RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 CHD1LQ86WJ1 897 aa9.71□□□□□ -0.86
SYNE2-220ENST00000555612 PDRG1Q9NUG6 133 aa9.71□□□□□ -0.86
SYNE2-220ENST00000555612 SEC63Q9UGP8 760 aaKnown RBP9.71□□□□□ -0.86
SYNE2-220ENST00000555612 ST5P78524 1137 aa9.71□□□□□ -0.86
SYNE2-220ENST00000555612 RDXP35241 583 aaKnown RBP9.7□□□□□ -0.86
SYNE2-220ENST00000555612 GSE1Q14687 1217 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 NBPF6Q5VWK0 638 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 NBPF5PQ86XG9 351 aaPredicted RBP9.7□□□□□ -0.86
SYNE2-220ENST00000555612 RPAP2Q8IXW5 612 aaPredicted RBP9.7□□□□□ -0.86
SYNE2-220ENST00000555612 TMEM57Q8N5G2 664 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 NBPF4Q96M43 638 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 BOLA2Q9H3K6 86 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 BMP2KQ9NSY1 1161 aaPredicted RBP9.7□□□□□ -0.86
SYNE2-220ENST00000555612 MAP3K12Q12852 859 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 ATP5J2-PTCD1G3V325 749 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 RUFY1Q96T51 708 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 TEX13AQ9BXU3 409 aaPredicted RBP9.7□□□□□ -0.86
SYNE2-220ENST00000555612 DNAAF4Q8WXU2 420 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 FEZ1Q99689 392 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 NAPBQ9H115 298 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 PIP4K2AP48426 406 aaPredicted RBP9.7□□□□□ -0.86
SYNE2-220ENST00000555612 STIM1Q13586 685 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 MNS1Q8NEH6 495 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 FAM13BQ9NYF5 915 aa9.7□□□□□ -0.86
SYNE2-220ENST00000555612 HYPKQ9NX55 129 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 NPHP3Q7Z494 1330 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 RANBP6O60518 1105 aaKnown RBP9.69□□□□□ -0.86
SYNE2-220ENST00000555612 SLF2Q8IX21 1173 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 ZNF444Q8N0Y2 327 aaPredicted RBP9.69□□□□□ -0.86
SYNE2-220ENST00000555612 TRIM5Q9C035 493 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 DBF4Q9UBU7 674 aaPredicted RBP9.69□□□□□ -0.86
SYNE2-220ENST00000555612 CLEC11AQ9Y240 323 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 PRPF40AO75400 957 aaKnown RBP9.69□□□□□ -0.86
SYNE2-220ENST00000555612 TNIP1Q15025 636 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 LARP1BQ659C4 914 aaKnown RBP9.69□□□□□ -0.86
SYNE2-220ENST00000555612 KIF1BPQ96EK5 621 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 CCDC8Q9H0W5 538 aaPredicted RBP9.69□□□□□ -0.86
SYNE2-220ENST00000555612 PPP1R42Q7Z4L9 355 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 ABCA5Q8WWZ7 1642 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 ATP6V1AP38606 617 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 CABLES1Q8TDN4 633 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 CDC5LQ99459 802 aaKnown RBP9.69□□□□□ -0.86
SYNE2-220ENST00000555612 ABCC5O15440 1437 aa9.69□□□□□ -0.86
SYNE2-220ENST00000555612 SMARCE1Q969G3 411 aa9.68□□□□□ -0.86
SYNE2-220ENST00000555612 SMARCA5O60264 1052 aaPredicted RBP9.68□□□□□ -0.86
SYNE2-220ENST00000555612 NCOA1Q15788 1441 aa9.68□□□□□ -0.86
SYNE2-220ENST00000555612 DDB1Q16531 1140 aa9.68□□□□□ -0.86
SYNE2-220ENST00000555612 AEBP1Q8IUX7 1158 aa9.68□□□□□ -0.86
SYNE2-220ENST00000555612 KRT32Q14532 448 aa9.68□□□□□ -0.86
SYNE2-220ENST00000555612 SLC4A8Q2Y0W8 1093 aa9.68□□□□□ -0.86
SYNE2-220ENST00000555612 CAVIN1Q6NZI2 390 aaKnown RBP9.68□□□□□ -0.86
SYNE2-220ENST00000555612 SEPT11Q9NVA2 429 aaKnown RBP9.68□□□□□ -0.86
SYNE2-220ENST00000555612 NCKAP5LQ9HCH0 1330 aa9.68□□□□□ -0.86
SYNE2-220ENST00000555612 ZCRB1Q8TBF4 217 aaKnown RBP9.68□□□□□ -0.86
SYNE2-220ENST00000555612 DDX11Q96FC9 970 aa9.68□□□□□ -0.86
SYNE2-220ENST00000555612 TEX14Q8IWB6 1497 aa9.68□□□□□ -0.86
SYNE2-220ENST00000555612 DHX29Q7Z478 1369 aaKnown RBP9.67□□□□□ -0.86
SYNE2-220ENST00000555612 PCF11O94913 1555 aaKnown RBP9.67□□□□□ -0.86
SYNE2-220ENST00000555612 WASF1Q92558 559 aa9.67□□□□□ -0.86
SYNE2-220ENST00000555612 JARID2Q92833 1246 aaPredicted RBP9.67□□□□□ -0.86
SYNE2-220ENST00000555612 MAP3K2Q9Y2U5 619 aa9.67□□□□□ -0.86
SYNE2-220ENST00000555612 UGGT2Q9NYU1 1516 aa9.67□□□□□ -0.86
SYNE2-220ENST00000555612 LDHAL6AQ6ZMR3 332 aa9.67□□□□□ -0.86
SYNE2-220ENST00000555612 TTC21BQ7Z4L5 1316 aa9.67□□□□□ -0.86
SYNE2-220ENST00000555612 LMTK3Q96Q04 1460 aa9.67□□□□□ -0.86
SYNE2-220ENST00000555612 MX1P20591 662 aa9.67□□□□□ -0.86
SYNE2-220ENST00000555612 CWC25Q9NXE8 425 aaPredicted RBP9.67□□□□□ -0.86
SYNE2-220ENST00000555612 LRRFIP2Q9Y608 721 aaKnown RBP9.67□□□□□ -0.86
SYNE2-220ENST00000555612 MYO1BO43795 1136 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 SERPINC1P01008 464 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 POLD1P28340 1107 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 CCDC82Q8N4S0 544 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 ZNHIT6Q9NWK9 470 aaKnown RBP9.66□□□□□ -0.86
SYNE2-220ENST00000555612 TFCP2L1Q9NZI6 479 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 ASXL2Q76L83 1435 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 CASTP20810 708 aaKnown RBP9.66□□□□□ -0.86
SYNE2-220ENST00000555612 CDR1P51861 262 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 NBPF14Q5TI25 921 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 CUL5Q93034 780 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 U3KPZ7 1027 aaPredicted RBP9.66□□□□□ -0.86
SYNE2-220ENST00000555612 SPDYE4A6NLX3 237 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 GLRX3O76003 335 aaKnown RBP9.66□□□□□ -0.86
SYNE2-220ENST00000555612 PPP4R3AQ6IN85 833 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 TMEM87AQ8NBN3 555 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 CTCFLQ8NI51 663 aaPredicted RBP9.66□□□□□ -0.86
SYNE2-220ENST00000555612 DEF6Q9H4E7 631 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 C14orf93Q9H972 538 aaKnown RBP9.66□□□□□ -0.86
SYNE2-220ENST00000555612 RAB11FIP3O75154 756 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 SKIDA1Q1XH10 827 aa9.66□□□□□ -0.86
SYNE2-220ENST00000555612 SNRPA1P09661 255 aaKnown RBP9.65□□□□□ -0.86
SYNE2-220ENST00000555612 PRPF40BQ6NWY9 871 aaKnown RBP9.65□□□□□ -0.86
SYNE2-220ENST00000555612 UBE3BQ7Z3V4 1068 aa9.65□□□□□ -0.86
SYNE2-220ENST00000555612 SETDB2Q96T68 719 aa9.65□□□□□ -0.86
SYNE2-220ENST00000555612 SNRKQ9NRH2 765 aa9.65□□□□□ -0.86
SYNE2-220ENST00000555612 ANXA1P04083 346 aa9.65□□□□□ -0.86
SYNE2-220ENST00000555612 FBLN1P23142 703 aa9.65□□□□□ -0.86
SYNE2-220ENST00000555612 DHX8Q14562 1220 aaKnown RBP9.65□□□□□ -0.86
SYNE2-220ENST00000555612 CABP5Q9NP86 173 aa9.65□□□□□ -0.86
SYNE2-220ENST00000555612 LETM1O95202 739 aaPredicted RBP9.65□□□□□ -0.86
SYNE2-220ENST00000555612 MBD3O95983 291 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms