RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 A0A0G2JS52 829 aa13.18□□□□□ -0.3
SRP54-208ENST00000555557 VAMP4O75379 141 aa13.18□□□□□ -0.3
SRP54-208ENST00000555557 TWISTNBQ3B726 338 aaPredicted RBP13.18□□□□□ -0.3
SRP54-208ENST00000555557 GJD4Q96KN9 370 aaPredicted RBP13.18□□□□□ -0.3
SRP54-208ENST00000555557 QTRT2Q9H974 415 aaKnown RBP13.18□□□□□ -0.3
SRP54-208ENST00000555557 LRRC37A3O60309 1634 aa13.18□□□□□ -0.3
SRP54-208ENST00000555557 TCERG1O14776 1098 aaKnown RBP13.17□□□□□ -0.3
SRP54-208ENST00000555557 CABP4P57796 275 aa13.17□□□□□ -0.3
SRP54-208ENST00000555557 SLC39A6Q13433 755 aa13.17□□□□□ -0.3
SRP54-208ENST00000555557 RNF123Q5XPI4 1314 aa13.17□□□□□ -0.3
SRP54-208ENST00000555557 RRP1P56182 461 aaKnown RBP13.17□□□□□ -0.3
SRP54-208ENST00000555557 TRPC5Q9UL62 973 aaPredicted RBP13.17□□□□□ -0.3
SRP54-208ENST00000555557 FKBP8Q14318 412 aa13.16□□□□□ -0.3
SRP54-208ENST00000555557 BABAM1Q9NWV8 329 aa13.16□□□□□ -0.3
SRP54-208ENST00000555557 SHANK3Q9BYB0 1731 aa13.16□□□□□ -0.3
SRP54-208ENST00000555557 CT47B1P0C2W7 299 aaPredicted RBP13.15□□□□□ -0.3
SRP54-208ENST00000555557 MARCH10Q8NA82 808 aaPredicted RBP13.15□□□□□ -0.3
SRP54-208ENST00000555557 SSH1Q8WYL5 1049 aa13.15□□□□□ -0.3
SRP54-208ENST00000555557 TNS2Q63HR2 1409 aa13.15□□□□□ -0.3
SRP54-208ENST00000555557 EIF4A1P60842 406 aaKnown RBP13.15□□□□□ -0.3
SRP54-208ENST00000555557 ATRNO75882 1429 aa13.14□□□□□ -0.31
SRP54-208ENST00000555557 ADAMTS7Q9UKP4 1686 aa13.14□□□□□ -0.31
SRP54-208ENST00000555557 ERVV-2B6SEH9 535 aa13.14□□□□□ -0.31
SRP54-208ENST00000555557 NEFLP07196 543 aa13.14□□□□□ -0.31
SRP54-208ENST00000555557 FRAT1Q92837 279 aaPredicted RBP13.14□□□□□ -0.31
SRP54-208ENST00000555557 SMC4Q9NTJ3 1288 aa13.14□□□□□ -0.31
SRP54-208ENST00000555557 ZNF790Q6PG37 636 aa13.13□□□□□ -0.31
SRP54-208ENST00000555557 SCN11AQ9UI33 1791 aa13.13□□□□□ -0.31
SRP54-208ENST00000555557 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.13□□□□□ -0.31
SRP54-208ENST00000555557 WNK3Q9BYP7 1800 aa13.13□□□□□ -0.31
SRP54-208ENST00000555557 NECTIN2Q92692 538 aa13.13□□□□□ -0.31
SRP54-208ENST00000555557 GLI3P10071 1580 aa13.13□□□□□ -0.31
SRP54-208ENST00000555557 VIRMAQ69YN4 1812 aaKnown RBP13.12□□□□□ -0.31
SRP54-208ENST00000555557 C20orf194Q5TEA3 1177 aa13.12□□□□□ -0.31
SRP54-208ENST00000555557 SYTL4Q96C24 671 aaPredicted RBP13.12□□□□□ -0.31
SRP54-208ENST00000555557 ACSBG1Q96GR2 724 aa13.12□□□□□ -0.31
SRP54-208ENST00000555557 PRAMEF22A3QJZ6 481 aa13.11□□□□□ -0.31
SRP54-208ENST00000555557 FAM182BQ5T319 152 aa13.11□□□□□ -0.31
SRP54-208ENST00000555557 PIGBQ92521 554 aa13.11□□□□□ -0.31
SRP54-208ENST00000555557 TMOD3Q9NYL9 352 aa13.11□□□□□ -0.31
SRP54-208ENST00000555557 MRC1P22897 1456 aa13.11□□□□□ -0.31
SRP54-208ENST00000555557 ONECUT3O60422 494 aaPredicted RBP13.11□□□□□ -0.31
SRP54-208ENST00000555557 PRIM1P49642 420 aaKnown RBP13.11□□□□□ -0.31
SRP54-208ENST00000555557 ALDH1L2Q3SY69 923 aa13.11□□□□□ -0.31
SRP54-208ENST00000555557 SEPT12Q8IYM1 358 aa13.11□□□□□ -0.31
SRP54-208ENST00000555557 ZNF496Q96IT1 587 aaPredicted RBP13.11□□□□□ -0.31
SRP54-208ENST00000555557 TNNQ9UQP3 1299 aa13.11□□□□□ -0.31
SRP54-208ENST00000555557 EIF2S2P20042 333 aaKnown RBP13.1□□□□□ -0.31
SRP54-208ENST00000555557 CANXP27824 592 aaKnown RBP13.1□□□□□ -0.31
SRP54-208ENST00000555557 ZNF772Q68DY9 489 aaPredicted RBP13.1□□□□□ -0.31
SRP54-208ENST00000555557 TTC5Q8N0Z6 440 aa13.1□□□□□ -0.31
SRP54-208ENST00000555557 MRPL50Q8N5N7 158 aaKnown RBP13.1□□□□□ -0.31
SRP54-208ENST00000555557 ZNF428Q96B54 188 aa13.1□□□□□ -0.31
SRP54-208ENST00000555557 NOB1Q9ULX3 412 aaKnown RBP13.1□□□□□ -0.31
SRP54-208ENST00000555557 SIPA1L3O60292 1781 aaPredicted RBP13.1□□□□□ -0.31
SRP54-208ENST00000555557 GIGYF1O75420 1035 aaPredicted RBP13.09□□□□□ -0.31
SRP54-208ENST00000555557 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.09□□□□□ -0.31
SRP54-208ENST00000555557 ASAP1Q9ULH1 1129 aa13.09□□□□□ -0.31
SRP54-208ENST00000555557 TOGARAM1Q9Y4F4 1720 aa13.09□□□□□ -0.31
SRP54-208ENST00000555557 KDM3BQ7LBC6 1761 aa13.08□□□□□ -0.31
SRP54-208ENST00000555557 KCNQ2O43526 872 aa13.08□□□□□ -0.32
SRP54-208ENST00000555557 PTCD1O75127 700 aaKnown RBP13.08□□□□□ -0.32
SRP54-208ENST00000555557 SLC4A2P04920 1241 aa13.08□□□□□ -0.32
SRP54-208ENST00000555557 HDGFL1Q5TGJ6 251 aa13.08□□□□□ -0.32
SRP54-208ENST00000555557 CLUAP1Q96AJ1 413 aa13.08□□□□□ -0.32
SRP54-208ENST00000555557 KAT6BQ8WYB5 2073 aa13.08□□□□□ -0.32
SRP54-208ENST00000555557 HEG1Q9ULI3 1381 aa13.08□□□□□ -0.32
SRP54-208ENST00000555557 ATG3Q9NT62 314 aa13.07□□□□□ -0.32
SRP54-208ENST00000555557 CCDC30Q5VVM6 783 aa13.07□□□□□ -0.32
SRP54-208ENST00000555557 PANK1Q8TE04 598 aa13.07□□□□□ -0.32
SRP54-208ENST00000555557 FMNL2Q96PY5 1086 aa13.07□□□□□ -0.32
SRP54-208ENST00000555557 THSD7AQ9UPZ6 1657 aa13.06□□□□□ -0.32
SRP54-208ENST00000555557 BCL9O00512 1426 aa13.06□□□□□ -0.32
SRP54-208ENST00000555557 RLBP1P12271 317 aa13.06□□□□□ -0.32
SRP54-208ENST00000555557 RBM6P78332 1123 aaKnown RBP13.06□□□□□ -0.32
SRP54-208ENST00000555557 ZKSCAN2Q63HK3 967 aa13.06□□□□□ -0.32
SRP54-208ENST00000555557 USP16Q9Y5T5 823 aa13.06□□□□□ -0.32
SRP54-208ENST00000555557 HOXB7P09629 217 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 TRIM27P14373 513 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 BRPF1P55201 1214 aaPredicted RBP13.05□□□□□ -0.32
SRP54-208ENST00000555557 G2E3Q7L622 706 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 PTF1AQ7RTS3 328 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 EXOC6Q8TAG9 804 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 CRBNQ96SW2 442 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 STK31Q9BXU1 1019 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 ANXA1P04083 346 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 SNRPA1P09661 255 aaKnown RBP13.05□□□□□ -0.32
SRP54-208ENST00000555557 ATF7IPQ6VMQ6 1270 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 CHPF2Q9P2E5 772 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 SOS1Q07889 1333 aaPredicted RBP13.05□□□□□ -0.32
SRP54-208ENST00000555557 KIF16BQ96L93 1317 aa13.05□□□□□ -0.32
SRP54-208ENST00000555557 RBM42Q9BTD8 480 aaKnown RBP13.04□□□□□ -0.32
SRP54-208ENST00000555557 IPO8O15397 1037 aaKnown RBP13.03□□□□□ -0.32
SRP54-208ENST00000555557 RXRBP28702 533 aa13.03□□□□□ -0.32
SRP54-208ENST00000555557 COG6Q9Y2V7 657 aa13.03□□□□□ -0.32
SRP54-208ENST00000555557 DOT1LQ8TEK3 1739 aa13.03□□□□□ -0.32
SRP54-208ENST00000555557 PIP4K2AP48426 406 aaPredicted RBP13.03□□□□□ -0.32
SRP54-208ENST00000555557 PDE3AQ14432 1141 aa13.03□□□□□ -0.32
SRP54-208ENST00000555557 PROSER3Q2NL68 480 aa13.03□□□□□ -0.32
SRP54-208ENST00000555557 PHAXQ9H814 394 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms