RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 BCL11AQ9H165 835 aa9.08□□□□□ -0.96
VPS13C-206ENST00000558338 MARF1Q9Y4F3 1742 aaKnown RBP9.08□□□□□ -0.96
VPS13C-206ENST00000558338 CHD2O14647 1828 aaKnown RBP9.07□□□□□ -0.96
VPS13C-206ENST00000558338 NUTM2FA1L443 756 aa9.07□□□□□ -0.96
VPS13C-206ENST00000558338 IGSF3O75054 1194 aa9.07□□□□□ -0.96
VPS13C-206ENST00000558338 MFAP1P55081 439 aaKnown RBP9.07□□□□□ -0.96
VPS13C-206ENST00000558338 ZMYND15Q9H091 742 aa9.07□□□□□ -0.96
VPS13C-206ENST00000558338 C1orf115Q9H7X2 142 aa9.07□□□□□ -0.96
VPS13C-206ENST00000558338 RGS12O14924 1447 aa9.07□□□□□ -0.96
VPS13C-206ENST00000558338 ZBTB7CA1YPR0 619 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 ELL2O00472 640 aaPredicted RBP9.06□□□□□ -0.96
VPS13C-206ENST00000558338 DCTN1Q14203 1278 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 ANKRD45Q5TZF3 282 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 ASTLQ6HA08 431 aaPredicted RBP9.06□□□□□ -0.96
VPS13C-206ENST00000558338 RPAP2Q8IXW5 612 aaPredicted RBP9.06□□□□□ -0.96
VPS13C-206ENST00000558338 SLC39A7Q92504 469 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 NECTIN2Q92692 538 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 BABAM1Q9NWV8 329 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 N4BP2Q86UW6 1770 aaPredicted RBP9.06□□□□□ -0.96
VPS13C-206ENST00000558338 FAM208AQ9UK61 1670 aaKnown RBP9.06□□□□□ -0.96
VPS13C-206ENST00000558338 C7P10643 843 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 RBM25P49756 843 aaKnown RBP9.06□□□□□ -0.96
VPS13C-206ENST00000558338 GSE1Q14687 1217 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 HSCBQ8IWL3 235 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 FAM163AQ96GL9 167 aaPredicted RBP9.06□□□□□ -0.96
VPS13C-206ENST00000558338 TBC1D2Q9BYX2 928 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 CACNA1FO60840 1977 aa9.06□□□□□ -0.96
VPS13C-206ENST00000558338 MCM10Q7L590 875 aa9.05□□□□□ -0.96
VPS13C-206ENST00000558338 ANKRD44Q8N8A2 993 aa9.05□□□□□ -0.96
VPS13C-206ENST00000558338 TSPYL4Q9UJ04 414 aa9.05□□□□□ -0.96
VPS13C-206ENST00000558338 PHRF1Q9P1Y6 1649 aaKnown RBP9.05□□□□□ -0.96
VPS13C-206ENST00000558338 ATP10DQ9P241 1426 aa9.05□□□□□ -0.96
VPS13C-206ENST00000558338 HMMRO75330 724 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 CCT4P50991 539 aaKnown RBP9.04□□□□□ -0.96
VPS13C-206ENST00000558338 NLRP6P59044 892 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 MSH6P52701 1360 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 LTN1O94822 1766 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 PXDNLA1KZ92 1463 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 CDC45O75419 566 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 KCNA6P17658 529 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 MTHFSDQ2M296 383 aaKnown RBP9.04□□□□□ -0.96
VPS13C-206ENST00000558338 SNX21Q969T3 373 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 ANTXR1Q9H6X2 564 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 DCTPP1Q9H773 170 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 MAP3K5Q99683 1374 aa9.04□□□□□ -0.96
VPS13C-206ENST00000558338 NWD1Q149M9 1564 aa9.03□□□□□ -0.96
VPS13C-206ENST00000558338 SOX12O15370 315 aa9.03□□□□□ -0.96
VPS13C-206ENST00000558338 ATMINO43313 823 aaPredicted RBP9.03□□□□□ -0.96
VPS13C-206ENST00000558338 HOXC9P31274 260 aa9.03□□□□□ -0.96
VPS13C-206ENST00000558338 ANKLE2Q86XL3 938 aa9.03□□□□□ -0.96
VPS13C-206ENST00000558338 SIRT2Q8IXJ6 389 aa9.03□□□□□ -0.96
VPS13C-206ENST00000558338 EYA1Q99502 592 aa9.03□□□□□ -0.96
VPS13C-206ENST00000558338 STK31Q9BXU1 1019 aa9.03□□□□□ -0.96
VPS13C-206ENST00000558338 CHMP4AQ9BY43 222 aa9.03□□□□□ -0.96
VPS13C-206ENST00000558338 ADGRL3Q9HAR2 1447 aa9.03□□□□□ -0.96
VPS13C-206ENST00000558338 GNAT3A8MTJ3 354 aa9.02□□□□□ -0.96
VPS13C-206ENST00000558338 FRAT2O75474 233 aaPredicted RBP9.02□□□□□ -0.96
VPS13C-206ENST00000558338 SLKQ9H2G2 1235 aaPredicted RBP9.02□□□□□ -0.96
VPS13C-206ENST00000558338 CHMP5Q9NZZ3 219 aa9.02□□□□□ -0.96
VPS13C-206ENST00000558338 NFAT5O94916 1531 aa9.02□□□□□ -0.97
VPS13C-206ENST00000558338 CCDC30Q5VVM6 783 aa9.02□□□□□ -0.97
VPS13C-206ENST00000558338 CEP85Q6P2H3 762 aa9.02□□□□□ -0.97
VPS13C-206ENST00000558338 LMOD2Q6P5Q4 547 aa9.02□□□□□ -0.97
VPS13C-206ENST00000558338 ABTB2Q8N961 1025 aa9.02□□□□□ -0.97
VPS13C-206ENST00000558338 MS4A3Q96HJ5 214 aa9.02□□□□□ -0.97
VPS13C-206ENST00000558338 PHF8Q9UPP1 1060 aa9.02□□□□□ -0.97
VPS13C-206ENST00000558338 NCOA3Q9Y6Q9 1424 aa9.02□□□□□ -0.97
VPS13C-206ENST00000558338 ADAMTSL3P82987 1691 aa9.01□□□□□ -0.97
VPS13C-206ENST00000558338 CASC1Q6TDU7 716 aa9.01□□□□□ -0.97
VPS13C-206ENST00000558338 SPOCK2Q92563 424 aa9.01□□□□□ -0.97
VPS13C-206ENST00000558338 TBC1D9Q6ZT07 1266 aa9□□□□□ -0.97
VPS13C-206ENST00000558338 KCNH5Q8NCM2 988 aa9□□□□□ -0.97
VPS13C-206ENST00000558338 SCUBE2Q9NQ36 999 aa9□□□□□ -0.97
VPS13C-206ENST00000558338 CIZ1Q9ULV3 898 aaPredicted RBP9□□□□□ -0.97
VPS13C-206ENST00000558338 MED1Q15648 1581 aaPredicted RBP9□□□□□ -0.97
VPS13C-206ENST00000558338 KRT24Q2M2I5 525 aa9□□□□□ -0.97
VPS13C-206ENST00000558338 TTC22Q5TAA0 569 aa9□□□□□ -0.97
VPS13C-206ENST00000558338 PLEKHM2Q8IWE5 1019 aa9□□□□□ -0.97
VPS13C-206ENST00000558338 LMO7Q8WWI1 1683 aa9□□□□□ -0.97
VPS13C-206ENST00000558338 SETD1BQ9UPS6 1966 aaKnown RBP8.99□□□□□ -0.97
VPS13C-206ENST00000558338 KIF1AQ12756 1690 aa8.99□□□□□ -0.97
VPS13C-206ENST00000558338 FOXO3O43524 673 aa8.99□□□□□ -0.97
VPS13C-206ENST00000558338 GNAI3P08754 354 aa8.99□□□□□ -0.97
VPS13C-206ENST00000558338 PTMSP20962 102 aa8.99□□□□□ -0.97
VPS13C-206ENST00000558338 OVOS2A0A0G2JMS6 1433 aa8.99□□□□□ -0.97
VPS13C-206ENST00000558338 PLEKHG5O94827 1062 aa8.98□□□□□ -0.97
VPS13C-206ENST00000558338 GNAI2P04899 355 aa8.98□□□□□ -0.97
VPS13C-206ENST00000558338 HSP90AB1P08238 724 aaKnown RBP8.98□□□□□ -0.97
VPS13C-206ENST00000558338 PDIA4P13667 645 aaKnown RBP8.98□□□□□ -0.97
VPS13C-206ENST00000558338 TAF7Q15545 349 aaPredicted RBP8.98□□□□□ -0.97
VPS13C-206ENST00000558338 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS13C-206ENST00000558338 IP6K1Q92551 441 aa8.98□□□□□ -0.97
VPS13C-206ENST00000558338 MEIS3Q99687 375 aa8.98□□□□□ -0.97
VPS13C-206ENST00000558338 SLIT3O75094 1523 aa8.98□□□□□ -0.97
VPS13C-206ENST00000558338 KDM3BQ7LBC6 1761 aa8.98□□□□□ -0.97
VPS13C-206ENST00000558338 LMTK3Q96Q04 1460 aa8.98□□□□□ -0.97
VPS13C-206ENST00000558338 NCAPD2Q15021 1401 aa8.98□□□□□ -0.97
VPS13C-206ENST00000558338 DDX11L8A8MPP1 907 aa8.98□□□□□ -0.97
VPS13C-206ENST00000558338 HOXB7P09629 217 aa8.98□□□□□ -0.97
VPS13C-206ENST00000558338 NPHP4O75161 1426 aaPredicted RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms