RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 THUMPD2Q9BTF0 503 aaKnown RBP14.5□□□□□ -0.09
SHMT2-220ENST00000555634 TMOD3Q9NYL9 352 aa14.5□□□□□ -0.09
SHMT2-220ENST00000555634 BTAF1O14981 1849 aa14.5□□□□□ -0.09
SHMT2-220ENST00000555634 FANCIQ9NVI1 1328 aa14.49□□□□□ -0.09
SHMT2-220ENST00000555634 SLFN5Q08AF3 891 aa14.49□□□□□ -0.09
SHMT2-220ENST00000555634 NKX1-1Q15270 411 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-220ENST00000555634 TAF7Q15545 349 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-220ENST00000555634 SEPT12Q8IYM1 358 aa14.49□□□□□ -0.09
SHMT2-220ENST00000555634 CHMP4AQ9BY43 222 aa14.49□□□□□ -0.09
SHMT2-220ENST00000555634 SLC52A2Q9HAB3 445 aa14.49□□□□□ -0.09
SHMT2-220ENST00000555634 BTBD11A6QL63 1104 aa14.48□□□□□ -0.09
SHMT2-220ENST00000555634 CT47B1P0C2W7 299 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-220ENST00000555634 IL17REQ8NFR9 667 aa14.47□□□□□ -0.09
SHMT2-220ENST00000555634 SYTL4Q96C24 671 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-220ENST00000555634 SOS1Q07889 1333 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-220ENST00000555634 C5P01031 1676 aa14.46□□□□□ -0.09
SHMT2-220ENST00000555634 ONECUT3O60422 494 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-220ENST00000555634 TSR2Q969E8 191 aaKnown RBP14.46□□□□□ -0.09
SHMT2-220ENST00000555634 BCL9O00512 1426 aa14.46□□□□□ -0.09
SHMT2-220ENST00000555634 RGS12O14924 1447 aa14.46□□□□□ -0.09
SHMT2-220ENST00000555634 KRT27Q7Z3Y8 459 aa14.45□□□□□ -0.1
SHMT2-220ENST00000555634 CDCA7LQ96GN5 454 aa14.45□□□□□ -0.1
SHMT2-220ENST00000555634 LGR6Q9HBX8 967 aa14.45□□□□□ -0.1
SHMT2-220ENST00000555634 MBIPQ9NS73 344 aa14.45□□□□□ -0.1
SHMT2-220ENST00000555634 ZNF831Q5JPB2 1677 aa14.45□□□□□ -0.1
SHMT2-220ENST00000555634 CICQ96RK0 1608 aaPredicted RBP14.44□□□□□ -0.1
SHMT2-220ENST00000555634 CHL1O00533 1208 aa14.44□□□□□ -0.1
SHMT2-220ENST00000555634 DUSP27Q5VZP5 1158 aa14.44□□□□□ -0.1
SHMT2-220ENST00000555634 ZNF428Q96B54 188 aa14.44□□□□□ -0.1
SHMT2-220ENST00000555634 RGPD3A6NKT7 1758 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-220ENST00000555634 RGPD4Q7Z3J3 1758 aa14.43□□□□□ -0.1
SHMT2-220ENST00000555634 ZNF853P0CG23 659 aa14.43□□□□□ -0.1
SHMT2-220ENST00000555634 MARCH10Q8NA82 808 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-220ENST00000555634 NFATC2IPQ8NCF5 419 aa14.43□□□□□ -0.1
SHMT2-220ENST00000555634 LY75O60449 1722 aa14.42□□□□□ -0.1
SHMT2-220ENST00000555634 FAM196AQ6ZSG2 479 aa14.42□□□□□ -0.1
SHMT2-220ENST00000555634 FMNL2Q96PY5 1086 aa14.42□□□□□ -0.1
SHMT2-220ENST00000555634 TNS1Q9HBL0 1735 aaKnown RBP14.41□□□□□ -0.1
SHMT2-220ENST00000555634 HOXB7P09629 217 aa14.41□□□□□ -0.1
SHMT2-220ENST00000555634 ZNF790Q6PG37 636 aa14.41□□□□□ -0.1
SHMT2-220ENST00000555634 TRMT2AQ8IZ69 625 aaKnown RBP14.41□□□□□ -0.1
SHMT2-220ENST00000555634 SMARCC1Q92922 1105 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-220ENST00000555634 KCPQ6ZWJ8 1503 aa14.41□□□□□ -0.1
SHMT2-220ENST00000555634 HMGB2P26583 209 aaKnown RBP14.4□□□□□ -0.1
SHMT2-220ENST00000555634 CANXP27824 592 aaKnown RBP14.4□□□□□ -0.1
SHMT2-220ENST00000555634 EXOSC9Q06265 439 aaKnown RBP14.4□□□□□ -0.1
SHMT2-220ENST00000555634 TWISTNBQ3B726 338 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-220ENST00000555634 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-220ENST00000555634 RCAN3Q9UKA8 241 aa14.4□□□□□ -0.1
SHMT2-220ENST00000555634 SRCAPQ6ZRS2 3230 aa14.4□□□□□ -0.1
SHMT2-220ENST00000555634 TJP1Q07157 1748 aa14.4□□□□□ -0.1
SHMT2-220ENST00000555634 COL5A3P25940 1745 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-220ENST00000555634 PRIM1P49642 420 aaKnown RBP14.39□□□□□ -0.11
SHMT2-220ENST00000555634 ACSBG1Q96GR2 724 aa14.39□□□□□ -0.11
SHMT2-220ENST00000555634 STK31Q9BXU1 1019 aa14.39□□□□□ -0.11
SHMT2-220ENST00000555634 SPINK5Q9NQ38 1064 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-220ENST00000555634 NEFLP07196 543 aa14.38□□□□□ -0.11
SHMT2-220ENST00000555634 POTEAQ6S8J7 498 aa14.38□□□□□ -0.11
SHMT2-220ENST00000555634 MIS18AQ9NYP9 233 aa14.38□□□□□ -0.11
SHMT2-220ENST00000555634 KIF16BQ96L93 1317 aa14.38□□□□□ -0.11
SHMT2-220ENST00000555634 TAF1LQ8IZX4 1826 aa14.37□□□□□ -0.11
SHMT2-220ENST00000555634 RGS17Q9UGC6 210 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-220ENST00000555634 PALLDQ8WX93 1383 aa14.36□□□□□ -0.11
SHMT2-220ENST00000555634 HEG1Q9ULI3 1381 aa14.36□□□□□ -0.11
SHMT2-220ENST00000555634 SNRPA1P09661 255 aaKnown RBP14.36□□□□□ -0.11
SHMT2-220ENST00000555634 EIF4A1P60842 406 aaKnown RBP14.36□□□□□ -0.11
SHMT2-220ENST00000555634 CCDC30Q5VVM6 783 aa14.36□□□□□ -0.11
SHMT2-220ENST00000555634 PIGBQ92521 554 aa14.36□□□□□ -0.11
SHMT2-220ENST00000555634 TEX13AQ9BXU3 409 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-220ENST00000555634 SMC4Q9NTJ3 1288 aa14.36□□□□□ -0.11
SHMT2-220ENST00000555634 N4BP2Q86UW6 1770 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-220ENST00000555634 SLC39A6Q13433 755 aa14.35□□□□□ -0.11
SHMT2-220ENST00000555634 ALDH1L2Q3SY69 923 aa14.35□□□□□ -0.11
SHMT2-220ENST00000555634 HDGFL1Q5TGJ6 251 aa14.35□□□□□ -0.11
SHMT2-220ENST00000555634 RBM42Q9BTD8 480 aaKnown RBP14.35□□□□□ -0.11
SHMT2-220ENST00000555634 BCL11BQ9C0K0 894 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-220ENST00000555634 ELL2O00472 640 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-220ENST00000555634 NPM2Q86SE8 214 aaKnown RBP14.34□□□□□ -0.11
SHMT2-220ENST00000555634 VSIG10Q8N0Z9 540 aa14.34□□□□□ -0.11
SHMT2-220ENST00000555634 PTCD1O75127 700 aaKnown RBP14.33□□□□□ -0.12
SHMT2-220ENST00000555634 STARD3NLO95772 234 aa14.33□□□□□ -0.12
SHMT2-220ENST00000555634 SF3B2Q13435 895 aaKnown RBP14.33□□□□□ -0.12
SHMT2-220ENST00000555634 FAM182BQ5T319 152 aa14.33□□□□□ -0.12
SHMT2-220ENST00000555634 C8orf58Q8NAV2 365 aa14.33□□□□□ -0.12
SHMT2-220ENST00000555634 ZNF496Q96IT1 587 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-220ENST00000555634 ERBB4Q15303 1308 aa14.33□□□□□ -0.12
SHMT2-220ENST00000555634 RREB1Q92766 1687 aa14.33□□□□□ -0.12
SHMT2-220ENST00000555634 IPO8O15397 1037 aaKnown RBP14.32□□□□□ -0.12
SHMT2-220ENST00000555634 MS4A1P11836 297 aa14.32□□□□□ -0.12
SHMT2-220ENST00000555634 ATG3Q9NT62 314 aa14.32□□□□□ -0.12
SHMT2-220ENST00000555634 ASAP1Q9ULH1 1129 aa14.32□□□□□ -0.12
SHMT2-220ENST00000555634 GIGYF1O75420 1035 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-220ENST00000555634 EIF2S2P20042 333 aaKnown RBP14.31□□□□□ -0.12
SHMT2-220ENST00000555634 DBF4Q9UBU7 674 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-220ENST00000555634 ARFGEF2Q9Y6D5 1785 aa14.31□□□□□ -0.12
SHMT2-220ENST00000555634 AFDNP55196 1824 aaKnown RBP14.31□□□□□ -0.12
SHMT2-220ENST00000555634 C4BP0C0L5 1744 aa14.3□□□□□ -0.12
SHMT2-220ENST00000555634 KCNQ3O43525 872 aa14.3□□□□□ -0.12
SHMT2-220ENST00000555634 VAMP4O75379 141 aa14.3□□□□□ -0.12
SHMT2-220ENST00000555634 TRIM37O94972 964 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms