RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 EXOSC9Q06265 439 aaKnown RBP21.81■■□□□ 1.08
SNX1-203ENST00000558040 SIPA1L3O60292 1781 aaPredicted RBP21.81■■□□□ 1.08
SNX1-203ENST00000558040 ONECUT3O60422 494 aaPredicted RBP21.8■■□□□ 1.08
SNX1-203ENST00000558040 MIS18AQ9NYP9 233 aa21.79■■□□□ 1.08
SNX1-203ENST00000558040 NFATC2IPQ8NCF5 419 aa21.78■■□□□ 1.08
SNX1-203ENST00000558040 KDM3BQ7LBC6 1761 aa21.78■■□□□ 1.08
SNX1-203ENST00000558040 RBM6P78332 1123 aaKnown RBP21.77■■□□□ 1.08
SNX1-203ENST00000558040 MARCH10Q8NA82 808 aaPredicted RBP21.76■■□□□ 1.07
SNX1-203ENST00000558040 ZNF428Q96B54 188 aa21.76■■□□□ 1.07
SNX1-203ENST00000558040 TOGARAM1Q9Y4F4 1720 aa21.76■■□□□ 1.07
SNX1-203ENST00000558040 TWISTNBQ3B726 338 aaPredicted RBP21.75■■□□□ 1.07
SNX1-203ENST00000558040 SEPT12Q8IYM1 358 aa21.75■■□□□ 1.07
SNX1-203ENST00000558040 TMOD3Q9NYL9 352 aa21.75■■□□□ 1.07
SNX1-203ENST00000558040 SOS1Q07889 1333 aaPredicted RBP21.75■■□□□ 1.07
SNX1-203ENST00000558040 TTC5Q8N0Z6 440 aa21.73■■□□□ 1.07
SNX1-203ENST00000558040 C8orf58Q8NAV2 365 aa21.73■■□□□ 1.07
SNX1-203ENST00000558040 SUPT16HQ9Y5B9 1047 aaKnown RBP21.73■■□□□ 1.07
SNX1-203ENST00000558040 DOT1LQ8TEK3 1739 aa21.72■■□□□ 1.07
SNX1-203ENST00000558040 ZNF790Q6PG37 636 aa21.72■■□□□ 1.07
SNX1-203ENST00000558040 EIF4A1P60842 406 aaKnown RBP21.71■■□□□ 1.07
SNX1-203ENST00000558040 TSPYL6Q8N831 410 aa21.71■■□□□ 1.07
SNX1-203ENST00000558040 CHMP4AQ9BY43 222 aa21.71■■□□□ 1.07
SNX1-203ENST00000558040 ELL2O00472 640 aaPredicted RBP21.7■■□□□ 1.06
SNX1-203ENST00000558040 VAMP4O75379 141 aa21.7■■□□□ 1.06
SNX1-203ENST00000558040 RXRBP28702 533 aa21.7■■□□□ 1.06
SNX1-203ENST00000558040 RARSP54136 660 aaKnown RBP21.7■■□□□ 1.06
SNX1-203ENST00000558040 ITGB4P16144 1822 aa21.69■■□□□ 1.06
SNX1-203ENST00000558040 HOXB7P09629 217 aa21.69■■□□□ 1.06
SNX1-203ENST00000558040 ALDH1L2Q3SY69 923 aa21.69■■□□□ 1.06
SNX1-203ENST00000558040 BCL9O00512 1426 aa21.69■■□□□ 1.06
SNX1-203ENST00000558040 PAPPAQ13219 1627 aa21.69■■□□□ 1.06
SNX1-203ENST00000558040 KCNQ3O43525 872 aa21.68■■□□□ 1.06
SNX1-203ENST00000558040 SLC39A6Q13433 755 aa21.68■■□□□ 1.06
SNX1-203ENST00000558040 KRT24Q2M2I5 525 aa21.68■■□□□ 1.06
SNX1-203ENST00000558040 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.68■■□□□ 1.06
SNX1-203ENST00000558040 SYTL4Q96C24 671 aaPredicted RBP21.68■■□□□ 1.06
SNX1-203ENST00000558040 RNF123Q5XPI4 1314 aa21.67■■□□□ 1.06
SNX1-203ENST00000558040 PRIM1P49642 420 aaKnown RBP21.67■■□□□ 1.06
SNX1-203ENST00000558040 PIGBQ92521 554 aa21.67■■□□□ 1.06
SNX1-203ENST00000558040 FMNL2Q96PY5 1086 aa21.67■■□□□ 1.06
SNX1-203ENST00000558040 NEFLP07196 543 aa21.66■■□□□ 1.06
SNX1-203ENST00000558040 ILDR1Q86SU0 546 aaPredicted RBP21.66■■□□□ 1.06
SNX1-203ENST00000558040 SMC4Q9NTJ3 1288 aa21.66■■□□□ 1.06
SNX1-203ENST00000558040 RGS17Q9UGC6 210 aaPredicted RBP21.66■■□□□ 1.06
SNX1-203ENST00000558040 HEG1Q9ULI3 1381 aa21.65■■□□□ 1.06
SNX1-203ENST00000558040 RRP1P56182 461 aaKnown RBP21.65■■□□□ 1.06
SNX1-203ENST00000558040 KRT27Q7Z3Y8 459 aa21.65■■□□□ 1.06
SNX1-203ENST00000558040 ACSBG1Q96GR2 724 aa21.65■■□□□ 1.06
SNX1-203ENST00000558040 BCAR3O75815 825 aa21.64■■□□□ 1.05
SNX1-203ENST00000558040 SSH1Q8WYL5 1049 aa21.64■■□□□ 1.05
SNX1-203ENST00000558040 UBR2Q8IWV8 1755 aa21.64■■□□□ 1.05
SNX1-203ENST00000558040 GIGYF1O75420 1035 aaPredicted RBP21.63■■□□□ 1.05
SNX1-203ENST00000558040 CCDC30Q5VVM6 783 aa21.63■■□□□ 1.05
SNX1-203ENST00000558040 ZNF496Q96IT1 587 aaPredicted RBP21.63■■□□□ 1.05
SNX1-203ENST00000558040 KIF16BQ96L93 1317 aa21.62■■□□□ 1.05
SNX1-203ENST00000558040 KCPQ6ZWJ8 1503 aa21.62■■□□□ 1.05
SNX1-203ENST00000558040 SNRPA1P09661 255 aaKnown RBP21.62■■□□□ 1.05
SNX1-203ENST00000558040 CANXP27824 592 aaKnown RBP21.62■■□□□ 1.05
SNX1-203ENST00000558040 POTEAQ6S8J7 498 aa21.62■■□□□ 1.05
SNX1-203ENST00000558040 BCL2L13Q9BXK5 485 aa21.62■■□□□ 1.05
SNX1-203ENST00000558040 STK31Q9BXU1 1019 aa21.62■■□□□ 1.05
SNX1-203ENST00000558040 BRWD3Q6RI45 1802 aa21.62■■□□□ 1.05
SNX1-203ENST00000558040 KAT6BQ8WYB5 2073 aa21.61■■□□□ 1.05
SNX1-203ENST00000558040 NHSQ6T4R5 1651 aa21.61■■□□□ 1.05
SNX1-203ENST00000558040 BRPF1P55201 1214 aaPredicted RBP21.61■■□□□ 1.05
SNX1-203ENST00000558040 HDGFL1Q5TGJ6 251 aa21.61■■□□□ 1.05
SNX1-203ENST00000558040 ATG3Q9NT62 314 aa21.61■■□□□ 1.05
SNX1-203ENST00000558040 ASAP1Q9ULH1 1129 aa21.61■■□□□ 1.05
SNX1-203ENST00000558040 FAM196AQ6ZSG2 479 aa21.6■■□□□ 1.05
SNX1-203ENST00000558040 RGS12O14924 1447 aa21.59■■□□□ 1.05
SNX1-203ENST00000558040 SMARCC1Q92922 1105 aaPredicted RBP21.59■■□□□ 1.05
SNX1-203ENST00000558040 IPO8O15397 1037 aaKnown RBP21.58■■□□□ 1.05
SNX1-203ENST00000558040 PTCD1O75127 700 aaKnown RBP21.58■■□□□ 1.05
SNX1-203ENST00000558040 EIF2S2P20042 333 aaKnown RBP21.58■■□□□ 1.05
SNX1-203ENST00000558040 FAM182BQ5T319 152 aa21.58■■□□□ 1.05
SNX1-203ENST00000558040 VSIG10Q8N0Z9 540 aa21.58■■□□□ 1.05
SNX1-203ENST00000558040 MRPL50Q8N5N7 158 aaKnown RBP21.58■■□□□ 1.05
SNX1-203ENST00000558040 FRAT1Q92837 279 aaPredicted RBP21.58■■□□□ 1.05
SNX1-203ENST00000558040 KCNQ2O43526 872 aa21.57■■□□□ 1.04
SNX1-203ENST00000558040 C5P01031 1676 aa21.56■■□□□ 1.04
SNX1-203ENST00000558040 LAMB4A4D0S4 1761 aa21.56■■□□□ 1.04
SNX1-203ENST00000558040 TCERG1O14776 1098 aaKnown RBP21.56■■□□□ 1.04
SNX1-203ENST00000558040 ZKSCAN2Q63HK3 967 aa21.56■■□□□ 1.04
SNX1-203ENST00000558040 RBM42Q9BTD8 480 aaKnown RBP21.56■■□□□ 1.04
SNX1-203ENST00000558040 TEX13AQ9BXU3 409 aaPredicted RBP21.56■■□□□ 1.04
SNX1-203ENST00000558040 PLIN1O60240 522 aa21.55■■□□□ 1.04
SNX1-203ENST00000558040 MS4A1P11836 297 aa21.55■■□□□ 1.04
SNX1-203ENST00000558040 NECTIN2Q92692 538 aa21.55■■□□□ 1.04
SNX1-203ENST00000558040 SBF2Q86WG5 1849 aa21.55■■□□□ 1.04
SNX1-203ENST00000558040 PALLDQ8WX93 1383 aa21.54■■□□□ 1.04
SNX1-203ENST00000558040 SLC4A2P04920 1241 aa21.54■■□□□ 1.04
SNX1-203ENST00000558040 DBF4Q9UBU7 674 aaPredicted RBP21.54■■□□□ 1.04
SNX1-203ENST00000558040 NOB1Q9ULX3 412 aaKnown RBP21.54■■□□□ 1.04
SNX1-203ENST00000558040 CACNA1FO60840 1977 aa21.54■■□□□ 1.04
SNX1-203ENST00000558040 PRAMEF22A3QJZ6 481 aa21.53■■□□□ 1.04
SNX1-203ENST00000558040 ARHGAP45Q92619 1136 aa21.53■■□□□ 1.04
SNX1-203ENST00000558040 BCL11BQ9C0K0 894 aaPredicted RBP21.53■■□□□ 1.04
SNX1-203ENST00000558040 BTAF1O14981 1849 aa21.52■■□□□ 1.04
SNX1-203ENST00000558040 PDE3AQ14432 1141 aa21.52■■□□□ 1.04
SNX1-203ENST00000558040 ATF7IPQ6VMQ6 1270 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 158.2 ms