RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 TAF1LQ8IZX4 1826 aa11.09□□□□□ -0.63
TRAF3-205ENST00000558700 STK25O00506 426 aa11.09□□□□□ -0.63
TRAF3-205ENST00000558700 PPM1GO15355 546 aaPredicted RBP11.09□□□□□ -0.63
TRAF3-205ENST00000558700 NUBP1P53384 320 aa11.09□□□□□ -0.63
TRAF3-205ENST00000558700 LRRC4BQ9NT99 713 aa11.09□□□□□ -0.63
TRAF3-205ENST00000558700 WASHC2AQ641Q2 1341 aa11.09□□□□□ -0.63
TRAF3-205ENST00000558700 PTGER2P43116 358 aa11.08□□□□□ -0.64
TRAF3-205ENST00000558700 RYDENQ9NUL5 291 aaKnown RBP11.08□□□□□ -0.64
TRAF3-205ENST00000558700 PALLDQ8WX93 1383 aa11.07□□□□□ -0.64
TRAF3-205ENST00000558700 MAP3K5Q99683 1374 aa11.07□□□□□ -0.64
TRAF3-205ENST00000558700 SPDYE1Q8NFV5 336 aaPredicted RBP11.07□□□□□ -0.64
TRAF3-205ENST00000558700 AKT1S1Q96B36 256 aa11.07□□□□□ -0.64
TRAF3-205ENST00000558700 CCNL1Q9UK58 526 aaPredicted RBP11.07□□□□□ -0.64
TRAF3-205ENST00000558700 HMGB2P26583 209 aaKnown RBP11.06□□□□□ -0.64
TRAF3-205ENST00000558700 SLC16A10Q8TF71 515 aa11.06□□□□□ -0.64
TRAF3-205ENST00000558700 SGIP1Q9BQI5 828 aa11.06□□□□□ -0.64
TRAF3-205ENST00000558700 POLKQ9UBT6 870 aa11.06□□□□□ -0.64
TRAF3-205ENST00000558700 SPG7Q9UQ90 795 aa11.06□□□□□ -0.64
TRAF3-205ENST00000558700 C4BP0C0L5 1744 aa11.06□□□□□ -0.64
TRAF3-205ENST00000558700 CYP27B1O15528 508 aa11.05□□□□□ -0.64
TRAF3-205ENST00000558700 GTPBP6O43824 516 aaPredicted RBP11.05□□□□□ -0.64
TRAF3-205ENST00000558700 TFCP2L1Q9NZI6 479 aa11.05□□□□□ -0.64
TRAF3-205ENST00000558700 PNPLA7Q6ZV29 1317 aa11.05□□□□□ -0.64
TRAF3-205ENST00000558700 TNNT2P45379 298 aaPredicted RBP11.04□□□□□ -0.64
TRAF3-205ENST00000558700 NKX1-1Q15270 411 aaPredicted RBP11.04□□□□□ -0.64
TRAF3-205ENST00000558700 ARXQ96QS3 562 aa11.04□□□□□ -0.64
TRAF3-205ENST00000558700 EYA1Q99502 592 aa11.04□□□□□ -0.64
TRAF3-205ENST00000558700 FHDC1Q9C0D6 1143 aaPredicted RBP11.04□□□□□ -0.64
TRAF3-205ENST00000558700 PANK3Q9H999 370 aa11.04□□□□□ -0.64
TRAF3-205ENST00000558700 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.04□□□□□ -0.64
TRAF3-205ENST00000558700 YY1P25490 414 aa11.03□□□□□ -0.64
TRAF3-205ENST00000558700 POLD1P28340 1107 aa11.03□□□□□ -0.64
TRAF3-205ENST00000558700 KCNQ4P56696 695 aa11.03□□□□□ -0.64
TRAF3-205ENST00000558700 EIF4A2Q14240 407 aaKnown RBP11.03□□□□□ -0.64
TRAF3-205ENST00000558700 SMARCC1Q92922 1105 aaPredicted RBP11.03□□□□□ -0.64
TRAF3-205ENST00000558700 UBR3Q6ZT12 1888 aa11.03□□□□□ -0.64
TRAF3-205ENST00000558700 IGSF1Q8N6C5 1336 aa11.03□□□□□ -0.64
TRAF3-205ENST00000558700 CHD4Q14839 1912 aa11.02□□□□□ -0.65
TRAF3-205ENST00000558700 MPRIPQ6WCQ1 1025 aa11.02□□□□□ -0.65
TRAF3-205ENST00000558700 SYT17Q9BSW7 474 aa11.02□□□□□ -0.65
TRAF3-205ENST00000558700 KNSTRNQ9Y448 316 aa11.02□□□□□ -0.65
TRAF3-205ENST00000558700 ZNF831Q5JPB2 1677 aa11.01□□□□□ -0.65
TRAF3-205ENST00000558700 MORC1Q86VD1 984 aa11.01□□□□□ -0.65
TRAF3-205ENST00000558700 TMOD3Q9NYL9 352 aa11.01□□□□□ -0.65
TRAF3-205ENST00000558700 PHKG2P15735 406 aa11□□□□□ -0.65
TRAF3-205ENST00000558700 IFNL2Q8IZJ0 200 aa11□□□□□ -0.65
TRAF3-205ENST00000558700 COL5A3P25940 1745 aaPredicted RBP10.99□□□□□ -0.65
TRAF3-205ENST00000558700 PRR29P0C7W0 189 aa10.99□□□□□ -0.65
TRAF3-205ENST00000558700 CHRM1P11229 460 aaPredicted RBP10.99□□□□□ -0.65
TRAF3-205ENST00000558700 FLAD1Q8NFF5 587 aa10.99□□□□□ -0.65
TRAF3-205ENST00000558700 AK7Q96M32 723 aa10.99□□□□□ -0.65
TRAF3-205ENST00000558700 KIF7Q2M1P5 1343 aa10.99□□□□□ -0.65
TRAF3-205ENST00000558700 HSP90AB1P08238 724 aaKnown RBP10.98□□□□□ -0.65
TRAF3-205ENST00000558700 PIGBQ92521 554 aa10.98□□□□□ -0.65
TRAF3-205ENST00000558700 CLEC11AQ9Y240 323 aa10.98□□□□□ -0.65
TRAF3-205ENST00000558700 STK24Q9Y6E0 443 aa10.98□□□□□ -0.65
TRAF3-205ENST00000558700 KDRP35968 1356 aa10.98□□□□□ -0.65
TRAF3-205ENST00000558700 CICQ96RK0 1608 aaPredicted RBP10.98□□□□□ -0.65
TRAF3-205ENST00000558700 SCN11AQ9UI33 1791 aa10.98□□□□□ -0.65
TRAF3-205ENST00000558700 COL23A1Q86Y22 540 aaPredicted RBP10.97□□□□□ -0.65
TRAF3-205ENST00000558700 RBM42Q9BTD8 480 aaKnown RBP10.97□□□□□ -0.65
TRAF3-205ENST00000558700 KDM6AO15550 1401 aaPredicted RBP10.97□□□□□ -0.65
TRAF3-205ENST00000558700 VIRMAQ69YN4 1812 aaKnown RBP10.96□□□□□ -0.65
TRAF3-205ENST00000558700 LOC102724428A0A0B4J2F2 783 aa10.96□□□□□ -0.65
TRAF3-205ENST00000558700 SIK1P57059 783 aa10.96□□□□□ -0.65
TRAF3-205ENST00000558700 AMOTQ4VCS5 1084 aa10.96□□□□□ -0.65
TRAF3-205ENST00000558700 PLEKHO1Q53GL0 409 aaPredicted RBP10.96□□□□□ -0.65
TRAF3-205ENST00000558700 MSL1Q68DK7 614 aa10.96□□□□□ -0.65
TRAF3-205ENST00000558700 ZNF530Q6P9A1 599 aaPredicted RBP10.96□□□□□ -0.65
TRAF3-205ENST00000558700 DCAF5Q96JK2 942 aa10.96□□□□□ -0.65
TRAF3-205ENST00000558700 SSFA2P28290 1259 aa10.95□□□□□ -0.66
TRAF3-205ENST00000558700 CACNB1Q02641 598 aaPredicted RBP10.95□□□□□ -0.66
TRAF3-205ENST00000558700 MRC1P22897 1456 aa10.94□□□□□ -0.66
TRAF3-205ENST00000558700 ERVV-2B6SEH9 535 aa10.94□□□□□ -0.66
TRAF3-205ENST00000558700 PHF14O94880 888 aa10.94□□□□□ -0.66
TRAF3-205ENST00000558700 C1orf141Q5JVX7 400 aa10.94□□□□□ -0.66
TRAF3-205ENST00000558700 ASAP1Q9ULH1 1129 aa10.94□□□□□ -0.66
TRAF3-205ENST00000558700 C4AP0C0L4 1744 aa10.94□□□□□ -0.66
TRAF3-205ENST00000558700 NPC1L1Q9UHC9 1359 aa10.93□□□□□ -0.66
TRAF3-205ENST00000558700 TJP1Q07157 1748 aa10.93□□□□□ -0.66
TRAF3-205ENST00000558700 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.93□□□□□ -0.66
TRAF3-205ENST00000558700 GNPATO15228 680 aa10.93□□□□□ -0.66
TRAF3-205ENST00000558700 ATP6V1AP38606 617 aa10.93□□□□□ -0.66
TRAF3-205ENST00000558700 GPR162Q16538 588 aa10.93□□□□□ -0.66
TRAF3-205ENST00000558700 AEBP1Q8IUX7 1158 aa10.93□□□□□ -0.66
TRAF3-205ENST00000558700 PELP1Q8IZL8 1130 aaKnown RBP10.93□□□□□ -0.66
TRAF3-205ENST00000558700 LINC00116Q8NCU8 138 aa10.93□□□□□ -0.66
TRAF3-205ENST00000558700 CREBZFQ9NS37 354 aa10.93□□□□□ -0.66
TRAF3-205ENST00000558700 ADAMTS7Q9UKP4 1686 aa10.92□□□□□ -0.66
TRAF3-205ENST00000558700 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.92□□□□□ -0.66
TRAF3-205ENST00000558700 CABP4P57796 275 aa10.92□□□□□ -0.66
TRAF3-205ENST00000558700 ITPK1Q13572 414 aa10.92□□□□□ -0.66
TRAF3-205ENST00000558700 SULT6B1Q6IMI4 303 aa10.92□□□□□ -0.66
TRAF3-205ENST00000558700 NLGN2Q8NFZ4 835 aa10.92□□□□□ -0.66
TRAF3-205ENST00000558700 ZFP91Q96JP5 570 aaPredicted RBP10.92□□□□□ -0.66
TRAF3-205ENST00000558700 ATG3Q9NT62 314 aa10.92□□□□□ -0.66
TRAF3-205ENST00000558700 COL3A1P02461 1466 aaPredicted RBP10.92□□□□□ -0.66
TRAF3-205ENST00000558700 IL13P35225 146 aa10.91□□□□□ -0.66
TRAF3-205ENST00000558700 MTHFSP49914 203 aa10.91□□□□□ -0.66
TRAF3-205ENST00000558700 KIF13BQ9NQT8 1826 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms