RNA–Protein interactions for RNA: ENST00000559433.5

LRRC28-214, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-214ENST00000559433 POLD1P28340 1107 aa16.93■□□□□ 0.3
LRRC28-214ENST00000559433 PPP2R1AP30153 589 aa16.93■□□□□ 0.3
LRRC28-214ENST00000559433 PTGER2P43116 358 aa16.93■□□□□ 0.3
LRRC28-214ENST00000559433 SIK1P57059 783 aa16.93■□□□□ 0.3
LRRC28-214ENST00000559433 CABP4P57796 275 aa16.93■□□□□ 0.3
LRRC28-214ENST00000559433 ZNF831Q5JPB2 1677 aa16.92■□□□□ 0.3
LRRC28-214ENST00000559433 NPM3O75607 178 aaKnown RBP16.92■□□□□ 0.3
LRRC28-214ENST00000559433 AKAP4Q5JQC9 854 aa16.92■□□□□ 0.3
LRRC28-214ENST00000559433 ATG3Q9NT62 314 aa16.92■□□□□ 0.3
LRRC28-214ENST00000559433 FLAD1Q8NFF5 587 aa16.9■□□□□ 0.3
LRRC28-214ENST00000559433 AK7Q96M32 723 aa16.9■□□□□ 0.3
LRRC28-214ENST00000559433 ARXQ96QS3 562 aa16.9■□□□□ 0.3
LRRC28-214ENST00000559433 ADAMTS7Q9UKP4 1686 aa16.9■□□□□ 0.3
LRRC28-214ENST00000559433 COL5A3P25940 1745 aaPredicted RBP16.9■□□□□ 0.3
LRRC28-214ENST00000559433 ATP6V1AP38606 617 aa16.89■□□□□ 0.29
LRRC28-214ENST00000559433 MTHFSDQ2M296 383 aaKnown RBP16.89■□□□□ 0.29
LRRC28-214ENST00000559433 LINC00116Q8NCU8 138 aa16.89■□□□□ 0.29
LRRC28-214ENST00000559433 SGIP1Q9BQI5 828 aa16.89■□□□□ 0.29
LRRC28-214ENST00000559433 MRC1P22897 1456 aa16.88■□□□□ 0.29
LRRC28-214ENST00000559433 ITPK1Q13572 414 aa16.88■□□□□ 0.29
LRRC28-214ENST00000559433 COL23A1Q86Y22 540 aaPredicted RBP16.88■□□□□ 0.29
LRRC28-214ENST00000559433 NFATC2IPQ8NCF5 419 aa16.88■□□□□ 0.29
LRRC28-214ENST00000559433 RBM42Q9BTD8 480 aaKnown RBP16.88■□□□□ 0.29
LRRC28-214ENST00000559433 NUDCQ9Y266 331 aa16.88■□□□□ 0.29
LRRC28-214ENST00000559433 KLHL34Q8N239 644 aa16.87■□□□□ 0.29
LRRC28-214ENST00000559433 PHF14O94880 888 aa16.86■□□□□ 0.29
LRRC28-214ENST00000559433 FHDC1Q9C0D6 1143 aaPredicted RBP16.86■□□□□ 0.29
LRRC28-214ENST00000559433 LGR6Q9HBX8 967 aa16.86■□□□□ 0.29
LRRC28-214ENST00000559433 TJP1Q07157 1748 aa16.86■□□□□ 0.29
LRRC28-214ENST00000559433 CICQ96RK0 1608 aaPredicted RBP16.85■□□□□ 0.29
LRRC28-214ENST00000559433 RNMTO43148 476 aaKnown RBP16.85■□□□□ 0.29
LRRC28-214ENST00000559433 U2AF1L5P0DN76 240 aaPredicted RBP16.85■□□□□ 0.29
LRRC28-214ENST00000559433 PRKAR2BP31323 418 aa16.85■□□□□ 0.29
LRRC28-214ENST00000559433 U2AF1Q01081 240 aaKnown RBP eCLIP16.85■□□□□ 0.29
LRRC28-214ENST00000559433 GAS2L2Q8NHY3 880 aa16.85■□□□□ 0.29
LRRC28-214ENST00000559433 SLC52A2Q9HAB3 445 aa16.85■□□□□ 0.29
LRRC28-214ENST00000559433 MAP3K5Q99683 1374 aa16.85■□□□□ 0.29
LRRC28-214ENST00000559433 GNPATO15228 680 aa16.84■□□□□ 0.29
LRRC28-214ENST00000559433 PTCD1O75127 700 aaKnown RBP16.84■□□□□ 0.29
LRRC28-214ENST00000559433 DDX10Q13206 875 aaKnown RBP16.84■□□□□ 0.29
LRRC28-214ENST00000559433 AMIGO3Q86WK7 504 aa16.84■□□□□ 0.29
LRRC28-214ENST00000559433 SLC4A9Q96Q91 983 aa16.84■□□□□ 0.29
LRRC28-214ENST00000559433 SYT17Q9BSW7 474 aa16.84■□□□□ 0.29
LRRC28-214ENST00000559433 RSPH6AQ9H0K4 717 aa16.84■□□□□ 0.29
LRRC28-214ENST00000559433 SIPA1L3O60292 1781 aaPredicted RBP16.84■□□□□ 0.29
LRRC28-214ENST00000559433 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.83■□□□□ 0.28
LRRC28-214ENST00000559433 MSL1Q68DK7 614 aa16.83■□□□□ 0.28
LRRC28-214ENST00000559433 UBR2Q8IWV8 1755 aa16.82■□□□□ 0.28
LRRC28-214ENST00000559433 SSFA2P28290 1259 aa16.82■□□□□ 0.28
LRRC28-214ENST00000559433 SMIM5Q71RC9 77 aa16.82■□□□□ 0.28
LRRC28-214ENST00000559433 MYH14Q7Z406 1995 aaKnown RBP16.82■□□□□ 0.28
LRRC28-214ENST00000559433 GNAT3A8MTJ3 354 aa16.81■□□□□ 0.28
LRRC28-214ENST00000559433 ZEB1P37275 1124 aaPredicted RBP16.81■□□□□ 0.28
LRRC28-214ENST00000559433 CNKSR2Q8WXI2 1034 aa16.81■□□□□ 0.28
LRRC28-214ENST00000559433 PHACTR3Q96KR7 559 aa16.81■□□□□ 0.28
LRRC28-214ENST00000559433 CNTNAP4Q9C0A0 1308 aa16.8■□□□□ 0.28
LRRC28-214ENST00000559433 C4AP0C0L4 1744 aa16.8■□□□□ 0.28
LRRC28-214ENST00000559433 FCHSD2O94868 740 aa16.8■□□□□ 0.28
LRRC28-214ENST00000559433 KCPQ6ZWJ8 1503 aa16.8■□□□□ 0.28
LRRC28-214ENST00000559433 SLC39A6Q13433 755 aa16.79■□□□□ 0.28
LRRC28-214ENST00000559433 RALBP1Q15311 655 aa16.79■□□□□ 0.28
LRRC28-214ENST00000559433 DLG5Q8TDM6 1919 aa16.78■□□□□ 0.28
LRRC28-214ENST00000559433 TEFQ10587 303 aa16.78■□□□□ 0.28
LRRC28-214ENST00000559433 GPR162Q16538 588 aa16.78■□□□□ 0.28
LRRC28-214ENST00000559433 TRAPPC3LQ5T215 181 aa16.78■□□□□ 0.28
LRRC28-214ENST00000559433 RC3H1Q5TC82 1133 aaKnown RBP16.78■□□□□ 0.28
LRRC28-214ENST00000559433 RTCBQ9Y3I0 505 aaKnown RBP16.78■□□□□ 0.28
LRRC28-214ENST00000559433 YY1P25490 414 aa16.77■□□□□ 0.28
LRRC28-214ENST00000559433 PELP1Q8IZL8 1130 aaKnown RBP16.77■□□□□ 0.28
LRRC28-214ENST00000559433 IL17REQ8NFR9 667 aa16.77■□□□□ 0.28
LRRC28-214ENST00000559433 CRKLP46109 303 aaKnown RBP16.76■□□□□ 0.27
LRRC28-214ENST00000559433 TTC5Q8N0Z6 440 aa16.76■□□□□ 0.27
LRRC28-214ENST00000559433 CEMIPQ8WUJ3 1361 aa16.76■□□□□ 0.27
LRRC28-214ENST00000559433 RPS6KA4O75676 772 aa16.75■□□□□ 0.27
LRRC28-214ENST00000559433 MYBBP1AQ9BQG0 1328 aaKnown RBP16.74■□□□□ 0.27
LRRC28-214ENST00000559433 NEFMP07197 916 aa16.74■□□□□ 0.27
LRRC28-214ENST00000559433 DNAJC10Q8IXB1 793 aa16.74■□□□□ 0.27
LRRC28-214ENST00000559433 RTF1Q92541 710 aaKnown RBP16.74■□□□□ 0.27
LRRC28-214ENST00000559433 RFC4P35249 363 aa16.73■□□□□ 0.27
LRRC28-214ENST00000559433 ARHGEF1Q92888 912 aaKnown RBP16.73■□□□□ 0.27
LRRC28-214ENST00000559433 VSIG10Q8N0Z9 540 aa16.72■□□□□ 0.27
LRRC28-214ENST00000559433 CCDC87Q9NVE4 849 aa16.72■□□□□ 0.27
LRRC28-214ENST00000559433 INTS5Q6P9B9 1019 aaKnown RBP16.71■□□□□ 0.27
LRRC28-214ENST00000559433 ZNF790Q6PG37 636 aa16.71■□□□□ 0.27
LRRC28-214ENST00000559433 MCM10Q7L590 875 aa16.71■□□□□ 0.27
LRRC28-214ENST00000559433 NLGN1Q8N2Q7 840 aa16.71■□□□□ 0.27
LRRC28-214ENST00000559433 NLGN2Q8NFZ4 835 aa16.71■□□□□ 0.27
LRRC28-214ENST00000559433 CD2APQ9Y5K6 639 aa16.71■□□□□ 0.27
LRRC28-214ENST00000559433 MAPK8IP3Q9UPT6 1336 aa16.7■□□□□ 0.26
LRRC28-214ENST00000559433 BTBD11A6QL63 1104 aa16.7■□□□□ 0.26
LRRC28-214ENST00000559433 CYP19A1P11511 503 aaPredicted RBP16.7■□□□□ 0.26
LRRC28-214ENST00000559433 PNNQ9H307 717 aaKnown RBP16.7■□□□□ 0.26
LRRC28-214ENST00000559433 HEG1Q9ULI3 1381 aa16.69■□□□□ 0.26
LRRC28-214ENST00000559433 HTATSF1O43719 755 aaKnown RBP16.69■□□□□ 0.26
LRRC28-214ENST00000559433 DCTN1Q14203 1278 aa16.69■□□□□ 0.26
LRRC28-214ENST00000559433 ZNF496Q96IT1 587 aaPredicted RBP16.69■□□□□ 0.26
LRRC28-214ENST00000559433 PLEKHF1Q96S99 279 aa16.69■□□□□ 0.26
LRRC28-214ENST00000559433 CHD4Q14839 1912 aa16.68■□□□□ 0.26
LRRC28-214ENST00000559433 KIF13BQ9NQT8 1826 aa16.68■□□□□ 0.26
LRRC28-214ENST00000559433 MMP10P09238 476 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms