RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TOM1O60784 492 aa15.9■□□□□ 0.14
SHMT2-229ENST00000557348 SLC4A2P04920 1241 aa15.9■□□□□ 0.14
SHMT2-229ENST00000557348 HSP90AB1P08238 724 aaKnown RBP15.9■□□□□ 0.14
SHMT2-229ENST00000557348 FAM161AQ3B820 660 aa15.9■□□□□ 0.14
SHMT2-229ENST00000557348 RGPD2P0DJD1 1756 aa15.9■□□□□ 0.14
SHMT2-229ENST00000557348 ADAMTS7Q9UKP4 1686 aa15.9■□□□□ 0.14
SHMT2-229ENST00000557348 CCT4P50991 539 aaKnown RBP15.89■□□□□ 0.13
SHMT2-229ENST00000557348 PRDM11Q9NQV5 511 aa15.89■□□□□ 0.13
SHMT2-229ENST00000557348 KRT24Q2M2I5 525 aa15.89■□□□□ 0.13
SHMT2-229ENST00000557348 SMC5Q8IY18 1101 aa15.89■□□□□ 0.13
SHMT2-229ENST00000557348 GCC1Q96CN9 775 aa15.89■□□□□ 0.13
SHMT2-229ENST00000557348 MIS18AQ9NYP9 233 aa15.89■□□□□ 0.13
SHMT2-229ENST00000557348 BTBD11A6QL63 1104 aa15.88■□□□□ 0.13
SHMT2-229ENST00000557348 PLEKHG5O94827 1062 aa15.88■□□□□ 0.13
SHMT2-229ENST00000557348 KDM3BQ7LBC6 1761 aa15.88■□□□□ 0.13
SHMT2-229ENST00000557348 PXDNLA1KZ92 1463 aa15.88■□□□□ 0.13
SHMT2-229ENST00000557348 RGS12O14924 1447 aa15.88■□□□□ 0.13
SHMT2-229ENST00000557348 WDR17Q8IZU2 1322 aa15.87■□□□□ 0.13
SHMT2-229ENST00000557348 CABLES1Q8TDN4 633 aa15.87■□□□□ 0.13
SHMT2-229ENST00000557348 RGS3P49796 1198 aa15.86■□□□□ 0.13
SHMT2-229ENST00000557348 EIF4A1P60842 406 aaKnown RBP15.86■□□□□ 0.13
SHMT2-229ENST00000557348 PIP4K2BP78356 416 aa15.86■□□□□ 0.13
SHMT2-229ENST00000557348 IFNL2Q8IZJ0 200 aa15.86■□□□□ 0.13
SHMT2-229ENST00000557348 CACNA1FO60840 1977 aa15.86■□□□□ 0.13
SHMT2-229ENST00000557348 RGPD5Q99666 1765 aa15.86■□□□□ 0.13
SHMT2-229ENST00000557348 HDGFL1Q5TGJ6 251 aa15.86■□□□□ 0.13
SHMT2-229ENST00000557348 LGR6Q9HBX8 967 aa15.86■□□□□ 0.13
SHMT2-229ENST00000557348 ABCA3Q99758 1704 aa15.85■□□□□ 0.13
SHMT2-229ENST00000557348 MPRIPQ6WCQ1 1025 aa15.85■□□□□ 0.13
SHMT2-229ENST00000557348 PDZRN3Q9UPQ7 1066 aa15.85■□□□□ 0.13
SHMT2-229ENST00000557348 AHDC1Q5TGY3 1603 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-229ENST00000557348 PKD1L3Q7Z443 1732 aa15.84■□□□□ 0.13
SHMT2-229ENST00000557348 FLIIQ13045 1269 aa15.84■□□□□ 0.13
SHMT2-229ENST00000557348 RPAP2Q8IXW5 612 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-229ENST00000557348 DCAF5Q96JK2 942 aa15.84■□□□□ 0.13
SHMT2-229ENST00000557348 COL5A2P05997 1499 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-229ENST00000557348 MEGF6O75095 1541 aa15.83■□□□□ 0.13
SHMT2-229ENST00000557348 PHKG2P15735 406 aa15.83■□□□□ 0.13
SHMT2-229ENST00000557348 CHRNA2Q15822 529 aa15.83■□□□□ 0.13
SHMT2-229ENST00000557348 PARP4Q9UKK3 1724 aaKnown RBP15.83■□□□□ 0.13
SHMT2-229ENST00000557348 MRC1P22897 1456 aa15.82■□□□□ 0.12
SHMT2-229ENST00000557348 HEG1Q9ULI3 1381 aa15.82■□□□□ 0.12
SHMT2-229ENST00000557348 FKBP5Q13451 457 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-229ENST00000557348 SLC52A2Q9HAB3 445 aa15.82■□□□□ 0.12
SHMT2-229ENST00000557348 PCDH11XQ9BZA7 1347 aa15.81■□□□□ 0.12
SHMT2-229ENST00000557348 PCDH11YQ9BZA8 1340 aa15.81■□□□□ 0.12
SHMT2-229ENST00000557348 HMMRO75330 724 aa15.81■□□□□ 0.12
SHMT2-229ENST00000557348 GNAI3P08754 354 aa15.81■□□□□ 0.12
SHMT2-229ENST00000557348 NUCB1Q02818 461 aa15.81■□□□□ 0.12
SHMT2-229ENST00000557348 CARD10Q9BWT7 1032 aa15.81■□□□□ 0.12
SHMT2-229ENST00000557348 TOM1L2Q6ZVM7 507 aa15.8■□□□□ 0.12
SHMT2-229ENST00000557348 DBF4Q9UBU7 674 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-229ENST00000557348 SIPA1L3O60292 1781 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-229ENST00000557348 C8orf34Q49A92 452 aa15.79■□□□□ 0.12
SHMT2-229ENST00000557348 ANKRD44Q8N8A2 993 aa15.79■□□□□ 0.12
SHMT2-229ENST00000557348 KDM6AO15550 1401 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-229ENST00000557348 GSE1Q14687 1217 aa15.79■□□□□ 0.12
SHMT2-229ENST00000557348 N4BP2Q86UW6 1770 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-229ENST00000557348 SCN11AQ9UI33 1791 aa15.79■□□□□ 0.12
SHMT2-229ENST00000557348 COL22A1Q8NFW1 1626 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-229ENST00000557348 CHD1LQ86WJ1 897 aa15.78■□□□□ 0.12
SHMT2-229ENST00000557348 UBE2Q2Q8WVN8 375 aa15.78■□□□□ 0.12
SHMT2-229ENST00000557348 EIF5BO60841 1220 aaKnown RBP15.77■□□□□ 0.12
SHMT2-229ENST00000557348 GIGYF1O75420 1035 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-229ENST00000557348 IL2RBP14784 551 aa15.77■□□□□ 0.12
SHMT2-229ENST00000557348 G2E3Q7L622 706 aa15.77■□□□□ 0.12
SHMT2-229ENST00000557348 HDAC5Q9UQL6 1122 aa15.77■□□□□ 0.12
SHMT2-229ENST00000557348 ROBO1Q9Y6N7 1651 aa15.77■□□□□ 0.12
SHMT2-229ENST00000557348 ATP10DQ9P241 1426 aa15.77■□□□□ 0.11
SHMT2-229ENST00000557348 GNAI2P04899 355 aa15.76■□□□□ 0.11
SHMT2-229ENST00000557348 HSPA1LP34931 641 aa15.76■□□□□ 0.11
SHMT2-229ENST00000557348 EVA1CP58658 441 aa15.76■□□□□ 0.11
SHMT2-229ENST00000557348 ZNF790Q6PG37 636 aa15.76■□□□□ 0.11
SHMT2-229ENST00000557348 SLC4A10Q6U841 1118 aa15.76■□□□□ 0.11
SHMT2-229ENST00000557348 SKAP1Q86WV1 359 aa15.76■□□□□ 0.11
SHMT2-229ENST00000557348 ZCRB1Q8TBF4 217 aaKnown RBP15.76■□□□□ 0.11
SHMT2-229ENST00000557348 HYPKQ9NX55 129 aa15.76■□□□□ 0.11
SHMT2-229ENST00000557348 COL14A1Q05707 1796 aaKnown RBP15.76■□□□□ 0.11
SHMT2-229ENST00000557348 VIRMAQ69YN4 1812 aaKnown RBP15.76■□□□□ 0.11
SHMT2-229ENST00000557348 TTC5Q8N0Z6 440 aa15.76■□□□□ 0.11
SHMT2-229ENST00000557348 ERVV-2B6SEH9 535 aa15.75■□□□□ 0.11
SHMT2-229ENST00000557348 DDX58O95786 925 aaKnown RBP15.75■□□□□ 0.11
SHMT2-229ENST00000557348 EIF2S2P20042 333 aaKnown RBP15.75■□□□□ 0.11
SHMT2-229ENST00000557348 CEP85Q6P2H3 762 aa15.75■□□□□ 0.11
SHMT2-229ENST00000557348 DCTPP1Q9H773 170 aa15.75■□□□□ 0.11
SHMT2-229ENST00000557348 UPF2Q9HAU5 1272 aaKnown RBP15.75■□□□□ 0.11
SHMT2-229ENST00000557348 ANO8Q9HCE9 1232 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-229ENST00000557348 IBTKQ9P2D0 1353 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-229ENST00000557348 CYP27B1O15528 508 aa15.74■□□□□ 0.11
SHMT2-229ENST00000557348 MEIS3Q99687 375 aa15.74■□□□□ 0.11
SHMT2-229ENST00000557348 C1orf115Q9H7X2 142 aa15.74■□□□□ 0.11
SHMT2-229ENST00000557348 CHPF2Q9P2E5 772 aa15.74■□□□□ 0.11
SHMT2-229ENST00000557348 F6X3S4 739 aa15.73■□□□□ 0.11
SHMT2-229ENST00000557348 CABP4P57796 275 aa15.73■□□□□ 0.11
SHMT2-229ENST00000557348 NKX1-1Q15270 411 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-229ENST00000557348 SRCIN1Q9C0H9 1055 aa15.73■□□□□ 0.11
SHMT2-229ENST00000557348 SIRT2Q8IXJ6 389 aa15.73■□□□□ 0.11
SHMT2-229ENST00000557348 DNAAF4Q8WXU2 420 aa15.73■□□□□ 0.11
SHMT2-229ENST00000557348 NECTIN2Q92692 538 aa15.73■□□□□ 0.11
SHMT2-229ENST00000557348 FMNL2Q96PY5 1086 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms