RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 GDF10P55107 478 aa8.53□□□□□ -1.04
SRP54-211ENST00000556445 PLEKHM2Q8IWE5 1019 aa8.53□□□□□ -1.04
SRP54-211ENST00000556445 GPR161Q8N6U8 529 aaKnown RBP8.53□□□□□ -1.04
SRP54-211ENST00000556445 CUEDC1Q9NWM3 386 aaPredicted RBP8.53□□□□□ -1.04
SRP54-211ENST00000556445 TMEM229AB2RXF0 380 aa8.52□□□□□ -1.05
SRP54-211ENST00000556445 ATP9BO43861 1147 aa8.52□□□□□ -1.05
SRP54-211ENST00000556445 WDR44Q5JSH3 913 aa8.52□□□□□ -1.05
SRP54-211ENST00000556445 NOD1Q9Y239 953 aa8.52□□□□□ -1.05
SRP54-211ENST00000556445 USP17L3A6NCW0 530 aa8.51□□□□□ -1.05
SRP54-211ENST00000556445 USP17L4A6NCW7 530 aa8.51□□□□□ -1.05
SRP54-211ENST00000556445 GTF2IP78347 998 aa8.51□□□□□ -1.05
SRP54-211ENST00000556445 USP17L2Q6R6M4 530 aa8.51□□□□□ -1.05
SRP54-211ENST00000556445 USP17L1Q7RTZ2 530 aa8.51□□□□□ -1.05
SRP54-211ENST00000556445 ZSCAN10Q96SZ4 725 aaPredicted RBP8.51□□□□□ -1.05
SRP54-211ENST00000556445 TLR1Q15399 786 aa8.5□□□□□ -1.05
SRP54-211ENST00000556445 TAS1R3Q7RTX0 852 aa8.5□□□□□ -1.05
SRP54-211ENST00000556445 VWA5B2Q8N398 1253 aa8.5□□□□□ -1.05
SRP54-211ENST00000556445 DYRK1BQ9Y463 629 aa8.5□□□□□ -1.05
SRP54-211ENST00000556445 SUPT5HO00267 1087 aaKnown RBP8.49□□□□□ -1.05
SRP54-211ENST00000556445 LORP23490 312 aaPredicted RBP8.49□□□□□ -1.05
SRP54-211ENST00000556445 PPARGC1BQ86YN6 1023 aaKnown RBP8.49□□□□□ -1.05
SRP54-211ENST00000556445 SLC4A9Q96Q91 983 aa8.49□□□□□ -1.05
SRP54-211ENST00000556445 SMTNP53814 917 aa8.48□□□□□ -1.05
SRP54-211ENST00000556445 KRT76Q01546 638 aa8.48□□□□□ -1.05
SRP54-211ENST00000556445 C4orf17Q53FE4 359 aa8.48□□□□□ -1.05
SRP54-211ENST00000556445 NPM2Q86SE8 214 aaKnown RBP8.48□□□□□ -1.05
SRP54-211ENST00000556445 CALR3Q96L12 384 aaKnown RBP8.48□□□□□ -1.05
SRP54-211ENST00000556445 TIMMDC1Q9NPL8 285 aa8.48□□□□□ -1.05
SRP54-211ENST00000556445 TFIP11Q9UBB9 837 aaKnown RBP8.48□□□□□ -1.05
SRP54-211ENST00000556445 MAFBQ9Y5Q3 323 aaPredicted RBP8.48□□□□□ -1.05
SRP54-211ENST00000556445 CDC14CA4D256 554 aa8.47□□□□□ -1.05
SRP54-211ENST00000556445 ZBTB7BO15156 539 aaPredicted RBP8.47□□□□□ -1.05
SRP54-211ENST00000556445 CLDN10P78369 228 aa8.47□□□□□ -1.05
SRP54-211ENST00000556445 INSM1Q01101 510 aaPredicted RBP8.47□□□□□ -1.05
SRP54-211ENST00000556445 GNASQ5JWF2 1037 aa8.47□□□□□ -1.05
SRP54-211ENST00000556445 TMEM214Q6NUQ4 689 aaKnown RBP8.47□□□□□ -1.05
SRP54-211ENST00000556445 SV2AQ7L0J3 742 aa8.47□□□□□ -1.05
SRP54-211ENST00000556445 TRIM50Q86XT4 487 aa8.47□□□□□ -1.05
SRP54-211ENST00000556445 TRIM22Q8IYM9 498 aa8.47□□□□□ -1.05
SRP54-211ENST00000556445 ZNF295-AS1Q8N0V1 137 aa8.47□□□□□ -1.05
SRP54-211ENST00000556445 ZNF837Q96EG3 531 aaPredicted RBP8.47□□□□□ -1.05
SRP54-211ENST00000556445 SERTAD1Q9UHV2 236 aa8.47□□□□□ -1.05
SRP54-211ENST00000556445 KIAA1024Q9UPX6 916 aa8.47□□□□□ -1.05
SRP54-211ENST00000556445 PALM3A6NDB9 673 aaPredicted RBP8.46□□□□□ -1.06
SRP54-211ENST00000556445 PHKA2P46019 1235 aa8.46□□□□□ -1.06
SRP54-211ENST00000556445 MTFR1Q15390 333 aa8.46□□□□□ -1.06
SRP54-211ENST00000556445 DBN1Q16643 649 aa8.46□□□□□ -1.06
SRP54-211ENST00000556445 RHBDD1Q8TEB9 315 aa8.46□□□□□ -1.06
SRP54-211ENST00000556445 PPP1R12CQ9BZL4 782 aa8.46□□□□□ -1.06
SRP54-211ENST00000556445 ZNF358Q9NW07 568 aa8.46□□□□□ -1.06
SRP54-211ENST00000556445 ZNF777Q9ULD5 760 aaPredicted RBP8.46□□□□□ -1.06
SRP54-211ENST00000556445 IQSEC3Q9UPP2 1182 aaPredicted RBP8.46□□□□□ -1.06
SRP54-211ENST00000556445 SCRIBQ14160 1630 aa8.46□□□□□ -1.06
SRP54-211ENST00000556445 PSME1Q06323 249 aa8.45□□□□□ -1.06
SRP54-211ENST00000556445 RNFT1Q5M7Z0 435 aa8.45□□□□□ -1.06
SRP54-211ENST00000556445 RIPOR1Q6ZS17 1223 aa8.45□□□□□ -1.06
SRP54-211ENST00000556445 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.45□□□□□ -1.06
SRP54-211ENST00000556445 GAS2L1Q99501 681 aaPredicted RBP8.45□□□□□ -1.06
SRP54-211ENST00000556445 COL25A1Q9BXS0 654 aaPredicted RBP8.45□□□□□ -1.06
SRP54-211ENST00000556445 MKRN1Q9UHC7 482 aaKnown RBP8.45□□□□□ -1.06
SRP54-211ENST00000556445 USP3Q9Y6I4 520 aa8.45□□□□□ -1.06
SRP54-211ENST00000556445 A6NJY4 79 aa8.44□□□□□ -1.06
SRP54-211ENST00000556445 F11P03951 625 aa8.44□□□□□ -1.06
SRP54-211ENST00000556445 THBS1P07996 1170 aa8.44□□□□□ -1.06
SRP54-211ENST00000556445 GTF2E1P29083 439 aaPredicted RBP8.44□□□□□ -1.06
SRP54-211ENST00000556445 GMCL1Q96IK5 515 aa8.44□□□□□ -1.06
SRP54-211ENST00000556445 A0A1B0GTH6 734 aa8.43□□□□□ -1.06
SRP54-211ENST00000556445 CDK2AP1O14519 115 aa8.43□□□□□ -1.06
SRP54-211ENST00000556445 DKK1O94907 266 aa8.43□□□□□ -1.06
SRP54-211ENST00000556445 ATP1A2P50993 1020 aa8.43□□□□□ -1.06
SRP54-211ENST00000556445 EPHA4P54764 986 aa8.43□□□□□ -1.06
SRP54-211ENST00000556445 TRIM26Q12899 539 aaPredicted RBP8.43□□□□□ -1.06
SRP54-211ENST00000556445 OGFOD1Q8N543 542 aa8.43□□□□□ -1.06
SRP54-211ENST00000556445 TPCN2Q8NHX9 752 aa8.43□□□□□ -1.06
SRP54-211ENST00000556445 DNAAF2Q9NVR5 837 aaKnown RBP8.43□□□□□ -1.06
SRP54-211ENST00000556445 BACH1O14867 736 aa8.42□□□□□ -1.06
SRP54-211ENST00000556445 MSX1P28360 303 aa8.42□□□□□ -1.06
SRP54-211ENST00000556445 GAS6Q14393 721 aa8.42□□□□□ -1.06
SRP54-211ENST00000556445 LARGE2Q8N3Y3 721 aa8.42□□□□□ -1.06
SRP54-211ENST00000556445 CNTNAP3BQ96NU0 1288 aa8.42□□□□□ -1.06
SRP54-211ENST00000556445 CNTNAP3Q9BZ76 1288 aa8.42□□□□□ -1.06
SRP54-211ENST00000556445 ZMYND15Q9H091 742 aa8.42□□□□□ -1.06
SRP54-211ENST00000556445 SCHIP1Q9P0W5 487 aaPredicted RBP8.42□□□□□ -1.06
SRP54-211ENST00000556445 H7C1W4 665 aa8.41□□□□□ -1.06
SRP54-211ENST00000556445 PLA2G4AP47712 749 aa8.41□□□□□ -1.06
SRP54-211ENST00000556445 FOXK2Q01167 660 aa8.41□□□□□ -1.06
SRP54-211ENST00000556445 KANK4Q5T7N3 995 aaPredicted RBP8.41□□□□□ -1.06
SRP54-211ENST00000556445 CCDC102BQ68D86 513 aa8.41□□□□□ -1.06
SRP54-211ENST00000556445 SIX5Q8N196 739 aa8.41□□□□□ -1.06
SRP54-211ENST00000556445 ZSCAN1Q8NBB4 408 aa8.41□□□□□ -1.06
SRP54-211ENST00000556445 NIFKQ9BYG3 293 aaKnown RBP8.41□□□□□ -1.06
SRP54-211ENST00000556445 GPAMQ9HCL2 828 aa8.41□□□□□ -1.06
SRP54-211ENST00000556445 CFAP70Q5T0N1 1121 aa8.4□□□□□ -1.06
SRP54-211ENST00000556445 GTPBP3Q969Y2 492 aaKnown RBP8.4□□□□□ -1.06
SRP54-211ENST00000556445 NUCKS1Q9H1E3 243 aaKnown RBP8.4□□□□□ -1.06
SRP54-211ENST00000556445 STK17AQ9UEE5 414 aa8.4□□□□□ -1.06
SRP54-211ENST00000556445 GPR25O00155 361 aa8.39□□□□□ -1.07
SRP54-211ENST00000556445 ATP4AP20648 1035 aa8.39□□□□□ -1.07
SRP54-211ENST00000556445 UBAP2LQ14157 1087 aaKnown RBP8.39□□□□□ -1.07
SRP54-211ENST00000556445 TNS4Q8IZW8 715 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms