RNA–Protein interactions for RNA: ENST00000559460.5

SMAD3-211, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-211ENST00000559460 TRAPPC3LQ5T215 181 aa13.79□□□□□ -0.2
SMAD3-211ENST00000559460 USHBP1Q8N6Y0 703 aa13.79□□□□□ -0.2
SMAD3-211ENST00000559460 LINC00116Q8NCU8 138 aa13.79□□□□□ -0.2
SMAD3-211ENST00000559460 COG3Q96JB2 828 aa13.79□□□□□ -0.2
SMAD3-211ENST00000559460 RTCBQ9Y3I0 505 aaKnown RBP13.79□□□□□ -0.2
SMAD3-211ENST00000559460 KIAA1551Q9HCM1 1747 aa13.78□□□□□ -0.2
SMAD3-211ENST00000559460 ATP6V1AP38606 617 aa13.78□□□□□ -0.2
SMAD3-211ENST00000559460 MLLT1Q03111 559 aaPredicted RBP13.78□□□□□ -0.2
SMAD3-211ENST00000559460 DCAF5Q96JK2 942 aa13.78□□□□□ -0.2
SMAD3-211ENST00000559460 MAP3K19Q56UN5 1328 aa13.78□□□□□ -0.2
SMAD3-211ENST00000559460 CREBZFQ9NS37 354 aa13.77□□□□□ -0.21
SMAD3-211ENST00000559460 ARFGEF1Q9Y6D6 1849 aa13.76□□□□□ -0.21
SMAD3-211ENST00000559460 RTL1A6NKG5 1358 aa13.76□□□□□ -0.21
SMAD3-211ENST00000559460 ROCK2O75116 1388 aaKnown RBP13.76□□□□□ -0.21
SMAD3-211ENST00000559460 GLTPD2A6NH11 291 aa13.76□□□□□ -0.21
SMAD3-211ENST00000559460 CD163L1Q9NR16 1453 aa13.75□□□□□ -0.21
SMAD3-211ENST00000559460 RFC4P35249 363 aa13.75□□□□□ -0.21
SMAD3-211ENST00000559460 NBPF6Q5VWK0 638 aa13.75□□□□□ -0.21
SMAD3-211ENST00000559460 PIGBQ92521 554 aa13.75□□□□□ -0.21
SMAD3-211ENST00000559460 ABHD8Q96I13 439 aa13.75□□□□□ -0.21
SMAD3-211ENST00000559460 NBPF4Q96M43 638 aa13.75□□□□□ -0.21
SMAD3-211ENST00000559460 TMOD3Q9NYL9 352 aa13.75□□□□□ -0.21
SMAD3-211ENST00000559460 C4AP0C0L4 1744 aa13.75□□□□□ -0.21
SMAD3-211ENST00000559460 ADRA2BP18089 450 aa13.74□□□□□ -0.21
SMAD3-211ENST00000559460 DPY19L2Q6NUT2 758 aa13.74□□□□□ -0.21
SMAD3-211ENST00000559460 RGPD2P0DJD1 1756 aa13.73□□□□□ -0.21
SMAD3-211ENST00000559460 LMNB1P20700 586 aa13.73□□□□□ -0.21
SMAD3-211ENST00000559460 KCNA3P22001 575 aa13.73□□□□□ -0.21
SMAD3-211ENST00000559460 BRCA1P38398 1863 aaKnown RBP13.73□□□□□ -0.21
SMAD3-211ENST00000559460 A0A1W2PP64 1363 aa13.72□□□□□ -0.21
SMAD3-211ENST00000559460 PCNTO95613 3336 aa13.72□□□□□ -0.21
SMAD3-211ENST00000559460 CYP27B1O15528 508 aa13.72□□□□□ -0.21
SMAD3-211ENST00000559460 LBX1P52954 281 aa13.72□□□□□ -0.21
SMAD3-211ENST00000559460 RASSF7Q02833 373 aa13.72□□□□□ -0.21
SMAD3-211ENST00000559460 ITPK1Q13572 414 aa13.72□□□□□ -0.21
SMAD3-211ENST00000559460 SLC12A5Q9H2X9 1139 aa13.72□□□□□ -0.21
SMAD3-211ENST00000559460 CCDC85CA6NKD9 419 aa13.71□□□□□ -0.21
SMAD3-211ENST00000559460 GYS1P13807 737 aa13.71□□□□□ -0.21
SMAD3-211ENST00000559460 ARHGEF1Q92888 912 aaKnown RBP13.71□□□□□ -0.21
SMAD3-211ENST00000559460 ITGB4P16144 1822 aa13.71□□□□□ -0.22
SMAD3-211ENST00000559460 CNTNAP1P78357 1384 aa13.71□□□□□ -0.22
SMAD3-211ENST00000559460 CHADLQ6NUI6 762 aa13.7□□□□□ -0.22
SMAD3-211ENST00000559460 SPG7Q9UQ90 795 aa13.7□□□□□ -0.22
SMAD3-211ENST00000559460 CHRNA5P30532 468 aa13.69□□□□□ -0.22
SMAD3-211ENST00000559460 CFAP44Q96MT7 982 aa13.69□□□□□ -0.22
SMAD3-211ENST00000559460 ASAP1Q9ULH1 1129 aa13.69□□□□□ -0.22
SMAD3-211ENST00000559460 FBLN1P23142 703 aa13.68□□□□□ -0.22
SMAD3-211ENST00000559460 RRS1Q15050 365 aaKnown RBP13.68□□□□□ -0.22
SMAD3-211ENST00000559460 RBM42Q9BTD8 480 aaKnown RBP13.68□□□□□ -0.22
SMAD3-211ENST00000559460 MAP2P11137 1827 aaKnown RBP13.67□□□□□ -0.22
SMAD3-211ENST00000559460 KDM6AO15550 1401 aaPredicted RBP13.66□□□□□ -0.22
SMAD3-211ENST00000559460 SBF1O95248 1867 aa13.66□□□□□ -0.22
SMAD3-211ENST00000559460 RPS6KA4O75676 772 aa13.66□□□□□ -0.22
SMAD3-211ENST00000559460 RC3H1Q5TC82 1133 aaKnown RBP13.66□□□□□ -0.22
SMAD3-211ENST00000559460 CNTNAP4Q9C0A0 1308 aa13.65□□□□□ -0.22
SMAD3-211ENST00000559460 TIAM2Q8IVF5 1701 aa13.65□□□□□ -0.22
SMAD3-211ENST00000559460 MAP2K1Q02750 393 aaPredicted RBP13.65□□□□□ -0.22
SMAD3-211ENST00000559460 NKX1-1Q15270 411 aaPredicted RBP13.65□□□□□ -0.22
SMAD3-211ENST00000559460 WBP1LQ9NX94 342 aa13.65□□□□□ -0.22
SMAD3-211ENST00000559460 INSRP06213 1382 aa13.64□□□□□ -0.23
SMAD3-211ENST00000559460 VEGFBP49765 207 aa13.64□□□□□ -0.23
SMAD3-211ENST00000559460 BEGAINQ9BUH8 593 aa13.64□□□□□ -0.23
SMAD3-211ENST00000559460 ATG3Q9NT62 314 aa13.64□□□□□ -0.23
SMAD3-211ENST00000559460 FLT4P35916 1363 aa13.63□□□□□ -0.23
SMAD3-211ENST00000559460 TMEM88BA6NKF7 163 aa13.63□□□□□ -0.23
SMAD3-211ENST00000559460 HSPA8P11142 646 aaKnown RBP13.63□□□□□ -0.23
SMAD3-211ENST00000559460 RGS19P49795 217 aa13.63□□□□□ -0.23
SMAD3-211ENST00000559460 TTLL6Q8N841 843 aa13.63□□□□□ -0.23
SMAD3-211ENST00000559460 L3MBTL2Q969R5 705 aa13.63□□□□□ -0.23
SMAD3-211ENST00000559460 ERFEQ4G0M1 354 aa13.62□□□□□ -0.23
SMAD3-211ENST00000559460 HSP90AB2PQ58FF8 381 aa13.62□□□□□ -0.23
SMAD3-211ENST00000559460 IFNL2Q8IZJ0 200 aa13.62□□□□□ -0.23
SMAD3-211ENST00000559460 KDRP35968 1356 aa13.61□□□□□ -0.23
SMAD3-211ENST00000559460 IQCA1LA6NCM1 817 aa13.61□□□□□ -0.23
SMAD3-211ENST00000559460 POTECB2RU33 542 aa13.61□□□□□ -0.23
SMAD3-211ENST00000559460 DDR1Q08345 913 aa13.61□□□□□ -0.23
SMAD3-211ENST00000559460 FKBP8Q14318 412 aa13.61□□□□□ -0.23
SMAD3-211ENST00000559460 SRP68Q9UHB9 627 aaKnown RBP13.61□□□□□ -0.23
SMAD3-211ENST00000559460 USP42Q9H9J4 1324 aaKnown RBP13.61□□□□□ -0.23
SMAD3-211ENST00000559460 ZPR1O75312 459 aa13.6□□□□□ -0.23
SMAD3-211ENST00000559460 LDHDQ86WU2 507 aa13.6□□□□□ -0.23
SMAD3-211ENST00000559460 PUS7Q96PZ0 661 aaKnown RBP13.6□□□□□ -0.23
SMAD3-211ENST00000559460 KIF24Q5T7B8 1368 aa13.59□□□□□ -0.23
SMAD3-211ENST00000559460 POLRMTO00411 1230 aaKnown RBP13.59□□□□□ -0.23
SMAD3-211ENST00000559460 PHKG2P15735 406 aa13.59□□□□□ -0.23
SMAD3-211ENST00000559460 DEFB115Q30KQ5 88 aa13.59□□□□□ -0.23
SMAD3-211ENST00000559460 CARD11Q9BXL7 1154 aa13.59□□□□□ -0.23
SMAD3-211ENST00000559460 GGNBP2Q9H3C7 697 aa13.59□□□□□ -0.23
SMAD3-211ENST00000559460 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.59□□□□□ -0.23
SMAD3-211ENST00000559460 POTEIP0CG38 1075 aa13.58□□□□□ -0.24
SMAD3-211ENST00000559460 POTEJP0CG39 1038 aa13.58□□□□□ -0.24
SMAD3-211ENST00000559460 PASKQ96RG2 1323 aa13.58□□□□□ -0.24
SMAD3-211ENST00000559460 ZNF831Q5JPB2 1677 aa13.57□□□□□ -0.24
SMAD3-211ENST00000559460 H0YIN7 160 aa13.57□□□□□ -0.24
SMAD3-211ENST00000559460 NFKBIEO00221 500 aa13.57□□□□□ -0.24
SMAD3-211ENST00000559460 CRKLP46109 303 aaKnown RBP13.57□□□□□ -0.24
SMAD3-211ENST00000559460 PAXIP1Q6ZW49 1069 aaPredicted RBP13.57□□□□□ -0.24
SMAD3-211ENST00000559460 ABT1Q9ULW3 272 aaKnown RBP13.57□□□□□ -0.24
SMAD3-211ENST00000559460 CLEC11AQ9Y240 323 aa13.57□□□□□ -0.24
SMAD3-211ENST00000559460 PPM1GO15355 546 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms