RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 RWDD1Q9H446 243 aaPredicted RBP16.1■□□□□ 0.17
USP3-213ENST00000559711 RGS12O14924 1447 aa16.09■□□□□ 0.17
USP3-213ENST00000559711 CYP27B1O15528 508 aa16.09■□□□□ 0.17
USP3-213ENST00000559711 TOM1O60784 492 aa16.09■□□□□ 0.17
USP3-213ENST00000559711 KCNQ3O43525 872 aa16.08■□□□□ 0.17
USP3-213ENST00000559711 HSP90AB1P08238 724 aaKnown RBP16.08■□□□□ 0.17
USP3-213ENST00000559711 EVA1CP58658 441 aa16.08■□□□□ 0.17
USP3-213ENST00000559711 HDAC1Q13547 482 aaPredicted RBP16.08■□□□□ 0.17
USP3-213ENST00000559711 LARP1Q6PKG0 1096 aaKnown RBP16.08■□□□□ 0.17
USP3-213ENST00000559711 DCAF5Q96JK2 942 aa16.08■□□□□ 0.17
USP3-213ENST00000559711 KDM6AO15550 1401 aaPredicted RBP16.08■□□□□ 0.16
USP3-213ENST00000559711 HEG1Q9ULI3 1381 aa16.08■□□□□ 0.16
USP3-213ENST00000559711 SLC52A2Q9HAB3 445 aa16.08■□□□□ 0.16
USP3-213ENST00000559711 G2E3Q7L622 706 aa16.07■□□□□ 0.16
USP3-213ENST00000559711 ZCRB1Q8TBF4 217 aaKnown RBP16.07■□□□□ 0.16
USP3-213ENST00000559711 COL22A1Q8NFW1 1626 aaPredicted RBP16.07■□□□□ 0.16
USP3-213ENST00000559711 IL2RBP14784 551 aa16.06■□□□□ 0.16
USP3-213ENST00000559711 HDGFL1Q5TGJ6 251 aa16.06■□□□□ 0.16
USP3-213ENST00000559711 STRN4Q9NRL3 753 aa16.06■□□□□ 0.16
USP3-213ENST00000559711 RBM19Q9Y4C8 960 aaKnown RBP16.06■□□□□ 0.16
USP3-213ENST00000559711 BTG4Q9NY30 223 aa16.05■□□□□ 0.16
USP3-213ENST00000559711 KDM3BQ7LBC6 1761 aa16.05■□□□□ 0.16
USP3-213ENST00000559711 FLIIQ13045 1269 aa16.05■□□□□ 0.16
USP3-213ENST00000559711 PKD1L3Q7Z443 1732 aa16.05■□□□□ 0.16
USP3-213ENST00000559711 PCDH11XQ9BZA7 1347 aa16.04■□□□□ 0.16
USP3-213ENST00000559711 PCDH11YQ9BZA8 1340 aa16.04■□□□□ 0.16
USP3-213ENST00000559711 GIGYF1O75420 1035 aaPredicted RBP16.04■□□□□ 0.16
USP3-213ENST00000559711 NKX1-1Q15270 411 aaPredicted RBP16.04■□□□□ 0.16
USP3-213ENST00000559711 SKAP1Q86WV1 359 aa16.04■□□□□ 0.16
USP3-213ENST00000559711 NFATC2IPQ8NCF5 419 aa16.04■□□□□ 0.16
USP3-213ENST00000559711 ZNF790Q6PG37 636 aa16.03■□□□□ 0.16
USP3-213ENST00000559711 NECTIN2Q92692 538 aa16.03■□□□□ 0.16
USP3-213ENST00000559711 MRC1P22897 1456 aa16.03■□□□□ 0.16
USP3-213ENST00000559711 COL16A1Q07092 1604 aaPredicted RBP16.02■□□□□ 0.15
USP3-213ENST00000559711 CCT4P50991 539 aaKnown RBP16.02■□□□□ 0.15
USP3-213ENST00000559711 SIPA1L3O60292 1781 aaPredicted RBP16.01■□□□□ 0.15
USP3-213ENST00000559711 COL14A1Q05707 1796 aaKnown RBP16.01■□□□□ 0.15
USP3-213ENST00000559711 EIF2S2P20042 333 aaKnown RBP16.01■□□□□ 0.15
USP3-213ENST00000559711 PIP4K2BP78356 416 aa16.01■□□□□ 0.15
USP3-213ENST00000559711 SMC5Q8IY18 1101 aa16.01■□□□□ 0.15
USP3-213ENST00000559711 ERVV-2B6SEH9 535 aa16■□□□□ 0.15
USP3-213ENST00000559711 FKBP5Q13451 457 aaPredicted RBP16■□□□□ 0.15
USP3-213ENST00000559711 PARP4Q9UKK3 1724 aaKnown RBP16■□□□□ 0.15
USP3-213ENST00000559711 SCN11AQ9UI33 1791 aa15.99■□□□□ 0.15
USP3-213ENST00000559711 UBAP1LF5GYI3 381 aa15.99■□□□□ 0.15
USP3-213ENST00000559711 F6X3S4 739 aa15.99■□□□□ 0.15
USP3-213ENST00000559711 CABP4P57796 275 aa15.99■□□□□ 0.15
USP3-213ENST00000559711 SLC39A6Q13433 755 aa15.99■□□□□ 0.15
USP3-213ENST00000559711 CHPF2Q9P2E5 772 aa15.99■□□□□ 0.15
USP3-213ENST00000559711 DBF4Q9UBU7 674 aaPredicted RBP15.99■□□□□ 0.15
USP3-213ENST00000559711 PDZRN3Q9UPQ7 1066 aa15.99■□□□□ 0.15
USP3-213ENST00000559711 PHAXQ9H814 394 aaKnown RBP15.99■□□□□ 0.15
USP3-213ENST00000559711 PHLPP1O60346 1717 aa15.98■□□□□ 0.15
USP3-213ENST00000559711 SIRT2Q8IXJ6 389 aa15.98■□□□□ 0.15
USP3-213ENST00000559711 DISP2A7MBM2 1401 aa15.97■□□□□ 0.15
USP3-213ENST00000559711 PDE4AP27815 886 aa15.97■□□□□ 0.15
USP3-213ENST00000559711 RGS3P49796 1198 aa15.97■□□□□ 0.15
USP3-213ENST00000559711 SLC4A10Q6U841 1118 aa15.97■□□□□ 0.15
USP3-213ENST00000559711 BACH2Q9BYV9 841 aa15.97■□□□□ 0.15
USP3-213ENST00000559711 C1orf115Q9H7X2 142 aa15.97■□□□□ 0.15
USP3-213ENST00000559711 PRAMEF22A3QJZ6 481 aa15.96■□□□□ 0.15
USP3-213ENST00000559711 DDX54Q8TDD1 881 aaKnown RBP15.96■□□□□ 0.15
USP3-213ENST00000559711 ZNF496Q96IT1 587 aaPredicted RBP15.96■□□□□ 0.15
USP3-213ENST00000559711 MEIS3Q99687 375 aa15.96■□□□□ 0.15
USP3-213ENST00000559711 USP35Q9P2H5 1018 aa15.96■□□□□ 0.15
USP3-213ENST00000559711 PXDNLA1KZ92 1463 aa15.96■□□□□ 0.14
USP3-213ENST00000559711 RPAP2Q8IXW5 612 aaPredicted RBP15.95■□□□□ 0.14
USP3-213ENST00000559711 TTC5Q8N0Z6 440 aa15.95■□□□□ 0.14
USP3-213ENST00000559711 VIRMAQ69YN4 1812 aaKnown RBP15.95■□□□□ 0.14
USP3-213ENST00000559711 ADAMTS2O95450 1211 aa15.95■□□□□ 0.14
USP3-213ENST00000559711 SNRPA1P09661 255 aaKnown RBP15.95■□□□□ 0.14
USP3-213ENST00000559711 ANKRD44Q8N8A2 993 aa15.95■□□□□ 0.14
USP3-213ENST00000559711 GCC1Q96CN9 775 aa15.95■□□□□ 0.14
USP3-213ENST00000559711 FMNL2Q96PY5 1086 aa15.95■□□□□ 0.14
USP3-213ENST00000559711 DDX21Q9NR30 783 aaKnown RBP eCLIP15.95■□□□□ 0.14
USP3-213ENST00000559711 HYPKQ9NX55 129 aa15.95■□□□□ 0.14
USP3-213ENST00000559711 CACNA1FO60840 1977 aa15.94■□□□□ 0.14
USP3-213ENST00000559711 PDIA6Q15084 440 aa15.94■□□□□ 0.14
USP3-213ENST00000559711 NUCB1Q02818 461 aa15.93■□□□□ 0.14
USP3-213ENST00000559711 ATP10DQ9P241 1426 aa15.93■□□□□ 0.14
USP3-213ENST00000559711 ANXA1P04083 346 aa15.92■□□□□ 0.14
USP3-213ENST00000559711 GNAI3P08754 354 aa15.92■□□□□ 0.14
USP3-213ENST00000559711 PROSER3Q2NL68 480 aa15.92■□□□□ 0.14
USP3-213ENST00000559711 CEP85Q6P2H3 762 aa15.92■□□□□ 0.14
USP3-213ENST00000559711 CDCA7Q9BWT1 371 aaPredicted RBP15.92■□□□□ 0.14
USP3-213ENST00000559711 THRAP3Q9Y2W1 955 aaKnown RBP15.92■□□□□ 0.14
USP3-213ENST00000559711 PI4KAP2A4QPH2 592 aa15.92■□□□□ 0.14
USP3-213ENST00000559711 PI4KAP1Q8N8J0 262 aa15.92■□□□□ 0.14
USP3-213ENST00000559711 DNAAF4Q8WXU2 420 aa15.92■□□□□ 0.14
USP3-213ENST00000559711 SPATA31A1Q5TZJ5 1347 aa15.91■□□□□ 0.14
USP3-213ENST00000559711 NUTM2BA6NNL0 878 aaPredicted RBP15.91■□□□□ 0.14
USP3-213ENST00000559711 NUTM2EB1AL46 878 aaPredicted RBP15.91■□□□□ 0.14
USP3-213ENST00000559711 FAM161AQ3B820 660 aa15.91■□□□□ 0.14
USP3-213ENST00000559711 BEND3Q5T5X7 828 aa15.91■□□□□ 0.14
USP3-213ENST00000559711 NUTM2AQ8IVF1 878 aaPredicted RBP15.91■□□□□ 0.14
USP3-213ENST00000559711 DCTPP1Q9H773 170 aa15.91■□□□□ 0.14
USP3-213ENST00000559711 ADCY9O60503 1353 aa15.9■□□□□ 0.14
USP3-213ENST00000559711 EXOC5O00471 708 aa15.9■□□□□ 0.14
USP3-213ENST00000559711 GNAI2P04899 355 aa15.9■□□□□ 0.14
USP3-213ENST00000559711 KSR2Q6VAB6 950 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms