RNA–Protein interactions for RNA: ENST00000558739.1

SMAD3-206, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-206ENST00000558739 RRS1Q15050 365 aaKnown RBP17.02■□□□□ 0.32
SMAD3-206ENST00000558739 HDGFL2Q7Z4V5 671 aaPredicted RBP17.02■□□□□ 0.32
SMAD3-206ENST00000558739 RAPGEF4Q8WZA2 1011 aa17.02■□□□□ 0.32
SMAD3-206ENST00000558739 SMARCC1Q92922 1105 aaPredicted RBP17.01■□□□□ 0.31
SMAD3-206ENST00000558739 L3MBTL2Q969R5 705 aa17.01■□□□□ 0.31
SMAD3-206ENST00000558739 CGNL1Q0VF96 1302 aa17■□□□□ 0.31
SMAD3-206ENST00000558739 DCAF5Q96JK2 942 aa17■□□□□ 0.31
SMAD3-206ENST00000558739 TATP17735 454 aaPredicted RBP16.99■□□□□ 0.31
SMAD3-206ENST00000558739 ASAP1Q9ULH1 1129 aa16.99■□□□□ 0.31
SMAD3-206ENST00000558739 RTL1A6NKG5 1358 aa16.99■□□□□ 0.31
SMAD3-206ENST00000558739 TIAM2Q8IVF5 1701 aa16.99■□□□□ 0.31
SMAD3-206ENST00000558739 TNRC18O15417 2968 aaPredicted RBP16.98■□□□□ 0.31
SMAD3-206ENST00000558739 RASSF7Q02833 373 aa16.98■□□□□ 0.31
SMAD3-206ENST00000558739 FAM161AQ3B820 660 aa16.98■□□□□ 0.31
SMAD3-206ENST00000558739 FOXN1O15353 648 aa16.97■□□□□ 0.31
SMAD3-206ENST00000558739 CCDC87Q9NVE4 849 aa16.97■□□□□ 0.31
SMAD3-206ENST00000558739 MYH14Q7Z406 1995 aaKnown RBP16.97■□□□□ 0.31
SMAD3-206ENST00000558739 COL5A3P25940 1745 aaPredicted RBP16.96■□□□□ 0.31
SMAD3-206ENST00000558739 GYS1P13807 737 aa16.96■□□□□ 0.31
SMAD3-206ENST00000558739 CHRNA5P30532 468 aa16.96■□□□□ 0.31
SMAD3-206ENST00000558739 ATP6V1AP38606 617 aa16.96■□□□□ 0.31
SMAD3-206ENST00000558739 TMF1P82094 1093 aa16.96■□□□□ 0.31
SMAD3-206ENST00000558739 COG3Q96JB2 828 aa16.96■□□□□ 0.31
SMAD3-206ENST00000558739 MKRN1Q9UHC7 482 aaKnown RBP16.96■□□□□ 0.31
SMAD3-206ENST00000558739 KDRP35968 1356 aa16.95■□□□□ 0.3
SMAD3-206ENST00000558739 DALRD3Q5D0E6 543 aaKnown RBP16.95■□□□□ 0.3
SMAD3-206ENST00000558739 KDM6AO15550 1401 aaPredicted RBP16.95■□□□□ 0.3
SMAD3-206ENST00000558739 SMG6Q86US8 1419 aaKnown RBP16.95■□□□□ 0.3
SMAD3-206ENST00000558739 HMGB2P26583 209 aaKnown RBP16.94■□□□□ 0.3
SMAD3-206ENST00000558739 HSP90AB2PQ58FF8 381 aa16.94■□□□□ 0.3
SMAD3-206ENST00000558739 SLC4A9Q96Q91 983 aa16.94■□□□□ 0.3
SMAD3-206ENST00000558739 TERF2IPQ9NYB0 399 aa16.94■□□□□ 0.3
SMAD3-206ENST00000558739 PIM2Q9P1W9 311 aa16.94■□□□□ 0.3
SMAD3-206ENST00000558739 PDE4DIPQ5VU43 2346 aa16.94■□□□□ 0.3
SMAD3-206ENST00000558739 CCDC88AQ3V6T2 1871 aa16.94■□□□□ 0.3
SMAD3-206ENST00000558739 NLGN1Q8N2Q7 840 aa16.93■□□□□ 0.3
SMAD3-206ENST00000558739 ARHGEF1Q92888 912 aaKnown RBP16.93■□□□□ 0.3
SMAD3-206ENST00000558739 TRAPPC3LQ5T215 181 aa16.92■□□□□ 0.3
SMAD3-206ENST00000558739 PARP3Q9Y6F1 533 aa16.92■□□□□ 0.3
SMAD3-206ENST00000558739 DDR1Q08345 913 aa16.91■□□□□ 0.3
SMAD3-206ENST00000558739 RTCBQ9Y3I0 505 aaKnown RBP16.91■□□□□ 0.3
SMAD3-206ENST00000558739 POTECB2RU33 542 aa16.9■□□□□ 0.3
SMAD3-206ENST00000558739 VEGFAP15692 232 aaPredicted RBP16.9■□□□□ 0.3
SMAD3-206ENST00000558739 ATG3Q9NT62 314 aa16.9■□□□□ 0.3
SMAD3-206ENST00000558739 TMOD3Q9NYL9 352 aa16.9■□□□□ 0.3
SMAD3-206ENST00000558739 NKX1-1Q15270 411 aaPredicted RBP16.89■□□□□ 0.29
SMAD3-206ENST00000558739 SRP68Q9UHB9 627 aaKnown RBP16.89■□□□□ 0.29
SMAD3-206ENST00000558739 INSRP06213 1382 aa16.89■□□□□ 0.29
SMAD3-206ENST00000558739 GLTPD2A6NH11 291 aa16.88■□□□□ 0.29
SMAD3-206ENST00000558739 GGNBP2Q9H3C7 697 aa16.88■□□□□ 0.29
SMAD3-206ENST00000558739 NCAPD2Q15021 1401 aa16.87■□□□□ 0.29
SMAD3-206ENST00000558739 POTEIP0CG38 1075 aa16.87■□□□□ 0.29
SMAD3-206ENST00000558739 POTEJP0CG39 1038 aa16.87■□□□□ 0.29
SMAD3-206ENST00000558739 FKBP8Q14318 412 aa16.87■□□□□ 0.29
SMAD3-206ENST00000558739 PRDM10Q9NQV6 1147 aa16.87■□□□□ 0.29
SMAD3-206ENST00000558739 ZNF831Q5JPB2 1677 aa16.87■□□□□ 0.29
SMAD3-206ENST00000558739 RFC4P35249 363 aa16.86■□□□□ 0.29
SMAD3-206ENST00000558739 SIN3AQ96ST3 1273 aa16.86■□□□□ 0.29
SMAD3-206ENST00000558739 PCDH10Q9P2E7 1040 aa16.86■□□□□ 0.29
SMAD3-206ENST00000558739 ZC3H4Q9UPT8 1303 aaKnown RBP16.86■□□□□ 0.29
SMAD3-206ENST00000558739 ADAMTS7Q9UKP4 1686 aa16.85■□□□□ 0.29
SMAD3-206ENST00000558739 DLEC1Q9Y238 1755 aa16.85■□□□□ 0.29
SMAD3-206ENST00000558739 ABHD8Q96I13 439 aa16.85■□□□□ 0.29
SMAD3-206ENST00000558739 CREBZFQ9NS37 354 aa16.85■□□□□ 0.29
SMAD3-206ENST00000558739 FLT4P35916 1363 aa16.85■□□□□ 0.29
SMAD3-206ENST00000558739 CNTNAP1P78357 1384 aa16.85■□□□□ 0.29
SMAD3-206ENST00000558739 AFDNP55196 1824 aaKnown RBP16.84■□□□□ 0.29
SMAD3-206ENST00000558739 ADRA2BP18089 450 aa16.84■□□□□ 0.29
SMAD3-206ENST00000558739 LMNB1P20700 586 aa16.84■□□□□ 0.29
SMAD3-206ENST00000558739 LBX1P52954 281 aa16.84■□□□□ 0.29
SMAD3-206ENST00000558739 CNTNAP4Q9C0A0 1308 aa16.84■□□□□ 0.29
SMAD3-206ENST00000558739 VIRMAQ69YN4 1812 aaKnown RBP16.84■□□□□ 0.29
SMAD3-206ENST00000558739 KIF20BQ96Q89 1820 aa16.84■□□□□ 0.29
SMAD3-206ENST00000558739 FYB1O15117 783 aa16.83■□□□□ 0.28
SMAD3-206ENST00000558739 RBM42Q9BTD8 480 aaKnown RBP16.83■□□□□ 0.28
SMAD3-206ENST00000558739 NFKBIEO00221 500 aa16.82■□□□□ 0.28
SMAD3-206ENST00000558739 RPS6KA4O75676 772 aa16.82■□□□□ 0.28
SMAD3-206ENST00000558739 CTCFP49711 727 aaPredicted RBP16.82■□□□□ 0.28
SMAD3-206ENST00000558739 EMILIN1Q9Y6C2 1016 aa16.82■□□□□ 0.28
SMAD3-206ENST00000558739 POLRMTO00411 1230 aaKnown RBP16.81■□□□□ 0.28
SMAD3-206ENST00000558739 PHKG2P15735 406 aa16.81■□□□□ 0.28
SMAD3-206ENST00000558739 CARD11Q9BXL7 1154 aa16.81■□□□□ 0.28
SMAD3-206ENST00000558739 TJP1Q07157 1748 aa16.81■□□□□ 0.28
SMAD3-206ENST00000558739 USP42Q9H9J4 1324 aaKnown RBP16.8■□□□□ 0.28
SMAD3-206ENST00000558739 ANKRD26Q9UPS8 1709 aa16.8■□□□□ 0.28
SMAD3-206ENST00000558739 VEGFBP49765 207 aa16.8■□□□□ 0.28
SMAD3-206ENST00000558739 RC3H1Q5TC82 1133 aaKnown RBP16.8■□□□□ 0.28
SMAD3-206ENST00000558739 SPG7Q9UQ90 795 aa16.8■□□□□ 0.28
SMAD3-206ENST00000558739 AIDAQ96BJ3 306 aa16.79■□□□□ 0.28
SMAD3-206ENST00000558739 DICER1Q9UPY3 1922 aaKnown RBP16.78■□□□□ 0.28
SMAD3-206ENST00000558739 CHADLQ6NUI6 762 aa16.78■□□□□ 0.28
SMAD3-206ENST00000558739 NRXN2Q9P2S2 1712 aa16.78■□□□□ 0.28
SMAD3-206ENST00000558739 CARMIL3Q8ND23 1372 aa16.77■□□□□ 0.28
SMAD3-206ENST00000558739 HSPA8P11142 646 aaKnown RBP16.77■□□□□ 0.28
SMAD3-206ENST00000558739 CRKLP46109 303 aaKnown RBP16.77■□□□□ 0.28
SMAD3-206ENST00000558739 NEUROD1Q13562 356 aa16.77■□□□□ 0.28
SMAD3-206ENST00000558739 WBP1LQ9NX94 342 aa16.77■□□□□ 0.28
SMAD3-206ENST00000558739 PASKQ96RG2 1323 aa16.76■□□□□ 0.27
SMAD3-206ENST00000558739 MLLT1Q03111 559 aaPredicted RBP16.76■□□□□ 0.27
SMAD3-206ENST00000558739 IFNL2Q8IZJ0 200 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms