RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 SRCIN1Q9C0H9 1055 aa5.9□□□□□ -1.47
SYNE2-223ENST00000557005 HDAC5Q9UQL6 1122 aa5.9□□□□□ -1.47
SYNE2-223ENST00000557005 STX6O43752 255 aa5.9□□□□□ -1.47
SYNE2-223ENST00000557005 UVSSAQ2YD98 709 aa5.9□□□□□ -1.47
SYNE2-223ENST00000557005 ANO6Q4KMQ2 910 aa5.9□□□□□ -1.47
SYNE2-223ENST00000557005 SMAP1Q8IYB5 467 aaPredicted RBP5.9□□□□□ -1.47
SYNE2-223ENST00000557005 ZSCAN31Q96LW9 406 aaPredicted RBP5.9□□□□□ -1.47
SYNE2-223ENST00000557005 SRGAP3O43295 1099 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 GADD45BO75293 160 aaPredicted RBP5.89□□□□□ -1.47
SYNE2-223ENST00000557005 ZSCAN22P10073 491 aaPredicted RBP5.89□□□□□ -1.47
SYNE2-223ENST00000557005 PRIMPOLQ96LW4 560 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 USP26Q9BXU7 913 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 NOL7Q9UMY1 257 aaKnown RBP5.89□□□□□ -1.47
SYNE2-223ENST00000557005 NEXNQ0ZGT2 675 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 STK38Q15208 465 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 TSPYL6Q8N831 410 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 OTUD7AQ8TE49 926 aaPredicted RBP5.89□□□□□ -1.47
SYNE2-223ENST00000557005 HOOK1Q9UJC3 728 aaKnown RBP5.89□□□□□ -1.47
SYNE2-223ENST00000557005 NSD2O96028 1365 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 ATAD2Q6PL18 1390 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 HIP1O00291 1037 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 PTPN14Q15678 1187 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 TSR1Q2NL82 804 aaKnown RBP5.89□□□□□ -1.47
SYNE2-223ENST00000557005 PLEKHM2Q8IWE5 1019 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.89□□□□□ -1.47
SYNE2-223ENST00000557005 V9GYY5 206 aaPredicted RBP5.89□□□□□ -1.47
SYNE2-223ENST00000557005 ANKRD36BQ8N2N9 1353 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 PTGS1P23219 599 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 GUCY1B3Q02153 619 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 CCDC70Q6NSX1 233 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 GAS2L3Q86XJ1 694 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 C8orf58Q8NAV2 365 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 TSC1Q92574 1164 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 AK7Q96M32 723 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 ZBTB40Q9NUA8 1239 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 PPFIA3O75145 1194 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 RBM25P49756 843 aaKnown RBP5.89□□□□□ -1.47
SYNE2-223ENST00000557005 ANKRD1Q15327 319 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 DHX37Q8IY37 1157 aaKnown RBP5.89□□□□□ -1.47
SYNE2-223ENST00000557005 NECAB1Q8N987 351 aa5.89□□□□□ -1.47
SYNE2-223ENST00000557005 ADGRL1O94910 1474 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 MYL6BP14649 208 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 ERC1Q8IUD2 1116 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 CHAMP1Q96JM3 812 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 EID1Q9Y6B2 187 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 IL16Q14005 1332 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 ABCC10Q5T3U5 1492 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 FYB1O15117 783 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 DTNBO60941 627 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 GTF2F1P35269 517 aaKnown RBP eCLIP5.88□□□□□ -1.47
SYNE2-223ENST00000557005 TTC39AQ5SRH9 613 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 CCAR1Q8IX12 1150 aaKnown RBP5.88□□□□□ -1.47
SYNE2-223ENST00000557005 TTC5Q8N0Z6 440 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 CLASRPQ8N2M8 674 aaKnown RBP5.88□□□□□ -1.47
SYNE2-223ENST00000557005 USHBP1Q8N6Y0 703 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 GPT2Q8TD30 523 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 ESYT1Q9BSJ8 1104 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 SAMD9LQ8IVG5 1584 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 FSD2A1L4K1 749 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 DDX58O95786 925 aaKnown RBP5.88□□□□□ -1.47
SYNE2-223ENST00000557005 UBE2HP62256 183 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 U2AF2P26368 475 aaKnown RBP eCLIP5.88□□□□□ -1.47
SYNE2-223ENST00000557005 AKAP17AQ02040 695 aaKnown RBP5.88□□□□□ -1.47
SYNE2-223ENST00000557005 TMC6Q7Z403 805 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 LMBRD1Q9NUN5 540 aa5.88□□□□□ -1.47
SYNE2-223ENST00000557005 DNM1Q05193 864 aaKnown RBP5.87□□□□□ -1.47
SYNE2-223ENST00000557005 HDGFL1Q5TGJ6 251 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 MEIS3Q99687 375 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 PPP6R1Q9UPN7 881 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 LIMCH1Q9UPQ0 1083 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 NAP1L1P55209 391 aaKnown RBP5.87□□□□□ -1.47
SYNE2-223ENST00000557005 ISM2Q6H9L7 571 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 ANTXR1Q9H6X2 564 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 TFIP11Q9UBB9 837 aaKnown RBP5.87□□□□□ -1.47
SYNE2-223ENST00000557005 ERBB4Q15303 1308 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 RPGRIP1LQ68CZ1 1315 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 PKP1Q13835 747 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 HSP90B2PQ58FF3 399 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 BLOC1S2Q6QNY1 142 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 CCDC34Q96HJ3 373 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 RUFY1Q96T51 708 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 CHMP4AQ9BY43 222 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 GTPBP4Q9BZE4 634 aaKnown RBP5.87□□□□□ -1.47
SYNE2-223ENST00000557005 ACBD3Q9H3P7 528 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 DNAJC5BQ9UF47 199 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 PTPRCP08575 1304 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 INSRP06213 1382 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 ABCC1P33527 1531 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 CD2BP2O95400 341 aaKnown RBP5.87□□□□□ -1.47
SYNE2-223ENST00000557005 F13A1P00488 732 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 CDC42BPAQ5VT25 1732 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 CBFA2T2O43439 604 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 RAB11FIP3O75154 756 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 PDCP20941 246 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 CEP85Q6P2H3 762 aa5.87□□□□□ -1.47
SYNE2-223ENST00000557005 BTBD11A6QL63 1104 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 RIOK3O14730 519 aaKnown RBP5.86□□□□□ -1.47
SYNE2-223ENST00000557005 STX1AQ16623 288 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 GNAT3A8MTJ3 354 aa5.86□□□□□ -1.47
SYNE2-223ENST00000557005 TMCO3Q6UWJ1 677 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms