RNA–Protein interactions for RNA: ENST00000558955.2

PKNOX1-208, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 629 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-208ENST00000558955 NFATC2IPQ8NCF5 419 aa16.77■□□□□ 0.28
PKNOX1-208ENST00000558955 C4BP0C0L5 1744 aa16.76■□□□□ 0.27
PKNOX1-208ENST00000558955 ATP6V1AP38606 617 aa16.76■□□□□ 0.27
PKNOX1-208ENST00000558955 COL23A1Q86Y22 540 aaPredicted RBP16.76■□□□□ 0.27
PKNOX1-208ENST00000558955 LINC00116Q8NCU8 138 aa16.76■□□□□ 0.27
PKNOX1-208ENST00000558955 SGIP1Q9BQI5 828 aa16.76■□□□□ 0.27
PKNOX1-208ENST00000558955 SCN11AQ9UI33 1791 aa16.76■□□□□ 0.27
PKNOX1-208ENST00000558955 RNMTO43148 476 aaKnown RBP16.75■□□□□ 0.27
PKNOX1-208ENST00000558955 MAPK8IP2Q13387 824 aaPredicted RBP16.75■□□□□ 0.27
PKNOX1-208ENST00000558955 SMIM5Q71RC9 77 aa16.75■□□□□ 0.27
PKNOX1-208ENST00000558955 AMIGO3Q86WK7 504 aa16.75■□□□□ 0.27
PKNOX1-208ENST00000558955 SLC4A9Q96Q91 983 aa16.75■□□□□ 0.27
PKNOX1-208ENST00000558955 RBM42Q9BTD8 480 aaKnown RBP16.75■□□□□ 0.27
PKNOX1-208ENST00000558955 NUDCQ9Y266 331 aa16.75■□□□□ 0.27
PKNOX1-208ENST00000558955 U2AF1L5P0DN76 240 aaPredicted RBP16.74■□□□□ 0.27
PKNOX1-208ENST00000558955 PRKAR2BP31323 418 aa16.74■□□□□ 0.27
PKNOX1-208ENST00000558955 U2AF1Q01081 240 aaKnown RBP eCLIP16.74■□□□□ 0.27
PKNOX1-208ENST00000558955 SLC16A10Q8TF71 515 aa16.74■□□□□ 0.27
PKNOX1-208ENST00000558955 AK7Q96M32 723 aa16.74■□□□□ 0.27
PKNOX1-208ENST00000558955 RSPH6AQ9H0K4 717 aa16.74■□□□□ 0.27
PKNOX1-208ENST00000558955 HMGB2P26583 209 aaKnown RBP16.73■□□□□ 0.27
PKNOX1-208ENST00000558955 PHACTR3Q96KR7 559 aa16.73■□□□□ 0.27
PKNOX1-208ENST00000558955 SLC52A2Q9HAB3 445 aa16.73■□□□□ 0.27
PKNOX1-208ENST00000558955 PTCD1O75127 700 aaKnown RBP16.72■□□□□ 0.27
PKNOX1-208ENST00000558955 ZEB1P37275 1124 aaPredicted RBP16.72■□□□□ 0.27
PKNOX1-208ENST00000558955 PPP4R3CPQ6ZMV5 832 aa16.72■□□□□ 0.27
PKNOX1-208ENST00000558955 VIRMAQ69YN4 1812 aaKnown RBP16.71■□□□□ 0.27
PKNOX1-208ENST00000558955 PHF14O94880 888 aa16.71■□□□□ 0.27
PKNOX1-208ENST00000558955 GAS2L2Q8NHY3 880 aa16.71■□□□□ 0.27
PKNOX1-208ENST00000558955 MRC1P22897 1456 aa16.71■□□□□ 0.27
PKNOX1-208ENST00000558955 ADAMTS7Q9UKP4 1686 aa16.71■□□□□ 0.27
PKNOX1-208ENST00000558955 UBR3Q6ZT12 1888 aa16.7■□□□□ 0.26
PKNOX1-208ENST00000558955 MAP3K5Q99683 1374 aa16.7■□□□□ 0.26
PKNOX1-208ENST00000558955 MSL1Q68DK7 614 aa16.7■□□□□ 0.26
PKNOX1-208ENST00000558955 ARXQ96QS3 562 aa16.7■□□□□ 0.26
PKNOX1-208ENST00000558955 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.69■□□□□ 0.26
PKNOX1-208ENST00000558955 GNAT3A8MTJ3 354 aa16.69■□□□□ 0.26
PKNOX1-208ENST00000558955 GNPATO15228 680 aa16.69■□□□□ 0.26
PKNOX1-208ENST00000558955 SLC39A6Q13433 755 aa16.69■□□□□ 0.26
PKNOX1-208ENST00000558955 FLAD1Q8NFF5 587 aa16.69■□□□□ 0.26
PKNOX1-208ENST00000558955 IL17REQ8NFR9 667 aa16.69■□□□□ 0.26
PKNOX1-208ENST00000558955 FHDC1Q9C0D6 1143 aaPredicted RBP16.69■□□□□ 0.26
PKNOX1-208ENST00000558955 ZNF831Q5JPB2 1677 aa16.69■□□□□ 0.26
PKNOX1-208ENST00000558955 COL24A1Q17RW2 1714 aa16.68■□□□□ 0.26
PKNOX1-208ENST00000558955 FCHSD2O94868 740 aa16.68■□□□□ 0.26
PKNOX1-208ENST00000558955 RALBP1Q15311 655 aa16.68■□□□□ 0.26
PKNOX1-208ENST00000558955 SSFA2P28290 1259 aa16.67■□□□□ 0.26
PKNOX1-208ENST00000558955 POLD1P28340 1107 aa16.67■□□□□ 0.26
PKNOX1-208ENST00000558955 SYT17Q9BSW7 474 aa16.67■□□□□ 0.26
PKNOX1-208ENST00000558955 COL5A3P25940 1745 aaPredicted RBP16.67■□□□□ 0.26
PKNOX1-208ENST00000558955 RC3H1Q5TC82 1133 aaKnown RBP16.65■□□□□ 0.26
PKNOX1-208ENST00000558955 CNTNAP4Q9C0A0 1308 aa16.65■□□□□ 0.26
PKNOX1-208ENST00000558955 TJP1Q07157 1748 aa16.65■□□□□ 0.26
PKNOX1-208ENST00000558955 TEFQ10587 303 aa16.64■□□□□ 0.25
PKNOX1-208ENST00000558955 RTCBQ9Y3I0 505 aaKnown RBP16.64■□□□□ 0.25
PKNOX1-208ENST00000558955 KCPQ6ZWJ8 1503 aa16.64■□□□□ 0.25
PKNOX1-208ENST00000558955 MYH14Q7Z406 1995 aaKnown RBP16.64■□□□□ 0.25
PKNOX1-208ENST00000558955 CRKLP46109 303 aaKnown RBP16.63■□□□□ 0.25
PKNOX1-208ENST00000558955 DNAJC10Q8IXB1 793 aa16.63■□□□□ 0.25
PKNOX1-208ENST00000558955 KLHL34Q8N239 644 aa16.63■□□□□ 0.25
PKNOX1-208ENST00000558955 CEMIPQ8WUJ3 1361 aa16.63■□□□□ 0.25
PKNOX1-208ENST00000558955 RPS6KA4O75676 772 aa16.62■□□□□ 0.25
PKNOX1-208ENST00000558955 TRAPPC3LQ5T215 181 aa16.62■□□□□ 0.25
PKNOX1-208ENST00000558955 MCM10Q7L590 875 aa16.62■□□□□ 0.25
PKNOX1-208ENST00000558955 PLEKHF1Q96S99 279 aa16.62■□□□□ 0.25
PKNOX1-208ENST00000558955 MYBBP1AQ9BQG0 1328 aaKnown RBP16.62■□□□□ 0.25
PKNOX1-208ENST00000558955 CICQ96RK0 1608 aaPredicted RBP16.62■□□□□ 0.25
PKNOX1-208ENST00000558955 SIPA1L3O60292 1781 aaPredicted RBP16.61■□□□□ 0.25
PKNOX1-208ENST00000558955 DCTN1Q14203 1278 aa16.61■□□□□ 0.25
PKNOX1-208ENST00000558955 INTS5Q6P9B9 1019 aaKnown RBP16.61■□□□□ 0.25
PKNOX1-208ENST00000558955 ARHGEF1Q92888 912 aaKnown RBP16.61■□□□□ 0.25
PKNOX1-208ENST00000558955 UBR2Q8IWV8 1755 aa16.6■□□□□ 0.25
PKNOX1-208ENST00000558955 TTC5Q8N0Z6 440 aa16.6■□□□□ 0.25
PKNOX1-208ENST00000558955 RTF1Q92541 710 aaKnown RBP16.6■□□□□ 0.25
PKNOX1-208ENST00000558955 KCNQ3O43525 872 aa16.59■□□□□ 0.25
PKNOX1-208ENST00000558955 CYP19A1P11511 503 aaPredicted RBP16.59■□□□□ 0.25
PKNOX1-208ENST00000558955 ZNF790Q6PG37 636 aa16.59■□□□□ 0.25
PKNOX1-208ENST00000558955 ZNF496Q96IT1 587 aaPredicted RBP16.59■□□□□ 0.25
PKNOX1-208ENST00000558955 PRKRIP1Q9H875 184 aaPredicted RBP16.59■□□□□ 0.25
PKNOX1-208ENST00000558955 NEFMP07197 916 aa16.58■□□□□ 0.24
PKNOX1-208ENST00000558955 NLGN2Q8NFZ4 835 aa16.58■□□□□ 0.24
PKNOX1-208ENST00000558955 CCDC87Q9NVE4 849 aa16.58■□□□□ 0.24
PKNOX1-208ENST00000558955 BTBD11A6QL63 1104 aa16.57■□□□□ 0.24
PKNOX1-208ENST00000558955 RFC4P35249 363 aa16.57■□□□□ 0.24
PKNOX1-208ENST00000558955 VSIG10Q8N0Z9 540 aa16.57■□□□□ 0.24
PKNOX1-208ENST00000558955 C4AP0C0L4 1744 aa16.56■□□□□ 0.24
PKNOX1-208ENST00000558955 HEG1Q9ULI3 1381 aa16.56■□□□□ 0.24
PKNOX1-208ENST00000558955 DCAF8L1A6NGE4 600 aa16.56■□□□□ 0.24
PKNOX1-208ENST00000558955 HTATSF1O43719 755 aaKnown RBP16.56■□□□□ 0.24
PKNOX1-208ENST00000558955 GYS1P13807 737 aa16.56■□□□□ 0.24
PKNOX1-208ENST00000558955 NFE2L2Q16236 605 aa16.56■□□□□ 0.24
PKNOX1-208ENST00000558955 SRP68Q9UHB9 627 aaKnown RBP16.56■□□□□ 0.24
PKNOX1-208ENST00000558955 DLG5Q8TDM6 1919 aa16.55■□□□□ 0.24
PKNOX1-208ENST00000558955 MAPK8IP3Q9UPT6 1336 aa16.55■□□□□ 0.24
PKNOX1-208ENST00000558955 MMP10P09238 476 aa16.55■□□□□ 0.24
PKNOX1-208ENST00000558955 PNNQ9H307 717 aaKnown RBP16.55■□□□□ 0.24
PKNOX1-208ENST00000558955 ZBTB1Q9Y2K1 713 aa16.55■□□□□ 0.24
PKNOX1-208ENST00000558955 SOS1Q07889 1333 aaPredicted RBP16.54■□□□□ 0.24
PKNOX1-208ENST00000558955 ZNF316A6NFI3 1004 aaPredicted RBP16.54■□□□□ 0.24
PKNOX1-208ENST00000558955 FMNL2Q96PY5 1086 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms