RNA–Protein interactions for RNA: ENST00000556571.1

ACTN1-221, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 568 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-221ENST00000556571 TRAPPC3LQ5T215 181 aa16.46■□□□□ 0.23
ACTN1-221ENST00000556571 NLGN1Q8N2Q7 840 aa16.46■□□□□ 0.23
ACTN1-221ENST00000556571 POLKQ9UBT6 870 aa16.46■□□□□ 0.23
ACTN1-221ENST00000556571 RTCBQ9Y3I0 505 aaKnown RBP16.45■□□□□ 0.22
ACTN1-221ENST00000556571 MAP2P11137 1827 aaKnown RBP16.45■□□□□ 0.22
ACTN1-221ENST00000556571 PLEKHG2Q9H7P9 1386 aa16.43■□□□□ 0.22
ACTN1-221ENST00000556571 ERVV-2B6SEH9 535 aa16.43■□□□□ 0.22
ACTN1-221ENST00000556571 ADRA2BP18089 450 aa16.43■□□□□ 0.22
ACTN1-221ENST00000556571 RC3H1Q5TC82 1133 aaKnown RBP16.43■□□□□ 0.22
ACTN1-221ENST00000556571 EIF4A2Q14240 407 aaKnown RBP16.42■□□□□ 0.22
ACTN1-221ENST00000556571 BCS1LQ9Y276 419 aa16.42■□□□□ 0.22
ACTN1-221ENST00000556571 PXDNLA1KZ92 1463 aa16.42■□□□□ 0.22
ACTN1-221ENST00000556571 A0A0G2JLW4 131 aa16.41■□□□□ 0.22
ACTN1-221ENST00000556571 HSP90AB1P08238 724 aaKnown RBP16.41■□□□□ 0.22
ACTN1-221ENST00000556571 APLP1P51693 650 aa16.41■□□□□ 0.22
ACTN1-221ENST00000556571 ARHGEF1Q92888 912 aaKnown RBP16.41■□□□□ 0.22
ACTN1-221ENST00000556571 DCAF5Q96JK2 942 aa16.41■□□□□ 0.22
ACTN1-221ENST00000556571 RBM42Q9BTD8 480 aaKnown RBP16.41■□□□□ 0.22
ACTN1-221ENST00000556571 CCDC87Q9NVE4 849 aa16.41■□□□□ 0.22
ACTN1-221ENST00000556571 KDRP35968 1356 aa16.4■□□□□ 0.22
ACTN1-221ENST00000556571 TOMM70O94826 608 aa16.4■□□□□ 0.22
ACTN1-221ENST00000556571 RFC4P35249 363 aa16.4■□□□□ 0.22
ACTN1-221ENST00000556571 ARHGAP27Q6ZUM4 889 aa16.4■□□□□ 0.22
ACTN1-221ENST00000556571 SLC4A9Q96Q91 983 aa16.4■□□□□ 0.22
ACTN1-221ENST00000556571 CICQ96RK0 1608 aaPredicted RBP16.39■□□□□ 0.21
ACTN1-221ENST00000556571 RPS6KA4O75676 772 aa16.39■□□□□ 0.21
ACTN1-221ENST00000556571 GYS1P13807 737 aa16.39■□□□□ 0.21
ACTN1-221ENST00000556571 PLEKHO1Q53GL0 409 aaPredicted RBP16.39■□□□□ 0.21
ACTN1-221ENST00000556571 CNTNAP4Q9C0A0 1308 aa16.39■□□□□ 0.21
ACTN1-221ENST00000556571 ANKRD26Q9UPS8 1709 aa16.39■□□□□ 0.21
ACTN1-221ENST00000556571 C10orf71Q711Q0 1435 aa16.38■□□□□ 0.21
ACTN1-221ENST00000556571 FCHSD2O94868 740 aa16.38■□□□□ 0.21
ACTN1-221ENST00000556571 DPEP1P16444 411 aa16.38■□□□□ 0.21
ACTN1-221ENST00000556571 TNNT2P45379 298 aaPredicted RBP16.38■□□□□ 0.21
ACTN1-221ENST00000556571 PARP3Q9Y6F1 533 aa16.38■□□□□ 0.21
ACTN1-221ENST00000556571 CABP4P57796 275 aa16.37■□□□□ 0.21
ACTN1-221ENST00000556571 AMOTQ4VCS5 1084 aa16.37■□□□□ 0.21
ACTN1-221ENST00000556571 TIMELESSQ9UNS1 1208 aa16.37■□□□□ 0.21
ACTN1-221ENST00000556571 ZNF530Q6P9A1 599 aaPredicted RBP16.35■□□□□ 0.21
ACTN1-221ENST00000556571 KIF13BQ9NQT8 1826 aa16.35■□□□□ 0.21
ACTN1-221ENST00000556571 KCNA3P22001 575 aa16.34■□□□□ 0.21
ACTN1-221ENST00000556571 MTHFSP49914 203 aa16.34■□□□□ 0.21
ACTN1-221ENST00000556571 DNAJC5GQ8N7S2 189 aa16.34■□□□□ 0.21
ACTN1-221ENST00000556571 POLR3GLQ9BT43 218 aa16.34■□□□□ 0.21
ACTN1-221ENST00000556571 NMRK2Q9NPI5 230 aa16.34■□□□□ 0.21
ACTN1-221ENST00000556571 PIM2Q9P1W9 311 aa16.34■□□□□ 0.21
ACTN1-221ENST00000556571 PTCD1O75127 700 aaKnown RBP16.33■□□□□ 0.2
ACTN1-221ENST00000556571 C9orf131Q5VYM1 1079 aa16.33■□□□□ 0.2
ACTN1-221ENST00000556571 CRKLP46109 303 aaKnown RBP16.32■□□□□ 0.2
ACTN1-221ENST00000556571 DALRD3Q5D0E6 543 aaKnown RBP16.32■□□□□ 0.2
ACTN1-221ENST00000556571 ZNF831Q5JPB2 1677 aa16.32■□□□□ 0.2
ACTN1-221ENST00000556571 C1orf141Q5JVX7 400 aa16.32■□□□□ 0.2
ACTN1-221ENST00000556571 RBM46Q8TBY0 533 aaKnown RBP16.32■□□□□ 0.2
ACTN1-221ENST00000556571 N4BP2Q86UW6 1770 aaPredicted RBP16.31■□□□□ 0.2
ACTN1-221ENST00000556571 KIAA1551Q9HCM1 1747 aa16.31■□□□□ 0.2
ACTN1-221ENST00000556571 KDM6AO15550 1401 aaPredicted RBP16.31■□□□□ 0.2
ACTN1-221ENST00000556571 C16orf71Q8IYS4 520 aaPredicted RBP16.31■□□□□ 0.2
ACTN1-221ENST00000556571 NFATC2IPQ8NCF5 419 aa16.31■□□□□ 0.2
ACTN1-221ENST00000556571 C4AP0C0L4 1744 aa16.31■□□□□ 0.2
ACTN1-221ENST00000556571 FKBP8Q14318 412 aa16.3■□□□□ 0.2
ACTN1-221ENST00000556571 KDM2BQ8NHM5 1336 aa16.29■□□□□ 0.2
ACTN1-221ENST00000556571 USP42Q9H9J4 1324 aaKnown RBP16.29■□□□□ 0.2
ACTN1-221ENST00000556571 TRIM26Q12899 539 aaPredicted RBP16.29■□□□□ 0.2
ACTN1-221ENST00000556571 PANK3Q9H999 370 aa16.29■□□□□ 0.2
ACTN1-221ENST00000556571 SRP68Q9UHB9 627 aaKnown RBP16.29■□□□□ 0.2
ACTN1-221ENST00000556571 DDR1Q08345 913 aa16.28■□□□□ 0.2
ACTN1-221ENST00000556571 FSTL1Q12841 308 aa16.28■□□□□ 0.2
ACTN1-221ENST00000556571 AEBP1Q8IUX7 1158 aa16.28■□□□□ 0.2
ACTN1-221ENST00000556571 MORC1Q86VD1 984 aa16.27■□□□□ 0.2
ACTN1-221ENST00000556571 RNF181Q9P0P0 153 aa16.27■□□□□ 0.2
ACTN1-221ENST00000556571 MYH14Q7Z406 1995 aaKnown RBP16.27■□□□□ 0.19
ACTN1-221ENST00000556571 COL5A3P25940 1745 aaPredicted RBP16.27■□□□□ 0.19
ACTN1-221ENST00000556571 ZPR1O75312 459 aa16.26■□□□□ 0.19
ACTN1-221ENST00000556571 TM4SF1P30408 202 aa16.26■□□□□ 0.19
ACTN1-221ENST00000556571 SULT6B1Q6IMI4 303 aa16.26■□□□□ 0.19
ACTN1-221ENST00000556571 INTS5Q6P9B9 1019 aaKnown RBP16.26■□□□□ 0.19
ACTN1-221ENST00000556571 POLRMTO00411 1230 aaKnown RBP16.25■□□□□ 0.19
ACTN1-221ENST00000556571 CHRNA5P30532 468 aa16.25■□□□□ 0.19
ACTN1-221ENST00000556571 KLRG1Q96E93 195 aa16.25■□□□□ 0.19
ACTN1-221ENST00000556571 EIF4G2P78344 907 aaKnown RBP eCLIP16.24■□□□□ 0.19
ACTN1-221ENST00000556571 RRAGCQ9HB90 399 aa16.24■□□□□ 0.19
ACTN1-221ENST00000556571 BRCA1P38398 1863 aaKnown RBP16.24■□□□□ 0.19
ACTN1-221ENST00000556571 IL13P35225 146 aa16.23■□□□□ 0.19
ACTN1-221ENST00000556571 AKAP4Q5JQC9 854 aa16.23■□□□□ 0.19
ACTN1-221ENST00000556571 USPL1Q5W0Q7 1092 aa16.23■□□□□ 0.19
ACTN1-221ENST00000556571 DNAJC10Q8IXB1 793 aa16.23■□□□□ 0.19
ACTN1-221ENST00000556571 ARFGEF1Q9Y6D6 1849 aa16.22■□□□□ 0.19
ACTN1-221ENST00000556571 HTRA3P83110 453 aa16.22■□□□□ 0.19
ACTN1-221ENST00000556571 JMYQ8N9B5 988 aa16.22■□□□□ 0.19
ACTN1-221ENST00000556571 SLC52A2Q9HAB3 445 aa16.22■□□□□ 0.19
ACTN1-221ENST00000556571 KCPQ6ZWJ8 1503 aa16.22■□□□□ 0.19
ACTN1-221ENST00000556571 CLSPNQ9HAW4 1339 aa16.21■□□□□ 0.19
ACTN1-221ENST00000556571 ZC3H4Q9UPT8 1303 aaKnown RBP16.21■□□□□ 0.19
ACTN1-221ENST00000556571 HSPA5P11021 654 aaKnown RBP16.21■□□□□ 0.19
ACTN1-221ENST00000556571 SMC1BQ8NDV3 1235 aa16.21■□□□□ 0.19
ACTN1-221ENST00000556571 NARFQ9UHQ1 456 aa16.21■□□□□ 0.19
ACTN1-221ENST00000556571 SOS1Q07889 1333 aaPredicted RBP16.2■□□□□ 0.18
ACTN1-221ENST00000556571 CYP19A1P11511 503 aaPredicted RBP16.2■□□□□ 0.18
ACTN1-221ENST00000556571 KNSTRNQ9Y448 316 aa16.2■□□□□ 0.18
ACTN1-221ENST00000556571 NFIXQ14938 502 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms