RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 MORC1Q86VD1 984 aa8.76□□□□□ -1.01
TMEM260-209ENST00000556079 MIER1Q8N108 512 aa8.76□□□□□ -1.01
TMEM260-209ENST00000556079 SGIP1Q9BQI5 828 aa8.76□□□□□ -1.01
TMEM260-209ENST00000556079 MTFR1LQ9H019 292 aa8.76□□□□□ -1.01
TMEM260-209ENST00000556079 LRRC4BQ9NT99 713 aa8.76□□□□□ -1.01
TMEM260-209ENST00000556079 LY75O60449 1722 aa8.76□□□□□ -1.01
TMEM260-209ENST00000556079 PER1O15534 1290 aaPredicted RBP8.75□□□□□ -1.01
TMEM260-209ENST00000556079 GABBR2O75899 941 aa8.75□□□□□ -1.01
TMEM260-209ENST00000556079 TATP17735 454 aaPredicted RBP8.75□□□□□ -1.01
TMEM260-209ENST00000556079 SMIM5Q71RC9 77 aa8.75□□□□□ -1.01
TMEM260-209ENST00000556079 RAPGEF4Q8WZA2 1011 aa8.75□□□□□ -1.01
TMEM260-209ENST00000556079 ARXQ96QS3 562 aa8.74□□□□□ -1.01
TMEM260-209ENST00000556079 KNSTRNQ9Y448 316 aa8.74□□□□□ -1.01
TMEM260-209ENST00000556079 KIF24Q5T7B8 1368 aa8.73□□□□□ -1.01
TMEM260-209ENST00000556079 COL3A1P02461 1466 aaPredicted RBP8.73□□□□□ -1.01
TMEM260-209ENST00000556079 SENP3-EIF4A1A0A087X0R7 540 aa8.73□□□□□ -1.01
TMEM260-209ENST00000556079 MNX1P50219 401 aaPredicted RBP8.73□□□□□ -1.01
TMEM260-209ENST00000556079 IGSF1Q8N6C5 1336 aa8.73□□□□□ -1.01
TMEM260-209ENST00000556079 VIRMAQ69YN4 1812 aaKnown RBP8.73□□□□□ -1.01
TMEM260-209ENST00000556079 TAF1LQ8IZX4 1826 aa8.73□□□□□ -1.01
TMEM260-209ENST00000556079 KLHL34Q8N239 644 aa8.72□□□□□ -1.01
TMEM260-209ENST00000556079 PCDH11XQ9BZA7 1347 aa8.72□□□□□ -1.01
TMEM260-209ENST00000556079 PCDH11YQ9BZA8 1340 aa8.72□□□□□ -1.01
TMEM260-209ENST00000556079 C5P01031 1676 aa8.72□□□□□ -1.01
TMEM260-209ENST00000556079 IL13P35225 146 aa8.71□□□□□ -1.02
TMEM260-209ENST00000556079 MTHFSP49914 203 aa8.71□□□□□ -1.02
TMEM260-209ENST00000556079 C1QTNF8P60827 252 aa8.71□□□□□ -1.02
TMEM260-209ENST00000556079 MPRIPQ6WCQ1 1025 aa8.71□□□□□ -1.02
TMEM260-209ENST00000556079 AMIGO3Q86WK7 504 aa8.71□□□□□ -1.02
TMEM260-209ENST00000556079 PLCD3Q8N3E9 789 aa8.71□□□□□ -1.02
TMEM260-209ENST00000556079 KDM6AO15550 1401 aaPredicted RBP8.71□□□□□ -1.02
TMEM260-209ENST00000556079 HMOX1P09601 288 aa8.7□□□□□ -1.02
TMEM260-209ENST00000556079 GPR162Q16538 588 aa8.7□□□□□ -1.02
TMEM260-209ENST00000556079 PELP1Q8IZL8 1130 aaKnown RBP8.7□□□□□ -1.02
TMEM260-209ENST00000556079 PIGBQ92521 554 aa8.7□□□□□ -1.02
TMEM260-209ENST00000556079 PHKG2P15735 406 aa8.69□□□□□ -1.02
TMEM260-209ENST00000556079 SULT6B1Q6IMI4 303 aa8.69□□□□□ -1.02
TMEM260-209ENST00000556079 NLGN2Q8NFZ4 835 aa8.69□□□□□ -1.02
TMEM260-209ENST00000556079 PALLDQ8WX93 1383 aa8.69□□□□□ -1.02
TMEM260-209ENST00000556079 QSER1Q2KHR3 1735 aa8.68□□□□□ -1.02
TMEM260-209ENST00000556079 CHD4Q14839 1912 aa8.68□□□□□ -1.02
TMEM260-209ENST00000556079 ZNF530Q6P9A1 599 aaPredicted RBP8.68□□□□□ -1.02
TMEM260-209ENST00000556079 CCNL1Q9UK58 526 aaPredicted RBP8.68□□□□□ -1.02
TMEM260-209ENST00000556079 ASAP1Q9ULH1 1129 aa8.68□□□□□ -1.02
TMEM260-209ENST00000556079 PNPLA7Q6ZV29 1317 aa8.68□□□□□ -1.02
TMEM260-209ENST00000556079 MAP3K5Q99683 1374 aa8.68□□□□□ -1.02
TMEM260-209ENST00000556079 C4BP0C0L5 1744 aa8.68□□□□□ -1.02
TMEM260-209ENST00000556079 SCN11AQ9UI33 1791 aa8.68□□□□□ -1.02
TMEM260-209ENST00000556079 MSL1Q68DK7 614 aa8.67□□□□□ -1.02
TMEM260-209ENST00000556079 UBR3Q6ZT12 1888 aa8.67□□□□□ -1.02
TMEM260-209ENST00000556079 TFCP2L1Q9NZI6 479 aa8.67□□□□□ -1.02
TMEM260-209ENST00000556079 SPG7Q9UQ90 795 aa8.67□□□□□ -1.02
TMEM260-209ENST00000556079 KDRP35968 1356 aa8.66□□□□□ -1.02
TMEM260-209ENST00000556079 POLD1P28340 1107 aa8.66□□□□□ -1.02
TMEM260-209ENST00000556079 ITPK1Q13572 414 aa8.66□□□□□ -1.02
TMEM260-209ENST00000556079 NKX1-1Q15270 411 aaPredicted RBP8.66□□□□□ -1.02
TMEM260-209ENST00000556079 LINC00116Q8NCU8 138 aa8.66□□□□□ -1.02
TMEM260-209ENST00000556079 SLC4A9Q96Q91 983 aa8.66□□□□□ -1.02
TMEM260-209ENST00000556079 ATG3Q9NT62 314 aa8.66□□□□□ -1.02
TMEM260-209ENST00000556079 MYH14Q7Z406 1995 aaKnown RBP8.66□□□□□ -1.02
TMEM260-209ENST00000556079 TJP1Q07157 1748 aa8.66□□□□□ -1.02
TMEM260-209ENST00000556079 GIGYF1O75420 1035 aaPredicted RBP8.65□□□□□ -1.02
TMEM260-209ENST00000556079 YBX3P16989 372 aaKnown RBP eCLIP8.65□□□□□ -1.02
TMEM260-209ENST00000556079 SLC27A3Q5K4L6 730 aa8.65□□□□□ -1.02
TMEM260-209ENST00000556079 COL23A1Q86Y22 540 aaPredicted RBP8.65□□□□□ -1.02
TMEM260-209ENST00000556079 IFNL2Q8IZJ0 200 aa8.65□□□□□ -1.02
TMEM260-209ENST00000556079 ZNF579Q8NAF0 562 aaKnown RBP8.65□□□□□ -1.02
TMEM260-209ENST00000556079 SLC16A10Q8TF71 515 aa8.65□□□□□ -1.02
TMEM260-209ENST00000556079 TSPYL2Q9H2G4 693 aaPredicted RBP8.65□□□□□ -1.02
TMEM260-209ENST00000556079 LGR6Q9HBX8 967 aa8.65□□□□□ -1.02
TMEM260-209ENST00000556079 COL5A3P25940 1745 aaPredicted RBP8.65□□□□□ -1.03
TMEM260-209ENST00000556079 COL24A1Q17RW2 1714 aa8.65□□□□□ -1.03
TMEM260-209ENST00000556079 NPC1L1Q9UHC9 1359 aa8.64□□□□□ -1.03
TMEM260-209ENST00000556079 U2SURPO15042 1029 aaKnown RBP8.64□□□□□ -1.03
TMEM260-209ENST00000556079 DIAPH1O60610 1272 aaKnown RBP8.64□□□□□ -1.03
TMEM260-209ENST00000556079 PHF14O94880 888 aa8.64□□□□□ -1.03
TMEM260-209ENST00000556079 PPP2R1AP30153 589 aa8.64□□□□□ -1.03
TMEM260-209ENST00000556079 PLEKHO1Q53GL0 409 aaPredicted RBP8.64□□□□□ -1.03
TMEM260-209ENST00000556079 PHF12Q96QT6 1004 aa8.64□□□□□ -1.03
TMEM260-209ENST00000556079 TMOD3Q9NYL9 352 aa8.64□□□□□ -1.03
TMEM260-209ENST00000556079 MTHFSDQ2M296 383 aaKnown RBP8.63□□□□□ -1.03
TMEM260-209ENST00000556079 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.63□□□□□ -1.03
TMEM260-209ENST00000556079 ADAMTS7Q9UKP4 1686 aa8.62□□□□□ -1.03
TMEM260-209ENST00000556079 LOC102724428A0A0B4J2F2 783 aa8.62□□□□□ -1.03
TMEM260-209ENST00000556079 SIK1P57059 783 aa8.62□□□□□ -1.03
TMEM260-209ENST00000556079 DDX10Q13206 875 aaKnown RBP8.62□□□□□ -1.03
TMEM260-209ENST00000556079 SLC39A6Q13433 755 aa8.62□□□□□ -1.03
TMEM260-209ENST00000556079 PHACTR3Q96KR7 559 aa8.62□□□□□ -1.03
TMEM260-209ENST00000556079 FBXO3Q9UK99 471 aa8.62□□□□□ -1.03
TMEM260-209ENST00000556079 C4AP0C0L4 1744 aa8.62□□□□□ -1.03
TMEM260-209ENST00000556079 SIPA1L3O60292 1781 aaPredicted RBP8.61□□□□□ -1.03
TMEM260-209ENST00000556079 PTCD1O75127 700 aaKnown RBP8.61□□□□□ -1.03
TMEM260-209ENST00000556079 CABP4P57796 275 aa8.61□□□□□ -1.03
TMEM260-209ENST00000556079 C1orf141Q5JVX7 400 aa8.61□□□□□ -1.03
TMEM260-209ENST00000556079 NFATC2IPQ8NCF5 419 aa8.61□□□□□ -1.03
TMEM260-209ENST00000556079 DCAF5Q96JK2 942 aa8.61□□□□□ -1.03
TMEM260-209ENST00000556079 WWC3Q9ULE0 1092 aa8.61□□□□□ -1.03
TMEM260-209ENST00000556079 MRC1P22897 1456 aa8.61□□□□□ -1.03
TMEM260-209ENST00000556079 DLG5Q8TDM6 1919 aa8.6□□□□□ -1.03
TMEM260-209ENST00000556079 KCPQ6ZWJ8 1503 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms