RNA–Protein interactions for RNA: ENST00000560005.6

PSEN1-225, Transcript of presenilin 1, humanhuman

TSL 3

Gene PSEN1, Length 699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-225ENST00000560005 ATP6V1AP38606 617 aa28.24■■■□□ 2.11
PSEN1-225ENST00000560005 KIAA1551Q9HCM1 1747 aa28.23■■■□□ 2.11
PSEN1-225ENST00000560005 TOMM70O94826 608 aa28.22■■■□□ 2.11
PSEN1-225ENST00000560005 BCS1LQ9Y276 419 aa28.22■■■□□ 2.11
PSEN1-225ENST00000560005 KIF13BQ9NQT8 1826 aa28.22■■■□□ 2.11
PSEN1-225ENST00000560005 N4BP2Q86UW6 1770 aaPredicted RBP28.22■■■□□ 2.11
PSEN1-225ENST00000560005 PPM1GO15355 546 aaPredicted RBP28.21■■■□□ 2.11
PSEN1-225ENST00000560005 A0A0G2JLW4 131 aa28.2■■■□□ 2.1
PSEN1-225ENST00000560005 DNAJC5GQ8N7S2 189 aa28.2■■■□□ 2.1
PSEN1-225ENST00000560005 TGFB2P61812 414 aa28.19■■■□□ 2.1
PSEN1-225ENST00000560005 ATG3Q9NT62 314 aa28.19■■■□□ 2.1
PSEN1-225ENST00000560005 ARHGAP27Q6ZUM4 889 aa28.17■■■□□ 2.1
PSEN1-225ENST00000560005 NMRK2Q9NPI5 230 aa28.17■■■□□ 2.1
PSEN1-225ENST00000560005 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.17■■■□□ 2.16e-6■□□□□ 8.9
PSEN1-225ENST00000560005 C10orf71Q711Q0 1435 aa28.17■■■□□ 2.1
PSEN1-225ENST00000560005 PHKG2P15735 406 aa28.16■■■□□ 2.1
PSEN1-225ENST00000560005 EIF4G2P78344 907 aaKnown RBP eCLIP28.16■■■□□ 2.1
PSEN1-225ENST00000560005 TRAPPC3LQ5T215 181 aa28.16■■■□□ 2.1
PSEN1-225ENST00000560005 IFNL2Q8IZJ0 200 aa28.16■■■□□ 2.1
PSEN1-225ENST00000560005 EYA1Q99502 592 aa28.16■■■□□ 2.1
PSEN1-225ENST00000560005 CARD14Q9BXL6 1004 aa28.16■■■□□ 2.1
PSEN1-225ENST00000560005 NLGN1Q8N2Q7 840 aa28.15■■■□□ 2.1
PSEN1-225ENST00000560005 RTCBQ9Y3I0 505 aaKnown RBP28.15■■■□□ 2.1
PSEN1-225ENST00000560005 ANKRD26Q9UPS8 1709 aa28.14■■■□□ 2.1
PSEN1-225ENST00000560005 DPEP1P16444 411 aa28.13■■■□□ 2.09
PSEN1-225ENST00000560005 WASHC2AQ641Q2 1341 aa28.13■■■□□ 2.09
PSEN1-225ENST00000560005 KDRP35968 1356 aa28.12■■■□□ 2.09
PSEN1-225ENST00000560005 FCHSD2O94868 740 aa28.12■■■□□ 2.09
PSEN1-225ENST00000560005 CCDC87Q9NVE4 849 aa28.12■■■□□ 2.09
PSEN1-225ENST00000560005 CDCA8Q53HL2 280 aa28.11■■■□□ 2.09
PSEN1-225ENST00000560005 C4AP0C0L4 1744 aa28.1■■■□□ 2.09
PSEN1-225ENST00000560005 ARHGEF1Q92888 912 aaKnown RBP28.1■■■□□ 2.09
PSEN1-225ENST00000560005 SLC4A9Q96Q91 983 aa28.1■■■□□ 2.09
PSEN1-225ENST00000560005 WDR90Q96KV7 1748 aa28.09■■■□□ 2.09
PSEN1-225ENST00000560005 BRCA1P38398 1863 aaKnown RBP28.08■■■□□ 2.09
PSEN1-225ENST00000560005 GYS1P13807 737 aa28.08■■■□□ 2.09
PSEN1-225ENST00000560005 ADRA2BP18089 450 aa28.08■■■□□ 2.09
PSEN1-225ENST00000560005 RBM46Q8TBY0 533 aaKnown RBP28.08■■■□□ 2.09
PSEN1-225ENST00000560005 RBM42Q9BTD8 480 aaKnown RBP28.08■■■□□ 2.09
PSEN1-225ENST00000560005 C9orf131Q5VYM1 1079 aa28.07■■■□□ 2.08
PSEN1-225ENST00000560005 PARP3Q9Y6F1 533 aa28.07■■■□□ 2.08
PSEN1-225ENST00000560005 RFC4P35249 363 aa28.06■■■□□ 2.08
PSEN1-225ENST00000560005 HTRA3P83110 453 aa28.06■■■□□ 2.08
PSEN1-225ENST00000560005 C16orf71Q8IYS4 520 aaPredicted RBP28.06■■■□□ 2.08
PSEN1-225ENST00000560005 COL5A3P25940 1745 aaPredicted RBP28.05■■■□□ 2.08
PSEN1-225ENST00000560005 ZNF831Q5JPB2 1677 aa28.05■■■□□ 2.08
PSEN1-225ENST00000560005 RC3H1Q5TC82 1133 aaKnown RBP28.05■■■□□ 2.08
PSEN1-225ENST00000560005 DIEXFQ68CQ4 756 aaKnown RBP28.05■■■□□ 2.08
PSEN1-225ENST00000560005 PLEKHG2Q9H7P9 1386 aa28.04■■■□□ 2.08
PSEN1-225ENST00000560005 CNTNAP4Q9C0A0 1308 aa28.04■■■□□ 2.08
PSEN1-225ENST00000560005 KCNA3P22001 575 aa28.04■■■□□ 2.08
PSEN1-225ENST00000560005 RPS6KA4O75676 772 aa28.03■■■□□ 2.08
PSEN1-225ENST00000560005 POLKQ9UBT6 870 aa28.03■■■□□ 2.08
PSEN1-225ENST00000560005 ARFGEF1Q9Y6D6 1849 aa28.02■■■□□ 2.08
PSEN1-225ENST00000560005 ERVV-2B6SEH9 535 aa28.02■■■□□ 2.08
PSEN1-225ENST00000560005 HSPA5P11021 654 aaKnown RBP28.02■■■□□ 2.08
PSEN1-225ENST00000560005 KLRG1Q96E93 195 aa28.02■■■□□ 2.08
PSEN1-225ENST00000560005 PCNTO95613 3336 aa28.02■■■□□ 2.08
PSEN1-225ENST00000560005 EIF4A2Q14240 407 aaKnown RBP28.01■■■□□ 2.07
PSEN1-225ENST00000560005 KCPQ6ZWJ8 1503 aa28.01■■■□□ 2.07
PSEN1-225ENST00000560005 PIM2Q9P1W9 311 aa28■■■□□ 2.07
PSEN1-225ENST00000560005 FSTL1Q12841 308 aa27.99■■■□□ 2.07
PSEN1-225ENST00000560005 COL13A1Q5TAT6 717 aaPredicted RBP27.99■■■□□ 2.07
PSEN1-225ENST00000560005 MYH14Q7Z406 1995 aaKnown RBP27.99■■■□□ 2.07
PSEN1-225ENST00000560005 KDM2BQ8NHM5 1336 aa27.98■■■□□ 2.07
PSEN1-225ENST00000560005 JMYQ8N9B5 988 aa27.98■■■□□ 2.07
PSEN1-225ENST00000560005 DCAF5Q96JK2 942 aa27.98■■■□□ 2.07
PSEN1-225ENST00000560005 DALRD3Q5D0E6 543 aaKnown RBP27.97■■■□□ 2.07
PSEN1-225ENST00000560005 RNF181Q9P0P0 153 aa27.97■■■□□ 2.07
PSEN1-225ENST00000560005 HSP90AB1P08238 724 aaKnown RBP27.96■■■□□ 2.07
PSEN1-225ENST00000560005 TNNT2P45379 298 aaPredicted RBP27.96■■■□□ 2.07
PSEN1-225ENST00000560005 KDM6AO15550 1401 aaPredicted RBP27.95■■■□□ 2.07
PSEN1-225ENST00000560005 SRP68Q9UHB9 627 aaKnown RBP27.95■■■□□ 2.06
PSEN1-225ENST00000560005 CABP4P57796 275 aa27.94■■■□□ 2.06
PSEN1-225ENST00000560005 DDR1Q08345 913 aa27.94■■■□□ 2.06
PSEN1-225ENST00000560005 FKBP8Q14318 412 aa27.94■■■□□ 2.06
PSEN1-225ENST00000560005 RRAGCQ9HB90 399 aa27.94■■■□□ 2.06
PSEN1-225ENST00000560005 PTCD1O75127 700 aaKnown RBP27.93■■■□□ 2.06
PSEN1-225ENST00000560005 CHRNA5P30532 468 aa27.92■■■□□ 2.06
PSEN1-225ENST00000560005 PLEKHO1Q53GL0 409 aaPredicted RBP27.92■■■□□ 2.06
PSEN1-225ENST00000560005 ZNF530Q6P9A1 599 aaPredicted RBP27.92■■■□□ 2.06
PSEN1-225ENST00000560005 USP42Q9H9J4 1324 aaKnown RBP27.92■■■□□ 2.06
PSEN1-225ENST00000560005 CAPN15O75808 1086 aa27.91■■■□□ 2.06
PSEN1-225ENST00000560005 CRKLP46109 303 aaKnown RBP27.91■■■□□ 2.06
PSEN1-225ENST00000560005 TNRC6CQ9HCJ0 1690 aaKnown RBP27.9■■■□□ 2.06
PSEN1-225ENST00000560005 SBF1O95248 1867 aa27.87■■■□□ 2.05
PSEN1-225ENST00000560005 MTHFSP49914 203 aa27.87■■■□□ 2.05
PSEN1-225ENST00000560005 SMC1BQ8NDV3 1235 aa27.87■■■□□ 2.05
PSEN1-225ENST00000560005 AMOTQ4VCS5 1084 aa27.86■■■□□ 2.05
PSEN1-225ENST00000560005 TJP1Q07157 1748 aa27.85■■■□□ 2.05
PSEN1-225ENST00000560005 POLRMTO00411 1230 aaKnown RBP27.85■■■□□ 2.05
PSEN1-225ENST00000560005 TNS4Q8IZW8 715 aa27.85■■■□□ 2.05
PSEN1-225ENST00000560005 NFATC2IPQ8NCF5 419 aa27.85■■■□□ 2.05
PSEN1-225ENST00000560005 C1orf141Q5JVX7 400 aa27.84■■■□□ 2.05
PSEN1-225ENST00000560005 RASSF7Q02833 373 aa27.83■■■□□ 2.05
PSEN1-225ENST00000560005 POLR3GLQ9BT43 218 aa27.83■■■□□ 2.05
PSEN1-225ENST00000560005 TM4SF1P30408 202 aa27.82■■■□□ 2.04
PSEN1-225ENST00000560005 INTS5Q6P9B9 1019 aaKnown RBP27.82■■■□□ 2.04
PSEN1-225ENST00000560005 AEBP1Q8IUX7 1158 aa27.82■■■□□ 2.04
PSEN1-225ENST00000560005 ADAMTS7Q9UKP4 1686 aa27.81■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms