RNA–Protein interactions for RNA: ENST00000557866.1

SPG11-204, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 468 nt, Biotype non stop decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-204ENST00000557866 CCDC146Q8IYE0 955 aa9.8□□□□□ -0.84
SPG11-204ENST00000557866 NUDCQ9Y266 331 aa9.8□□□□□ -0.84
SPG11-204ENST00000557866 SUPT16HQ9Y5B9 1047 aaKnown RBP9.8□□□□□ -0.84
SPG11-204ENST00000557866 SSH2Q76I76 1423 aa9.8□□□□□ -0.84
SPG11-204ENST00000557866 TTC21BQ7Z4L5 1316 aa9.8□□□□□ -0.84
SPG11-204ENST00000557866 SMAPO00193 183 aa9.79□□□□□ -0.84
SPG11-204ENST00000557866 TSR3Q9UJK0 312 aaKnown RBP9.79□□□□□ -0.84
SPG11-204ENST00000557866 COL3A1P02461 1466 aaPredicted RBP9.79□□□□□ -0.84
SPG11-204ENST00000557866 PNPLA6Q8IY17 1366 aa9.78□□□□□ -0.84
SPG11-204ENST00000557866 HSPA2P54652 639 aa9.78□□□□□ -0.84
SPG11-204ENST00000557866 TTC13Q8NBP0 860 aa9.78□□□□□ -0.84
SPG11-204ENST00000557866 PMFBP1Q8TBY8 1022 aa9.78□□□□□ -0.84
SPG11-204ENST00000557866 WBP1LQ9NX94 342 aa9.78□□□□□ -0.84
SPG11-204ENST00000557866 POLKQ9UBT6 870 aa9.78□□□□□ -0.84
SPG11-204ENST00000557866 ANKARQ7Z5J8 1434 aa9.78□□□□□ -0.84
SPG11-204ENST00000557866 ZNF521Q96K83 1311 aa9.78□□□□□ -0.84
SPG11-204ENST00000557866 USP6P35125 1406 aa9.77□□□□□ -0.85
SPG11-204ENST00000557866 APAF1O14727 1248 aa9.77□□□□□ -0.85
SPG11-204ENST00000557866 PDE3BQ13370 1112 aa9.77□□□□□ -0.85
SPG11-204ENST00000557866 NUDT18Q6ZVK8 323 aa9.77□□□□□ -0.85
SPG11-204ENST00000557866 CFAP53Q96M91 514 aa9.77□□□□□ -0.85
SPG11-204ENST00000557866 TOPAZ1Q8N9V7 1692 aa9.77□□□□□ -0.85
SPG11-204ENST00000557866 SEMA3EO15041 775 aa9.76□□□□□ -0.85
SPG11-204ENST00000557866 PADI6Q6TGC4 694 aa9.76□□□□□ -0.85
SPG11-204ENST00000557866 HPS5Q9UPZ3 1129 aa9.76□□□□□ -0.85
SPG11-204ENST00000557866 AATKQ6ZMQ8 1374 aa9.75□□□□□ -0.85
SPG11-204ENST00000557866 CHD2O14647 1828 aaKnown RBP9.75□□□□□ -0.85
SPG11-204ENST00000557866 ADGRL3Q9HAR2 1447 aa9.75□□□□□ -0.85
SPG11-204ENST00000557866 C3orf80F5H4A9 247 aa9.75□□□□□ -0.85
SPG11-204ENST00000557866 PPP4CP60510 307 aa9.75□□□□□ -0.85
SPG11-204ENST00000557866 SAMD7Q7Z3H4 446 aa9.75□□□□□ -0.85
SPG11-204ENST00000557866 NGDNQ8NEJ9 315 aaKnown RBP9.75□□□□□ -0.85
SPG11-204ENST00000557866 COG3Q96JB2 828 aa9.75□□□□□ -0.85
SPG11-204ENST00000557866 EMILIN1Q9Y6C2 1016 aa9.75□□□□□ -0.85
SPG11-204ENST00000557866 NWD1Q149M9 1564 aa9.75□□□□□ -0.85
SPG11-204ENST00000557866 SHPRHQ149N8 1683 aa9.74□□□□□ -0.85
SPG11-204ENST00000557866 MON2Q7Z3U7 1717 aa9.74□□□□□ -0.85
SPG11-204ENST00000557866 RUNDC1Q96C34 613 aa9.74□□□□□ -0.85
SPG11-204ENST00000557866 RNF123Q5XPI4 1314 aa9.74□□□□□ -0.85
SPG11-204ENST00000557866 OVOS2A0A0J9YW53 1432 aa9.73□□□□□ -0.85
SPG11-204ENST00000557866 OVOS2Q6IE36 1432 aa9.73□□□□□ -0.85
SPG11-204ENST00000557866 LMTK3Q96Q04 1460 aa9.73□□□□□ -0.85
SPG11-204ENST00000557866 AKAP12Q02952 1782 aa9.73□□□□□ -0.85
SPG11-204ENST00000557866 DIAPH1O60610 1272 aaKnown RBP9.73□□□□□ -0.85
SPG11-204ENST00000557866 U2AF1L5P0DN76 240 aaPredicted RBP9.73□□□□□ -0.85
SPG11-204ENST00000557866 U2AF1Q01081 240 aaKnown RBP eCLIP9.73□□□□□ -0.85
SPG11-204ENST00000557866 PTGDRQ13258 359 aa9.73□□□□□ -0.85
SPG11-204ENST00000557866 RRS1Q15050 365 aaKnown RBP9.73□□□□□ -0.85
SPG11-204ENST00000557866 SMYD5Q6GMV2 418 aa9.73□□□□□ -0.85
SPG11-204ENST00000557866 PROSER2Q86WR7 435 aaPredicted RBP9.73□□□□□ -0.85
SPG11-204ENST00000557866 PLEKHF1Q96S99 279 aa9.73□□□□□ -0.85
SPG11-204ENST00000557866 TTC21AQ8NDW8 1320 aa9.73□□□□□ -0.85
SPG11-204ENST00000557866 USP31Q70CQ4 1352 aa9.73□□□□□ -0.85
SPG11-204ENST00000557866 ANKRD26Q9UPS8 1709 aa9.73□□□□□ -0.85
SPG11-204ENST00000557866 NRKQ7Z2Y5 1582 aa9.72□□□□□ -0.85
SPG11-204ENST00000557866 PPM1GO15355 546 aaPredicted RBP9.72□□□□□ -0.85
SPG11-204ENST00000557866 ITGBL1O95965 494 aaPredicted RBP9.72□□□□□ -0.85
SPG11-204ENST00000557866 IL13P35225 146 aa9.72□□□□□ -0.85
SPG11-204ENST00000557866 IRX6P78412 446 aaPredicted RBP9.72□□□□□ -0.85
SPG11-204ENST00000557866 DUSP27Q5VZP5 1158 aa9.72□□□□□ -0.85
SPG11-204ENST00000557866 TRMT2AQ8IZ69 625 aaKnown RBP9.72□□□□□ -0.85
SPG11-204ENST00000557866 KIF20BQ96Q89 1820 aa9.72□□□□□ -0.85
SPG11-204ENST00000557866 IQSEC2Q5JU85 1478 aa9.72□□□□□ -0.85
SPG11-204ENST00000557866 NALCNQ8IZF0 1738 aa9.71□□□□□ -0.85
SPG11-204ENST00000557866 FMN2Q9NZ56 1722 aa9.71□□□□□ -0.85
SPG11-204ENST00000557866 U2SURPO15042 1029 aaKnown RBP9.71□□□□□ -0.86
SPG11-204ENST00000557866 NEFLP07196 543 aa9.71□□□□□ -0.86
SPG11-204ENST00000557866 SLFN5Q08AF3 891 aa9.71□□□□□ -0.86
SPG11-204ENST00000557866 TCP11L2Q8N4U5 519 aa9.71□□□□□ -0.86
SPG11-204ENST00000557866 RRP7AQ9Y3A4 280 aaKnown RBP9.71□□□□□ -0.86
SPG11-204ENST00000557866 TESPA1A2RU30 521 aaPredicted RBP9.7□□□□□ -0.86
SPG11-204ENST00000557866 C14orf37Q86TY3 774 aa9.7□□□□□ -0.86
SPG11-204ENST00000557866 WWC1Q8IX03 1113 aa9.7□□□□□ -0.86
SPG11-204ENST00000557866 NGEFQ8N5V2 710 aa9.7□□□□□ -0.86
SPG11-204ENST00000557866 ORAI2Q96SN7 254 aa9.7□□□□□ -0.86
SPG11-204ENST00000557866 TMEM94Q12767 1356 aa9.7□□□□□ -0.86
SPG11-204ENST00000557866 ITSN1Q15811 1721 aa9.69□□□□□ -0.86
SPG11-204ENST00000557866 ESCO1Q5FWF5 840 aa9.69□□□□□ -0.86
SPG11-204ENST00000557866 VSIG10Q8N0Z9 540 aa9.69□□□□□ -0.86
SPG11-204ENST00000557866 NECTIN2Q92692 538 aa9.69□□□□□ -0.86
SPG11-204ENST00000557866 EYA1Q99502 592 aa9.69□□□□□ -0.86
SPG11-204ENST00000557866 RSPH6AQ9H0K4 717 aa9.69□□□□□ -0.86
SPG11-204ENST00000557866 C19orf44Q9H6X5 657 aa9.69□□□□□ -0.86
SPG11-204ENST00000557866 CDK12Q9NYV4 1490 aaPredicted RBP9.69□□□□□ -0.86
SPG11-204ENST00000557866 RCAN3Q9UKA8 241 aa9.69□□□□□ -0.86
SPG11-204ENST00000557866 RGS20O76081 388 aa9.68□□□□□ -0.86
SPG11-204ENST00000557866 FCHSD2O94868 740 aa9.68□□□□□ -0.86
SPG11-204ENST00000557866 KCNC4Q03721 635 aa9.68□□□□□ -0.86
SPG11-204ENST00000557866 CCDC27Q2M243 656 aa9.68□□□□□ -0.86
SPG11-204ENST00000557866 NUTM2GQ5VZR2 741 aa9.68□□□□□ -0.86
SPG11-204ENST00000557866 C1orf167Q5SNV9 1468 aa9.67□□□□□ -0.86
SPG11-204ENST00000557866 MAP3K19Q56UN5 1328 aa9.67□□□□□ -0.86
SPG11-204ENST00000557866 A0A0G2JS52 829 aa9.67□□□□□ -0.86
SPG11-204ENST00000557866 TMPOP42166 694 aaKnown RBP9.67□□□□□ -0.86
SPG11-204ENST00000557866 SLC4A3P48751 1232 aa9.67□□□□□ -0.86
SPG11-204ENST00000557866 EIF4A2Q14240 407 aaKnown RBP9.67□□□□□ -0.86
SPG11-204ENST00000557866 NEUROD2Q15784 382 aa9.67□□□□□ -0.86
SPG11-204ENST00000557866 HSP90AB2PQ58FF8 381 aa9.67□□□□□ -0.86
SPG11-204ENST00000557866 RGPD8O14715 1765 aaPredicted RBP9.67□□□□□ -0.86
SPG11-204ENST00000557866 NCOA3Q9Y6Q9 1424 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms