RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 BTBD11A6QL63 1104 aa17.69■□□□□ 0.42
CARMIL3-203ENST00000560349 AKAP4Q5JQC9 854 aa17.69■□□□□ 0.42
CARMIL3-203ENST00000560349 STRCQ7RTU9 1775 aa17.68■□□□□ 0.42
CARMIL3-203ENST00000560349 PRAMEF22A3QJZ6 481 aa17.68■□□□□ 0.42
CARMIL3-203ENST00000560349 CCDC30Q5VVM6 783 aa17.68■□□□□ 0.42
CARMIL3-203ENST00000560349 DCCP43146 1447 aa17.68■□□□□ 0.42
CARMIL3-203ENST00000560349 TNS3Q68CZ2 1445 aa17.67■□□□□ 0.42
CARMIL3-203ENST00000560349 XIRP1Q702N8 1843 aaKnown RBP17.67■□□□□ 0.42
CARMIL3-203ENST00000560349 SPATA31A3Q5VYP0 1347 aa17.67■□□□□ 0.42
CARMIL3-203ENST00000560349 PHRF1Q9P1Y6 1649 aaKnown RBP17.67■□□□□ 0.42
CARMIL3-203ENST00000560349 RNMTO43148 476 aaKnown RBP17.66■□□□□ 0.42
CARMIL3-203ENST00000560349 EIF4A1P60842 406 aaKnown RBP17.66■□□□□ 0.42
CARMIL3-203ENST00000560349 ATP10DQ9P241 1426 aa17.66■□□□□ 0.42
CARMIL3-203ENST00000560349 RAPGEF4Q8WZA2 1011 aa17.65■□□□□ 0.42
CARMIL3-203ENST00000560349 SLAIN2Q9P270 581 aa17.65■□□□□ 0.42
CARMIL3-203ENST00000560349 CHPF2Q9P2E5 772 aa17.65■□□□□ 0.42
CARMIL3-203ENST00000560349 CEP85Q6P2H3 762 aa17.65■□□□□ 0.42
CARMIL3-203ENST00000560349 CHMP4BQ9H444 224 aaKnown RBP17.65■□□□□ 0.42
CARMIL3-203ENST00000560349 SLC39A6Q13433 755 aa17.65■□□□□ 0.42
CARMIL3-203ENST00000560349 AMOTQ4VCS5 1084 aa17.65■□□□□ 0.42
CARMIL3-203ENST00000560349 SMARCA5O60264 1052 aaPredicted RBP17.64■□□□□ 0.41
CARMIL3-203ENST00000560349 MFAP1P55081 439 aaKnown RBP17.64■□□□□ 0.41
CARMIL3-203ENST00000560349 C16orf71Q8IYS4 520 aaPredicted RBP17.64■□□□□ 0.41
CARMIL3-203ENST00000560349 MEGF6O75095 1541 aa17.63■□□□□ 0.41
CARMIL3-203ENST00000560349 FAM208AQ9UK61 1670 aaKnown RBP17.63■□□□□ 0.41
CARMIL3-203ENST00000560349 OTUD7AQ8TE49 926 aaPredicted RBP17.63■□□□□ 0.41
CARMIL3-203ENST00000560349 GCC1Q96CN9 775 aa17.63■□□□□ 0.41
CARMIL3-203ENST00000560349 VIRMAQ69YN4 1812 aaKnown RBP17.62■□□□□ 0.41
CARMIL3-203ENST00000560349 ANKRD44Q8N8A2 993 aa17.62■□□□□ 0.41
CARMIL3-203ENST00000560349 PRDM11Q9NQV5 511 aa17.61■□□□□ 0.41
CARMIL3-203ENST00000560349 NCAPD2Q15021 1401 aa17.61■□□□□ 0.41
CARMIL3-203ENST00000560349 NCOA3Q9Y6Q9 1424 aa17.61■□□□□ 0.41
CARMIL3-203ENST00000560349 PROSER3Q2NL68 480 aa17.61■□□□□ 0.41
CARMIL3-203ENST00000560349 DDRGK1Q96HY6 314 aa17.6■□□□□ 0.41
CARMIL3-203ENST00000560349 TATP17735 454 aaPredicted RBP17.6■□□□□ 0.41
CARMIL3-203ENST00000560349 CCT4P50991 539 aaKnown RBP17.6■□□□□ 0.41
CARMIL3-203ENST00000560349 LMO7Q8WWI1 1683 aa17.59■□□□□ 0.41
CARMIL3-203ENST00000560349 NFATC2IPQ8NCF5 419 aa17.59■□□□□ 0.41
CARMIL3-203ENST00000560349 USP35Q9P2H5 1018 aa17.59■□□□□ 0.41
CARMIL3-203ENST00000560349 DCTPP1Q9H773 170 aa17.58■□□□□ 0.41
CARMIL3-203ENST00000560349 DAXXQ9UER7 740 aaPredicted RBP17.58■□□□□ 0.41
CARMIL3-203ENST00000560349 EXOC6BQ9Y2D4 811 aa17.58■□□□□ 0.41
CARMIL3-203ENST00000560349 PIP4K2AP48426 406 aaPredicted RBP17.58■□□□□ 0.4
CARMIL3-203ENST00000560349 STRN4Q9NRL3 753 aa17.58■□□□□ 0.4
CARMIL3-203ENST00000560349 BABAM1Q9NWV8 329 aa17.58■□□□□ 0.4
CARMIL3-203ENST00000560349 PI4KAP2A4QPH2 592 aa17.57■□□□□ 0.4
CARMIL3-203ENST00000560349 PI4KAP1Q8N8J0 262 aa17.57■□□□□ 0.4
CARMIL3-203ENST00000560349 LRRFIP2Q9Y608 721 aaKnown RBP17.57■□□□□ 0.4
CARMIL3-203ENST00000560349 PNMA6EA0A0J9YXQ4 647 aa17.57■□□□□ 0.4
CARMIL3-203ENST00000560349 CYP27B1O15528 508 aa17.57■□□□□ 0.4
CARMIL3-203ENST00000560349 UPF2Q9HAU5 1272 aaKnown RBP17.57■□□□□ 0.4
CARMIL3-203ENST00000560349 KDM6AO15550 1401 aaPredicted RBP17.57■□□□□ 0.4
CARMIL3-203ENST00000560349 PHKG2P15735 406 aa17.56■□□□□ 0.4
CARMIL3-203ENST00000560349 GIGYF1O75420 1035 aaPredicted RBP17.56■□□□□ 0.4
CARMIL3-203ENST00000560349 RPAP2Q8IXW5 612 aaPredicted RBP17.56■□□□□ 0.4
CARMIL3-203ENST00000560349 COL18A1P39060 1754 aa17.56■□□□□ 0.4
CARMIL3-203ENST00000560349 GNAI2P04899 355 aa17.55■□□□□ 0.4
CARMIL3-203ENST00000560349 AIMP1Q12904 312 aaKnown RBP17.55■□□□□ 0.4
CARMIL3-203ENST00000560349 TSHZ3Q63HK5 1081 aa17.55■□□□□ 0.4
CARMIL3-203ENST00000560349 TOM1L2Q6ZVM7 507 aa17.55■□□□□ 0.4
CARMIL3-203ENST00000560349 KDM3BQ7LBC6 1761 aa17.55■□□□□ 0.4
CARMIL3-203ENST00000560349 CAMTA1Q9Y6Y1 1673 aa17.55■□□□□ 0.4
CARMIL3-203ENST00000560349 TBC1D32Q96NH3 1257 aa17.55■□□□□ 0.4
CARMIL3-203ENST00000560349 USP44Q9H0E7 712 aa17.55■□□□□ 0.4
CARMIL3-203ENST00000560349 GSPT1P15170 499 aaKnown RBP17.55■□□□□ 0.4
CARMIL3-203ENST00000560349 PLEKHM2Q8IWE5 1019 aa17.54■□□□□ 0.4
CARMIL3-203ENST00000560349 SPG7Q9UQ90 795 aa17.54■□□□□ 0.4
CARMIL3-203ENST00000560349 SOS2Q07890 1332 aaPredicted RBP17.54■□□□□ 0.4
CARMIL3-203ENST00000560349 NBPF7P0C2Y1 421 aaPredicted RBP17.53■□□□□ 0.4
CARMIL3-203ENST00000560349 MYL6BP14649 208 aa17.53■□□□□ 0.4
CARMIL3-203ENST00000560349 SLC52A2Q9HAB3 445 aa17.53■□□□□ 0.4
CARMIL3-203ENST00000560349 BMP2KLQ5H9B9 411 aa17.52■□□□□ 0.4
CARMIL3-203ENST00000560349 ZNF790Q6PG37 636 aa17.52■□□□□ 0.4
CARMIL3-203ENST00000560349 UBTFL1P0CB47 393 aaPredicted RBP17.52■□□□□ 0.39
CARMIL3-203ENST00000560349 IFNL2Q8IZJ0 200 aa17.52■□□□□ 0.39
CARMIL3-203ENST00000560349 C22orf23Q9BZE7 217 aa17.52■□□□□ 0.39
CARMIL3-203ENST00000560349 CRYBG1Q9Y4K1 1723 aa17.52■□□□□ 0.39
CARMIL3-203ENST00000560349 DNAAF4Q8WXU2 420 aa17.51■□□□□ 0.39
CARMIL3-203ENST00000560349 ZNF496Q96IT1 587 aaPredicted RBP17.51■□□□□ 0.39
CARMIL3-203ENST00000560349 SRCIN1Q9C0H9 1055 aa17.51■□□□□ 0.39
CARMIL3-203ENST00000560349 ADCY9O60503 1353 aa17.51■□□□□ 0.39
CARMIL3-203ENST00000560349 LARP1Q6PKG0 1096 aaKnown RBP17.51■□□□□ 0.39
CARMIL3-203ENST00000560349 SPRYD3Q8NCJ5 442 aa17.51■□□□□ 0.39
CARMIL3-203ENST00000560349 CPDO75976 1380 aa17.5■□□□□ 0.39
CARMIL3-203ENST00000560349 GNAI3P08754 354 aa17.5■□□□□ 0.39
CARMIL3-203ENST00000560349 CWF19L2Q2TBE0 894 aaKnown RBP17.5■□□□□ 0.39
CARMIL3-203ENST00000560349 TBC1D9Q6ZT07 1266 aa17.5■□□□□ 0.39
CARMIL3-203ENST00000560349 DBF4Q9UBU7 674 aaPredicted RBP17.5■□□□□ 0.39
CARMIL3-203ENST00000560349 MAP3K2Q9Y2U5 619 aa17.5■□□□□ 0.39
CARMIL3-203ENST00000560349 SOS1Q07889 1333 aaPredicted RBP17.5■□□□□ 0.39
CARMIL3-203ENST00000560349 EIF5BO60841 1220 aaKnown RBP17.5■□□□□ 0.39
CARMIL3-203ENST00000560349 HMMRO75330 724 aa17.5■□□□□ 0.39
CARMIL3-203ENST00000560349 HOXB7P09629 217 aa17.49■□□□□ 0.39
CARMIL3-203ENST00000560349 DDX54Q8TDD1 881 aaKnown RBP17.49■□□□□ 0.39
CARMIL3-203ENST00000560349 BEND3Q5T5X7 828 aa17.49■□□□□ 0.39
CARMIL3-203ENST00000560349 WDR17Q8IZU2 1322 aa17.48■□□□□ 0.39
CARMIL3-203ENST00000560349 SLKQ9H2G2 1235 aaPredicted RBP17.48■□□□□ 0.39
CARMIL3-203ENST00000560349 NFKBIBQ15653 356 aa17.48■□□□□ 0.39
CARMIL3-203ENST00000560349 USP16Q9Y5T5 823 aa17.47■□□□□ 0.39
CARMIL3-203ENST00000560349 IL1RAPL2Q9NP60 686 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms