLAD1Q8NFF5 587 aa13.95□□□□□ -0.18
CLK3-205ENST00000561673 MAP3K5Q99683 1374 aa13.95□□□□□ -0.18
CLK3-205ENST00000561673 C5P01031 1676 aa13.95□□□□□ -0.18
CLK3-205ENST00000561673 KDM6AO15550 1401 aaPredicted RBP13.94□□□□□ -0.18
CLK3-205ENST00000561673 CABP4P57796 275 aa13.94□□□□□ -0.18
CLK3-205ENST00000561673 NPC1L1Q9UHC9 1359 aa13.94□□□□□ -0.18
CLK3-205ENST00000561673 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.93□□□□□ -0.18
CLK3-205ENST00000561673 DIAPH1O60610 1272 aaKnown RBP13.93□□□□□ -0.18
CLK3-205ENST00000561673 PHF14O94880 888 aa13.93□□□□□ -0.18
CLK3-205ENST00000561673 HMOX1P09601 288 aa13.93□□□□□ -0.18
CLK3-205ENST00000561673 KLHL34Q8N239 644 aa13.93□□□□□ -0.18
CLK3-205ENST00000561673 SLC4A9Q96Q91 983 aa13.93□□□□□ -0.18
CLK3-205ENST00000561673 NFATC2IPQ8NCF5 419 aa13.92□□□□□ -0.18
CLK3-205ENST00000561673 RBM42Q9BTD8 480 aaKnown RBP13.92□□□□□ -0.18
CLK3-205ENST00000561673 C4BP0C0L5 1744 aa13.92□□□□□ -0.18
CLK3-205ENST00000561673 COL24A1Q17RW2 1714 aa13.91□□□□□ -0.18
CLK3-205ENST00000561673 GNPATO15228 680 aa13.91□□□□□ -0.18
CLK3-205ENST00000561673 SSFA2P28290 1259 aa13.91□□□□□ -0.18
CLK3-205ENST00000561673 AKAP4Q5JQC9 854 aa13.91□□□□□ -0.18
CLK3-205ENST00000561673 TAF1LQ8IZX4 1826 aa13.91□□□□□ -0.18
CLK3-205ENST00000561673 NLGN2Q8NFZ4 835 aa13.9□□□□□ -0.18
CLK3-205ENST00000561673 LGR6Q9HBX8 967 aa13.9□□□□□ -0.18
CLK3-205ENST00000561673 PTCD1O75127 700 aaKnown RBP13.89□□□□□ -0.19
CLK3-205ENST00000561673 GPR162Q16538 588 aa13.89□□□□□ -0.19
CLK3-205ENST00000561673 MTHFSDQ2M296 383 aaKnown RBP13.89□□□□□ -0.19
CLK3-205ENST00000561673 RC3H1Q5TC82 1133 aaKnown RBP13.88□□□□□ -0.19
CLK3-205ENST00000561673 U2SURPO15042 1029 aaKnown RBP13.87□□□□□ -0.19
CLK3-205ENST00000561673 SLC52A2Q9HAB3 445 aa13.87□□□□□ -0.19
CLK3-205ENST00000561673 FOXD4L1Q9NU39 408 aa13.87□□□□□ -0.19
CLK3-205ENST00000561673 RNF216Q9NWF9 866 aaPredicted RBP13.87□□□□□ -0.19
CLK3-205ENST00000561673 RTCBQ9Y3I0 505 aaKnown RBP13.87□□□□□ -0.19
CLK3-205ENST00000561673 RNMTO43148 476 aaKnown RBP13.86□□□□□ -0.19
CLK3-205ENST00000561673 TRAPPC3LQ5T215 181 aa13.86□□□□□ -0.19
CLK3-205ENST00000561673 CD2APQ9Y5K6 639 aa13.86□□□□□ -0.19
CLK3-205ENST00000561673 UBR3Q6ZT12 1888 aa13.86□□□□□ -0.19
CLK3-205ENST00000561673 COL3A1P02461 1466 aaPredicted RBP13.86□□□□□ -0.19
CLK3-205ENST00000561673 PELP1Q8IZL8 1130 aaKnown RBP13.85□□□□□ -0.19
CLK3-205ENST00000561673 ARHGEF1Q92888 912 aaKnown RBP13.85□□□□□ -0.19
CLK3-205ENST00000561673 CNTNAP4Q9C0A0 1308 aa13.85□□□□□ -0.19
CLK3-205ENST00000561673 RPS6KA4O75676 772 aa13.84□□□□□ -0.19
CLK3-205ENST00000561673 YBX3P16989 372 aaKnown RBP eCLIP13.83□□□□□ -0.29e-6■■■□□ 18.6
CLK3-205ENST00000561673 PPP2R1AP30153 589 aa13.83□□□□□ -0.2
CLK3-205ENST00000561673 CRKLP46109 303 aaKnown RBP13.83□□□□□ -0.2
CLK3-205ENST00000561673 SLC39A6Q13433 755 aa13.83□□□□□ -0.2
CLK3-205ENST00000561673 CFAP53Q96M91 514 aa13.83□□□□□ -0.2
CLK3-205ENST00000561673 ZNF831Q5JPB2 1677 aa13.82□□□□□ -0.2
CLK3-205ENST00000561673 RFC4P35249 363 aa13.82□□□□□ -0.2
CLK3-205ENST00000561673 MMP10P09238 476 aa13.81□□□□□ -0.2
CLK3-205ENST00000561673 INTS5Q6P9B9 1019 aaKnown RBP13.81□□□□□ -0.2
CLK3-205ENST00000561673 NLGN1Q8N2Q7 840 aa13.81□□□□□ -0.2
CLK3-205ENST00000561673 IL17REQ8NFR9 667 aa13.81□□□□□ -0.2
CLK3-205ENST00000561673 GAS2L2Q8NHY3 880 aa13.81□□□□□ -0.2
CLK3-205ENST00000561673 PHACTR3Q96KR7 559 aa13.81□□□□□ -0.2
CLK3-205ENST00000561673 SCN11AQ9UI33 1791 aa13.81□□□□□ -0.2
CLK3-205ENST00000561673 GNAT3A8MTJ3 354 aa13.8□□□□□ -0.2
CLK3-205ENST00000561673 GYS1P13807 737 aa13.8□□□□□ -0.2
CLK3-205ENST00000561673 DNAJC10Q8IXB1 793 aa13.8□□□□□ -0.2
CLK3-205ENST00000561673 ZNF784Q8NCA9 323 aaPredicted RBP13.8□□□□□ -0.2
CLK3-205ENST00000561673 RSPH6AQ9H0K4 717 aa13.8□□□□□ -0.2
CLK3-205ENST00000561673 NUDCQ9Y266 331 aa13.8□□□□□ -0.2
CLK3-205ENST00000561673 MRC1P22897 1456 aa13.8□□□□□ -0.2
CLK3-205ENST00000561673 GRIN3BO60391 1043 aa13.79□□□□□ -0.2
CLK3-205ENST00000561673 PRKAR2BP31323 418 aa13.79□□□□□ -0.2
CLK3-205ENST00000561673 COL5A3P25940 1745 aaPredicted RBP13.78□□□□□ -0.2
CLK3-205ENST00000561673 U2AF1L5P0DN76 240 aaPredicted RBP13.78□□□□□ -0.2
CLK3-205ENST00000561673 CYP19A1P11511 503 aaPredicted RBP13.78□□□□□ -0.2
CLK3-205ENST00000561673 U2AF1Q01081 240 aaKnown RBP eCLIP13.78□□□□□ -0.2
CLK3-205ENST00000561673 CCDC87Q9NVE4 849 aa13.78□□□□□ -0.2
CLK3-205ENST00000561673 SRP68Q9UHB9 627 aaKnown RBP13.78□□□□□ -0.2
CLK3-205ENST00000561673 TEFQ10587 303 aa13.77□□□□□ -0.21
CLK3-205ENST00000561673 MYH14Q7Z406 1995 aaKnown RBP13.77□□□□□ -0.21
CLK3-205ENST00000561673 VSIG10Q8N0Z9 540 aa13.77□□□□□ -0.21
CLK3-205ENST00000561673 ADAMTS7Q9UKP4 1686 aa13.76□□□□□ -0.21
CLK3-205ENST00000561673 KCPQ6ZWJ8 1503 aa13.76□□□□□ -0.21
CLK3-205ENST00000561673 FCHSD2O94868 740 aa13.76□□□□□ -0.21
CLK3-205ENST00000561673 FKBP8Q14318 412 aa13.76□□□□□ -0.21
CLK3-205ENST00000561673 TTC5Q8N0Z6 440 aa13.76□□□□□ -0.21
CLK3-205ENST00000561673 WWC3Q9ULE0 1092 aa13.76□□□□□ -0.21
CLK3-205ENST00000561673 TJP1Q07157 1748 aa13.76□□□□□ -0.21
CLK3-205ENST00000561673 SOS1Q07889 1333 aaPredicted RBP13.75□□□□□ -0.21
CLK3-205ENST00000561673 USP42Q9H9J4 1324 aaKnown RBP13.75□□□□□ -0.21
CLK3-205ENST00000561673 ZNF790Q6PG37 636 aa13.75□□□□□ -0.21
CLK3-205ENST00000561673 PARP3Q9Y6F1 533 aa13.75□□□□□ -0.21
CLK3-205ENST00000561673 CEMIPQ8WUJ3 1361 aa13.74□□□□□ -0.21
CLK3-205ENST00000561673 ZPR1O75312 459 aa13.74□□□□□ -0.21
CLK3-205ENST00000561673 TGFB2P61812 414 aa13.74□□□□□ -0.21
CLK3-205ENST00000561673 ZNF496Q96IT1 587 aaPredicted RBP13.74□□□□□ -0.21
CLK3-205ENST00000561673 ZBTB1Q9Y2K1 713 aa13.74□□□□□ -0.21
CLK3-205ENST00000561673 CICQ96RK0 1608 aaPredicted RBP13.74□□□□□ -0.21
CLK3-205ENST00000561673 A0A0G2JLW4 131 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms