RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	RRS1	Q15050	365 aa	Known RBP	12.25	□□□□□ -0.45
SYNE2-222	ENST00000556725	C5	P01031	1676 aa		12.25	□□□□□ -0.45
SYNE2-222	ENST00000556725	TAF1L	Q8IZX4	1826 aa		12.25	□□□□□ -0.45
SYNE2-222	ENST00000556725	MPRIP	Q6WCQ1	1025 aa		12.24	□□□□□ -0.45
SYNE2-222	ENST00000556725	IGSF1	Q8N6C5	1336 aa		12.24	□□□□□ -0.45
SYNE2-222	ENST00000556725	PHF12	Q96QT6	1004 aa		12.24	□□□□□ -0.45
SYNE2-222	ENST00000556725	KIF3C	O14782	793 aa		12.23	□□□□□ -0.45
SYNE2-222	ENST00000556725	FLAD1	Q8NFF5	587 aa		12.23	□□□□□ -0.45
SYNE2-222	ENST00000556725	PALLD	Q8WX93	1383 aa		12.22	□□□□□ -0.45
SYNE2-222	ENST00000556725	PHF14	O94880	888 aa		12.22	□□□□□ -0.45
SYNE2-222	ENST00000556725	RAPGEF4	Q8WZA2	1011 aa		12.22	□□□□□ -0.45
SYNE2-222	ENST00000556725	PUS7	Q96PZ0	661 aa	Known RBP	12.22	□□□□□ -0.45
SYNE2-222	ENST00000556725	C4B	P0C0L5	1744 aa		12.21	□□□□□ -0.45
SYNE2-222	ENST00000556725	TOGARAM1	Q9Y4F4	1720 aa		12.21	□□□□□ -0.45
SYNE2-222	ENST00000556725	CYP27B1	O15528	508 aa		12.21	□□□□□ -0.45
SYNE2-222	ENST00000556725	TAT	P17735	454 aa	Predicted RBP	12.21	□□□□□ -0.45
SYNE2-222	ENST00000556725	AK7	Q96M32	723 aa		12.21	□□□□□ -0.45
SYNE2-222	ENST00000556725	CGNL1	Q0VF96	1302 aa		12.2	□□□□□ -0.46
SYNE2-222	ENST00000556725	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.2	□□□□□ -0.46
SYNE2-222	ENST00000556725	FYB1	O15117	783 aa		12.2	□□□□□ -0.46
SYNE2-222	ENST00000556725	HSP90AB2P	Q58FF8	381 aa		12.2	□□□□□ -0.46
SYNE2-222	ENST00000556725	TESK2	Q96S53	571 aa		12.2	□□□□□ -0.46
SYNE2-222	ENST00000556725	GGNBP2	Q9H3C7	697 aa		12.2	□□□□□ -0.46
SYNE2-222	ENST00000556725	UBR3	Q6ZT12	1888 aa		12.2	□□□□□ -0.46
SYNE2-222	ENST00000556725	ITGB4	P16144	1822 aa		12.2	□□□□□ -0.46
SYNE2-222	ENST00000556725	ST20-MTHFS	A0A0A6YYL1	179 aa		12.19	□□□□□ -0.46
SYNE2-222	ENST00000556725	DNAJC5G	Q8N7S2	189 aa		12.19	□□□□□ -0.46
SYNE2-222	ENST00000556725	PIGB	Q92521	554 aa		12.19	□□□□□ -0.46
SYNE2-222	ENST00000556725	PCDH11X	Q9BZA7	1347 aa		12.18	□□□□□ -0.46
SYNE2-222	ENST00000556725	PCDH11Y	Q9BZA8	1340 aa		12.18	□□□□□ -0.46
SYNE2-222	ENST00000556725	LINC00116	Q8NCU8	138 aa		12.18	□□□□□ -0.46
SYNE2-222	ENST00000556725	RTL1	A6NKG5	1358 aa		12.18	□□□□□ -0.46
SYNE2-222	ENST00000556725	SMARCC1	Q92922	1105 aa	Predicted RBP	12.17	□□□□□ -0.46
SYNE2-222	ENST00000556725	MAP2	P11137	1827 aa	Known RBP	12.16	□□□□□ -0.46
SYNE2-222	ENST00000556725	ITPK1	Q13572	414 aa		12.16	□□□□□ -0.46
SYNE2-222	ENST00000556725	ASTL	Q6HA08	431 aa	Predicted RBP	12.16	□□□□□ -0.46
SYNE2-222	ENST00000556725	LOC102724428	A0A0B4J2F2	783 aa		12.15	□□□□□ -0.46
SYNE2-222	ENST00000556725	HMGB2	P26583	209 aa	Known RBP	12.15	□□□□□ -0.46
SYNE2-222	ENST00000556725	SSFA2	P28290	1259 aa		12.15	□□□□□ -0.46
SYNE2-222	ENST00000556725	APLP1	P51693	650 aa		12.15	□□□□□ -0.46
SYNE2-222	ENST00000556725	SIK1	P57059	783 aa		12.15	□□□□□ -0.46
SYNE2-222	ENST00000556725	ASAP1	Q9ULH1	1129 aa		12.15	□□□□□ -0.46
SYNE2-222	ENST00000556725	INSR	P06213	1382 aa		12.15	□□□□□ -0.46
SYNE2-222	ENST00000556725	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.15	□□□□□ -0.46
SYNE2-222	ENST00000556725	SMG6	Q86US8	1419 aa	Known RBP	12.14	□□□□□ -0.47
SYNE2-222	ENST00000556725		A0A0G2JLW4	131 aa		12.14	□□□□□ -0.47
SYNE2-222	ENST00000556725	GNPAT	O15228	680 aa		12.14	□□□□□ -0.47
SYNE2-222	ENST00000556725	TOMM70	O94826	608 aa		12.14	□□□□□ -0.47
SYNE2-222	ENST00000556725	MMP10	P09238	476 aa		12.14	□□□□□ -0.47
SYNE2-222	ENST00000556725	POTEJ	P0CG39	1038 aa		12.14	□□□□□ -0.47
SYNE2-222	ENST00000556725	MNX1	P50219	401 aa	Predicted RBP	12.14	□□□□□ -0.47
SYNE2-222	ENST00000556725	NKX1-1	Q15270	411 aa	Predicted RBP	12.14	□□□□□ -0.47
SYNE2-222	ENST00000556725	NMRK2	Q9NPI5	230 aa		12.14	□□□□□ -0.47
SYNE2-222	ENST00000556725	METRN	Q9UJH8	293 aa		12.14	□□□□□ -0.47
SYNE2-222	ENST00000556725	HTRA3	P83110	453 aa		12.13	□□□□□ -0.47
SYNE2-222	ENST00000556725	BCS1L	Q9Y276	419 aa		12.13	□□□□□ -0.47
SYNE2-222	ENST00000556725	EMILIN1	Q9Y6C2	1016 aa		12.13	□□□□□ -0.47
SYNE2-222	ENST00000556725	PXDNL	A1KZ92	1463 aa		12.13	□□□□□ -0.47
SYNE2-222	ENST00000556725	CIC	Q96RK0	1608 aa	Predicted RBP	12.12	□□□□□ -0.47
SYNE2-222	ENST00000556725	KIAA1551	Q9HCM1	1747 aa		12.12	□□□□□ -0.47
SYNE2-222	ENST00000556725	C7	P10643	843 aa		12.12	□□□□□ -0.47
SYNE2-222	ENST00000556725	ATP6V1A	P38606	617 aa		12.12	□□□□□ -0.47
SYNE2-222	ENST00000556725	ARHGAP27	Q6ZUM4	889 aa		12.12	□□□□□ -0.47
SYNE2-222	ENST00000556725	SLC39A7	Q92504	469 aa		12.12	□□□□□ -0.47
SYNE2-222	ENST00000556725	FLT4	P35916	1363 aa		12.12	□□□□□ -0.47
SYNE2-222	ENST00000556725	NSD3	Q9BZ95	1437 aa		12.11	□□□□□ -0.47
SYNE2-222	ENST00000556725	PKD1L3	Q7Z443	1732 aa		12.11	□□□□□ -0.47
SYNE2-222	ENST00000556725	TGFB2	P61812	414 aa		12.11	□□□□□ -0.47
SYNE2-222	ENST00000556725	ATG3	Q9NT62	314 aa		12.11	□□□□□ -0.47
SYNE2-222	ENST00000556725	TMOD3	Q9NYL9	352 aa		12.11	□□□□□ -0.47
SYNE2-222	ENST00000556725	KIF13B	Q9NQT8	1826 aa		12.11	□□□□□ -0.47
SYNE2-222	ENST00000556725	PPM1G	O15355	546 aa	Predicted RBP	12.1	□□□□□ -0.47
SYNE2-222	ENST00000556725	ATMIN	O43313	823 aa	Predicted RBP	12.1	□□□□□ -0.47
SYNE2-222	ENST00000556725	DPEP1	P16444	411 aa		12.1	□□□□□ -0.47
SYNE2-222	ENST00000556725	LCE2D	Q5TA82	110 aa	Predicted RBP	12.1	□□□□□ -0.47
SYNE2-222	ENST00000556725	COL13A1	Q5TAT6	717 aa	Predicted RBP	12.1	□□□□□ -0.47
SYNE2-222	ENST00000556725	MAMSTR	Q6ZN01	415 aa		12.1	□□□□□ -0.47
SYNE2-222	ENST00000556725	SLC4A9	Q96Q91	983 aa		12.1	□□□□□ -0.47
SYNE2-222	ENST00000556725	SPG7	Q9UQ90	795 aa		12.1	□□□□□ -0.47
SYNE2-222	ENST00000556725	TONSL	Q96HA7	1378 aa		12.09	□□□□□ -0.47
SYNE2-222	ENST00000556725	FCHSD2	O94868	740 aa		12.09	□□□□□ -0.47
SYNE2-222	ENST00000556725	KCNA3	P22001	575 aa		12.09	□□□□□ -0.47
SYNE2-222	ENST00000556725	TMF1	P82094	1093 aa		12.09	□□□□□ -0.47
SYNE2-222	ENST00000556725	EYA1	Q99502	592 aa		12.09	□□□□□ -0.47
SYNE2-222	ENST00000556725	CARD14	Q9BXL6	1004 aa		12.09	□□□□□ -0.47
SYNE2-222	ENST00000556725	KIF24	Q5T7B8	1368 aa		12.08	□□□□□ -0.48
SYNE2-222	ENST00000556725	PHKG2	P15735	406 aa		12.08	□□□□□ -0.48
SYNE2-222	ENST00000556725	TRAPPC3L	Q5T215	181 aa		12.08	□□□□□ -0.48
SYNE2-222	ENST00000556725	C9orf131	Q5VYM1	1079 aa		12.08	□□□□□ -0.48
SYNE2-222	ENST00000556725	ARHGEF1	Q92888	912 aa	Known RBP	12.08	□□□□□ -0.48
SYNE2-222	ENST00000556725	RTCB	Q9Y3I0	505 aa	Known RBP	12.08	□□□□□ -0.48
SYNE2-222	ENST00000556725	KIF20B	Q96Q89	1820 aa		12.08	□□□□□ -0.48
SYNE2-222	ENST00000556725	NCAPD2	Q15021	1401 aa		12.08	□□□□□ -0.48
SYNE2-222	ENST00000556725	PCNT	O95613	3336 aa		12.08	□□□□□ -0.48
SYNE2-222	ENST00000556725	SLC24A1	O60721	1099 aa		12.07	□□□□□ -0.48
SYNE2-222	ENST00000556725	NLGN1	Q8N2Q7	840 aa		12.07	□□□□□ -0.48
SYNE2-222	ENST00000556725	RBM46	Q8TBY0	533 aa	Known RBP	12.07	□□□□□ -0.48
SYNE2-222	ENST00000556725	MS4A3	Q96HJ5	214 aa		12.07	□□□□□ -0.48
SYNE2-222	ENST00000556725	WDR90	Q96KV7	1748 aa		12.07	□□□□□ -0.48
SYNE2-222	ENST00000556725	C10orf71	Q711Q0	1435 aa		12.06	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms