RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 RBM42Q9BTD8 480 aaKnown RBP13.9□□□□□ -0.18
LDLR-214ENST00000560628 TUBGCP6Q96RT7 1819 aa13.9□□□□□ -0.18
LDLR-214ENST00000560628 MAP3K5Q99683 1374 aa13.89□□□□□ -0.19
LDLR-214ENST00000560628 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.89□□□□□ -0.19
LDLR-214ENST00000560628 C1orf141Q5JVX7 400 aa13.89□□□□□ -0.19
LDLR-214ENST00000560628 QSER1Q2KHR3 1735 aa13.88□□□□□ -0.19
LDLR-214ENST00000560628 GNPATO15228 680 aa13.87□□□□□ -0.19
LDLR-214ENST00000560628 HMOX1P09601 288 aa13.87□□□□□ -0.19
LDLR-214ENST00000560628 SLC4A9Q96Q91 983 aa13.87□□□□□ -0.19
LDLR-214ENST00000560628 C5P01031 1676 aa13.86□□□□□ -0.19
LDLR-214ENST00000560628 NFATC2IPQ8NCF5 419 aa13.86□□□□□ -0.19
LDLR-214ENST00000560628 KDM6AO15550 1401 aaPredicted RBP13.85□□□□□ -0.19
LDLR-214ENST00000560628 DIAPH1O60610 1272 aaKnown RBP13.85□□□□□ -0.19
LDLR-214ENST00000560628 PTCD1O75127 700 aaKnown RBP13.85□□□□□ -0.19
LDLR-214ENST00000560628 SSFA2P28290 1259 aa13.85□□□□□ -0.19
LDLR-214ENST00000560628 PLEKHG2Q9H7P9 1386 aa13.84□□□□□ -0.19
LDLR-214ENST00000560628 C4BP0C0L5 1744 aa13.84□□□□□ -0.19
LDLR-214ENST00000560628 TAF1LQ8IZX4 1826 aa13.84□□□□□ -0.19
LDLR-214ENST00000560628 KDRP35968 1356 aa13.83□□□□□ -0.19
LDLR-214ENST00000560628 AKAP4Q5JQC9 854 aa13.83□□□□□ -0.2
LDLR-214ENST00000560628 LGR6Q9HBX8 967 aa13.83□□□□□ -0.2
LDLR-214ENST00000560628 COL24A1Q17RW2 1714 aa13.82□□□□□ -0.2
LDLR-214ENST00000560628 YBX3P16989 372 aaKnown RBP eCLIP13.82□□□□□ -0.23e-8■□□□□ 11
LDLR-214ENST00000560628 TRAPPC3LQ5T215 181 aa13.82□□□□□ -0.2
LDLR-214ENST00000560628 ZNF784Q8NCA9 323 aaPredicted RBP13.82□□□□□ -0.2
LDLR-214ENST00000560628 RTCBQ9Y3I0 505 aaKnown RBP13.82□□□□□ -0.2
LDLR-214ENST00000560628 CD2APQ9Y5K6 639 aa13.82□□□□□ -0.2
LDLR-214ENST00000560628 U2SURPO15042 1029 aaKnown RBP13.81□□□□□ -0.2
LDLR-214ENST00000560628 MTHFSDQ2M296 383 aaKnown RBP13.81□□□□□ -0.2
LDLR-214ENST00000560628 RC3H1Q5TC82 1133 aaKnown RBP13.81□□□□□ -0.2
LDLR-214ENST00000560628 ARHGEF1Q92888 912 aaKnown RBP13.81□□□□□ -0.2
LDLR-214ENST00000560628 WWC3Q9ULE0 1092 aa13.81□□□□□ -0.2
LDLR-214ENST00000560628 RNMTO43148 476 aaKnown RBP13.8□□□□□ -0.2
LDLR-214ENST00000560628 UBR3Q6ZT12 1888 aa13.79□□□□□ -0.2
LDLR-214ENST00000560628 RPS6KA4O75676 772 aa13.79□□□□□ -0.2
LDLR-214ENST00000560628 MMP10P09238 476 aa13.79□□□□□ -0.2
LDLR-214ENST00000560628 RFC4P35249 363 aa13.79□□□□□ -0.2
LDLR-214ENST00000560628 SLC39A6Q13433 755 aa13.79□□□□□ -0.2
LDLR-214ENST00000560628 SLC52A2Q9HAB3 445 aa13.79□□□□□ -0.2
LDLR-214ENST00000560628 NPC1L1Q9UHC9 1359 aa13.79□□□□□ -0.2
LDLR-214ENST00000560628 GRIN3BO60391 1043 aa13.78□□□□□ -0.2
LDLR-214ENST00000560628 CRKLP46109 303 aaKnown RBP13.78□□□□□ -0.2
LDLR-214ENST00000560628 CNTNAP4Q9C0A0 1308 aa13.78□□□□□ -0.2
LDLR-214ENST00000560628 NLGN1Q8N2Q7 840 aa13.77□□□□□ -0.21
LDLR-214ENST00000560628 ADRA2BP18089 450 aa13.76□□□□□ -0.21
LDLR-214ENST00000560628 DNAJC10Q8IXB1 793 aa13.76□□□□□ -0.21
LDLR-214ENST00000560628 GYS1P13807 737 aa13.75□□□□□ -0.21
LDLR-214ENST00000560628 INTS5Q6P9B9 1019 aaKnown RBP13.75□□□□□ -0.21
LDLR-214ENST00000560628 SRP68Q9UHB9 627 aaKnown RBP13.75□□□□□ -0.21
LDLR-214ENST00000560628 CFAP53Q96M91 514 aa13.74□□□□□ -0.21
LDLR-214ENST00000560628 UTRNP46939 3433 aa13.73□□□□□ -0.21
LDLR-214ENST00000560628 CHD4Q14839 1912 aa13.73□□□□□ -0.21
LDLR-214ENST00000560628 PPP2R1AP30153 589 aa13.73□□□□□ -0.21
LDLR-214ENST00000560628 IL17REQ8NFR9 667 aa13.73□□□□□ -0.21
LDLR-214ENST00000560628 PHACTR3Q96KR7 559 aa13.73□□□□□ -0.21
LDLR-214ENST00000560628 PARP3Q9Y6F1 533 aa13.73□□□□□ -0.21
LDLR-214ENST00000560628 COL3A1P02461 1466 aaPredicted RBP13.73□□□□□ -0.21
LDLR-214ENST00000560628 A0A0G2JLW4 131 aa13.72□□□□□ -0.21
LDLR-214ENST00000560628 GNAT3A8MTJ3 354 aa13.72□□□□□ -0.21
LDLR-214ENST00000560628 CYP19A1P11511 503 aaPredicted RBP13.72□□□□□ -0.21
LDLR-214ENST00000560628 PRKAR2BP31323 418 aa13.72□□□□□ -0.21
LDLR-214ENST00000560628 FKBP8Q14318 412 aa13.72□□□□□ -0.21
LDLR-214ENST00000560628 GAS2L2Q8NHY3 880 aa13.72□□□□□ -0.21
LDLR-214ENST00000560628 CCDC87Q9NVE4 849 aa13.72□□□□□ -0.21
LDLR-214ENST00000560628 SCN11AQ9UI33 1791 aa13.71□□□□□ -0.21
LDLR-214ENST00000560628 MYH14Q7Z406 1995 aaKnown RBP13.71□□□□□ -0.21
LDLR-214ENST00000560628 U2AF1L5P0DN76 240 aaPredicted RBP13.71□□□□□ -0.21
LDLR-214ENST00000560628 U2AF1Q01081 240 aaKnown RBP eCLIP13.71□□□□□ -0.21
LDLR-214ENST00000560628 NUDCQ9Y266 331 aa13.71□□□□□ -0.21
LDLR-214ENST00000560628 ZNF831Q5JPB2 1677 aa13.7□□□□□ -0.22
LDLR-214ENST00000560628 TEFQ10587 303 aa13.7□□□□□ -0.22
LDLR-214ENST00000560628 TTC5Q8N0Z6 440 aa13.7□□□□□ -0.22
LDLR-214ENST00000560628 RSPH6AQ9H0K4 717 aa13.7□□□□□ -0.22
LDLR-214ENST00000560628 USP42Q9H9J4 1324 aaKnown RBP13.69□□□□□ -0.22
LDLR-214ENST00000560628 ZPR1O75312 459 aa13.69□□□□□ -0.22
LDLR-214ENST00000560628 DPEP1P16444 411 aa13.69□□□□□ -0.22
LDLR-214ENST00000560628 CANXP27824 592 aaKnown RBP13.69□□□□□ -0.22
LDLR-214ENST00000560628 TGFB2P61812 414 aa13.69□□□□□ -0.22
LDLR-214ENST00000560628 USPL1Q5W0Q7 1092 aa13.69□□□□□ -0.22
LDLR-214ENST00000560628 COL5A3P25940 1745 aaPredicted RBP13.69□□□□□ -0.22
LDLR-214ENST00000560628 SOS1Q07889 1333 aaPredicted RBP13.68□□□□□ -0.22
LDLR-214ENST00000560628 DDR1Q08345 913 aa13.68□□□□□ -0.22
LDLR-214ENST00000560628 VSIG10Q8N0Z9 540 aa13.68□□□□□ -0.22
LDLR-214ENST00000560628 ZNF496Q96IT1 587 aaPredicted RBP13.68□□□□□ -0.22
LDLR-214ENST00000560628 BCS1LQ9Y276 419 aa13.68□□□□□ -0.22
LDLR-214ENST00000560628 ZBTB1Q9Y2K1 713 aa13.68□□□□□ -0.22
LDLR-214ENST00000560628 CICQ96RK0 1608 aaPredicted RBP13.68□□□□□ -0.22
LDLR-214ENST00000560628 MRC1P22897 1456 aa13.67□□□□□ -0.22
LDLR-214ENST00000560628 KCNQ3O43525 872 aa13.67□□□□□ -0.22
LDLR-214ENST00000560628 STARD3NLO95772 234 aa13.67□□□□□ -0.22
LDLR-214ENST00000560628 TM4SF1P30408 202 aa13.67□□□□□ -0.22
LDLR-214ENST00000560628 ZNF790Q6PG37 636 aa13.67□□□□□ -0.22
LDLR-214ENST00000560628 TJP1Q07157 1748 aa13.67□□□□□ -0.22
LDLR-214ENST00000560628 KCPQ6ZWJ8 1503 aa13.66□□□□□ -0.22
LDLR-214ENST00000560628 GIGYF1O75420 1035 aaPredicted RBP13.66□□□□□ -0.22
LDLR-214ENST00000560628 C1QTNF8P60827 252 aa13.66□□□□□ -0.22
LDLR-214ENST00000560628 ZNF526Q8TF50 670 aaPredicted RBP13.66□□□□□ -0.22
LDLR-214ENST00000560628 PXDNLA1KZ92 1463 aa13.66□□□□□ -0.22
LDLR-214ENST00000560628 GOLGB1Q14789 3259 aaKnown RBP13.66□□□□□ -0.22
LDLR-214ENST00000560628 BTBD11A6QL63 1104 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms