RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 TOGARAM1Q9Y4F4 1720 aa17.5■□□□□ 0.39
SHMT2-223ENST00000556689 ERVV-2B6SEH9 535 aa17.49■□□□□ 0.39
SHMT2-223ENST00000556689 EIF4A2Q14240 407 aaKnown RBP17.49■□□□□ 0.39
SHMT2-223ENST00000556689 RBM42Q9BTD8 480 aaKnown RBP17.49■□□□□ 0.39
SHMT2-223ENST00000556689 BCS1LQ9Y276 419 aa17.49■□□□□ 0.39
SHMT2-223ENST00000556689 UBR3Q6ZT12 1888 aa17.49■□□□□ 0.39
SHMT2-223ENST00000556689 PKD1L3Q7Z443 1732 aa17.49■□□□□ 0.39
SHMT2-223ENST00000556689 KIF20BQ96Q89 1820 aa17.49■□□□□ 0.39
SHMT2-223ENST00000556689 A0A0G2JLW4 131 aa17.48■□□□□ 0.39
SHMT2-223ENST00000556689 RC3H1Q5TC82 1133 aaKnown RBP17.48■□□□□ 0.39
SHMT2-223ENST00000556689 ARHGEF1Q92888 912 aaKnown RBP17.48■□□□□ 0.39
SHMT2-223ENST00000556689 HSP90AB1P08238 724 aaKnown RBP17.47■□□□□ 0.39
SHMT2-223ENST00000556689 ADRA2BP18089 450 aa17.47■□□□□ 0.39
SHMT2-223ENST00000556689 TNNT2P45379 298 aaPredicted RBP17.47■□□□□ 0.39
SHMT2-223ENST00000556689 ARHGAP27Q6ZUM4 889 aa17.47■□□□□ 0.39
SHMT2-223ENST00000556689 MAP2P11137 1827 aaKnown RBP17.47■□□□□ 0.39
SHMT2-223ENST00000556689 RFC4P35249 363 aa17.46■□□□□ 0.39
SHMT2-223ENST00000556689 DCAF5Q96JK2 942 aa17.46■□□□□ 0.39
SHMT2-223ENST00000556689 SLC4A9Q96Q91 983 aa17.46■□□□□ 0.39
SHMT2-223ENST00000556689 CCDC87Q9NVE4 849 aa17.46■□□□□ 0.39
SHMT2-223ENST00000556689 RPS6KA4O75676 772 aa17.45■□□□□ 0.38
SHMT2-223ENST00000556689 APLP1P51693 650 aa17.45■□□□□ 0.38
SHMT2-223ENST00000556689 PLEKHO1Q53GL0 409 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-223ENST00000556689 POLR3GLQ9BT43 218 aa17.45■□□□□ 0.38
SHMT2-223ENST00000556689 PARP3Q9Y6F1 533 aa17.45■□□□□ 0.38
SHMT2-223ENST00000556689 PXDNLA1KZ92 1463 aa17.44■□□□□ 0.38
SHMT2-223ENST00000556689 TOMM70O94826 608 aa17.44■□□□□ 0.38
SHMT2-223ENST00000556689 FCHSD2O94868 740 aa17.44■□□□□ 0.38
SHMT2-223ENST00000556689 GYS1P13807 737 aa17.44■□□□□ 0.38
SHMT2-223ENST00000556689 DPEP1P16444 411 aa17.44■□□□□ 0.38
SHMT2-223ENST00000556689 CABP4P57796 275 aa17.44■□□□□ 0.38
SHMT2-223ENST00000556689 PLEKHG2Q9H7P9 1386 aa17.43■□□□□ 0.38
SHMT2-223ENST00000556689 CNTNAP4Q9C0A0 1308 aa17.43■□□□□ 0.38
SHMT2-223ENST00000556689 KDRP35968 1356 aa17.42■□□□□ 0.38
SHMT2-223ENST00000556689 AMOTQ4VCS5 1084 aa17.42■□□□□ 0.38
SHMT2-223ENST00000556689 TIMELESSQ9UNS1 1208 aa17.42■□□□□ 0.38
SHMT2-223ENST00000556689 MTHFSP49914 203 aa17.41■□□□□ 0.38
SHMT2-223ENST00000556689 ZNF530Q6P9A1 599 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-223ENST00000556689 PTCD1O75127 700 aaKnown RBP17.4■□□□□ 0.38
SHMT2-223ENST00000556689 KCNA3P22001 575 aa17.4■□□□□ 0.38
SHMT2-223ENST00000556689 C10orf71Q711Q0 1435 aa17.39■□□□□ 0.38
SHMT2-223ENST00000556689 DNAJC5GQ8N7S2 189 aa17.39■□□□□ 0.37
SHMT2-223ENST00000556689 NMRK2Q9NPI5 230 aa17.39■□□□□ 0.37
SHMT2-223ENST00000556689 PIM2Q9P1W9 311 aa17.39■□□□□ 0.37
SHMT2-223ENST00000556689 CICQ96RK0 1608 aaPredicted RBP17.39■□□□□ 0.37
SHMT2-223ENST00000556689 ANKRD26Q9UPS8 1709 aa17.38■□□□□ 0.37
SHMT2-223ENST00000556689 C1orf141Q5JVX7 400 aa17.38■□□□□ 0.37
SHMT2-223ENST00000556689 C9orf131Q5VYM1 1079 aa17.38■□□□□ 0.37
SHMT2-223ENST00000556689 NFATC2IPQ8NCF5 419 aa17.38■□□□□ 0.37
SHMT2-223ENST00000556689 CRKLP46109 303 aaKnown RBP17.37■□□□□ 0.37
SHMT2-223ENST00000556689 TRIM26Q12899 539 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-223ENST00000556689 C16orf71Q8IYS4 520 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-223ENST00000556689 PANK3Q9H999 370 aa17.37■□□□□ 0.37
SHMT2-223ENST00000556689 FKBP8Q14318 412 aa17.36■□□□□ 0.37
SHMT2-223ENST00000556689 DALRD3Q5D0E6 543 aaKnown RBP17.36■□□□□ 0.37
SHMT2-223ENST00000556689 RBM46Q8TBY0 533 aaKnown RBP17.36■□□□□ 0.37
SHMT2-223ENST00000556689 SRP68Q9UHB9 627 aaKnown RBP17.36■□□□□ 0.37
SHMT2-223ENST00000556689 KDM6AO15550 1401 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-223ENST00000556689 KIF13BQ9NQT8 1826 aa17.35■□□□□ 0.37
SHMT2-223ENST00000556689 N4BP2Q86UW6 1770 aaPredicted RBP17.34■□□□□ 0.37
SHMT2-223ENST00000556689 MORC1Q86VD1 984 aa17.34■□□□□ 0.37
SHMT2-223ENST00000556689 USP42Q9H9J4 1324 aaKnown RBP17.33■□□□□ 0.36
SHMT2-223ENST00000556689 SULT6B1Q6IMI4 303 aa17.33■□□□□ 0.36
SHMT2-223ENST00000556689 AEBP1Q8IUX7 1158 aa17.33■□□□□ 0.36
SHMT2-223ENST00000556689 ZNF831Q5JPB2 1677 aa17.32■□□□□ 0.36
SHMT2-223ENST00000556689 KDM2BQ8NHM5 1336 aa17.32■□□□□ 0.36
SHMT2-223ENST00000556689 TM4SF1P30408 202 aa17.32■□□□□ 0.36
SHMT2-223ENST00000556689 DDR1Q08345 913 aa17.32■□□□□ 0.36
SHMT2-223ENST00000556689 FSTL1Q12841 308 aa17.32■□□□□ 0.36
SHMT2-223ENST00000556689 INTS5Q6P9B9 1019 aaKnown RBP17.32■□□□□ 0.36
SHMT2-223ENST00000556689 RNF181Q9P0P0 153 aa17.32■□□□□ 0.36
SHMT2-223ENST00000556689 C4AP0C0L4 1744 aa17.32■□□□□ 0.36
SHMT2-223ENST00000556689 KIAA1551Q9HCM1 1747 aa17.31■□□□□ 0.36
SHMT2-223ENST00000556689 ZPR1O75312 459 aa17.31■□□□□ 0.36
SHMT2-223ENST00000556689 POLRMTO00411 1230 aaKnown RBP17.3■□□□□ 0.36
SHMT2-223ENST00000556689 CHRNA5P30532 468 aa17.3■□□□□ 0.36
SHMT2-223ENST00000556689 EIF4G2P78344 907 aaKnown RBP eCLIP17.3■□□□□ 0.36
SHMT2-223ENST00000556689 RRAGCQ9HB90 399 aa17.3■□□□□ 0.36
SHMT2-223ENST00000556689 AKAP4Q5JQC9 854 aa17.29■□□□□ 0.36
SHMT2-223ENST00000556689 USPL1Q5W0Q7 1092 aa17.29■□□□□ 0.36
SHMT2-223ENST00000556689 IL13P35225 146 aa17.28■□□□□ 0.36
SHMT2-223ENST00000556689 DNAJC10Q8IXB1 793 aa17.28■□□□□ 0.36
SHMT2-223ENST00000556689 KLRG1Q96E93 195 aa17.28■□□□□ 0.36
SHMT2-223ENST00000556689 MYH14Q7Z406 1995 aaKnown RBP17.28■□□□□ 0.36
SHMT2-223ENST00000556689 COL5A3P25940 1745 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-223ENST00000556689 HSPA5P11021 654 aaKnown RBP17.27■□□□□ 0.36
SHMT2-223ENST00000556689 HTRA3P83110 453 aa17.27■□□□□ 0.36
SHMT2-223ENST00000556689 SLC52A2Q9HAB3 445 aa17.27■□□□□ 0.36
SHMT2-223ENST00000556689 LGR6Q9HBX8 967 aa17.26■□□□□ 0.35
SHMT2-223ENST00000556689 KNSTRNQ9Y448 316 aa17.26■□□□□ 0.35
SHMT2-223ENST00000556689 CLSPNQ9HAW4 1339 aa17.25■□□□□ 0.35
SHMT2-223ENST00000556689 CYP19A1P11511 503 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-223ENST00000556689 JMYQ8N9B5 988 aa17.25■□□□□ 0.35
SHMT2-223ENST00000556689 KCPQ6ZWJ8 1503 aa17.25■□□□□ 0.35
SHMT2-223ENST00000556689 SOS1Q07889 1333 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-223ENST00000556689 SLC39A6Q13433 755 aa17.24■□□□□ 0.35
SHMT2-223ENST00000556689 NFIXQ14938 502 aa17.24■□□□□ 0.35
SHMT2-223ENST00000556689 SMC1BQ8NDV3 1235 aa17.24■□□□□ 0.35
SHMT2-223ENST00000556689 NARFQ9UHQ1 456 aa17.24■□□□□ 0.35
SHMT2-223ENST00000556689 RNMTO43148 476 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms