RNA–Protein interactions for RNA: ENST00000555323.1

SYNE2-219, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 389 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-219ENST00000555323 ATG3Q9NT62 314 aa16.62■□□□□ 0.25
SYNE2-219ENST00000555323 ZNF521Q96K83 1311 aa16.62■□□□□ 0.25
SYNE2-219ENST00000555323 NHSQ6T4R5 1651 aa16.62■□□□□ 0.25
SYNE2-219ENST00000555323 APBA3O96018 575 aa16.61■□□□□ 0.25
SYNE2-219ENST00000555323 CALD1Q05682 793 aaKnown RBP16.61■□□□□ 0.25
SYNE2-219ENST00000555323 SMARCC1Q92922 1105 aaPredicted RBP16.61■□□□□ 0.25
SYNE2-219ENST00000555323 ASAP1Q9ULH1 1129 aa16.61■□□□□ 0.25
SYNE2-219ENST00000555323 DOT1LQ8TEK3 1739 aa16.61■□□□□ 0.25
SYNE2-219ENST00000555323 CHL1O00533 1208 aa16.6■□□□□ 0.25
SYNE2-219ENST00000555323 ZNF853P0CG23 659 aa16.6■□□□□ 0.25
SYNE2-219ENST00000555323 ITGB4P16144 1822 aa16.59■□□□□ 0.25
SYNE2-219ENST00000555323 KAT6BQ8WYB5 2073 aa16.59■□□□□ 0.25
SYNE2-219ENST00000555323 SENP3-EIF4A1A0A087X0R7 540 aa16.59■□□□□ 0.25
SYNE2-219ENST00000555323 BTBD11A6QL63 1104 aa16.59■□□□□ 0.25
SYNE2-219ENST00000555323 SF3B2Q13435 895 aaKnown RBP16.59■□□□□ 0.25
SYNE2-219ENST00000555323 ZNF790Q6PG37 636 aa16.59■□□□□ 0.25
SYNE2-219ENST00000555323 CFAP44Q96MT7 982 aa16.59■□□□□ 0.25
SYNE2-219ENST00000555323 SALL2Q9Y467 1007 aaPredicted RBP16.59■□□□□ 0.25
SYNE2-219ENST00000555323 IL16Q14005 1332 aa16.59■□□□□ 0.25
SYNE2-219ENST00000555323 IFT57Q9NWB7 429 aa16.58■□□□□ 0.24
SYNE2-219ENST00000555323 BAG6P46379 1132 aa16.57■□□□□ 0.24
SYNE2-219ENST00000555323 SLC39A6Q13433 755 aa16.57■□□□□ 0.24
SYNE2-219ENST00000555323 PROM2Q8N271 834 aa16.57■□□□□ 0.24
SYNE2-219ENST00000555323 CAMKK2Q96RR4 588 aa16.57■□□□□ 0.24
SYNE2-219ENST00000555323 GNAI1P63096 354 aa16.56■□□□□ 0.24
SYNE2-219ENST00000555323 MIS18AQ9NYP9 233 aa16.56■□□□□ 0.24
SYNE2-219ENST00000555323 VIRMAQ69YN4 1812 aaKnown RBP16.56■□□□□ 0.24
SYNE2-219ENST00000555323 SIPA1L3O60292 1781 aaPredicted RBP16.56■□□□□ 0.24
SYNE2-219ENST00000555323 PALLDQ8WX93 1383 aa16.55■□□□□ 0.24
SYNE2-219ENST00000555323 BTAF1O14981 1849 aa16.55■□□□□ 0.24
SYNE2-219ENST00000555323 KCNQ3O43525 872 aa16.55■□□□□ 0.24
SYNE2-219ENST00000555323 HNRNPUQ00839 825 aaKnown RBP eCLIP16.55■□□□□ 0.24
SYNE2-219ENST00000555323 EN1Q05925 392 aaPredicted RBP16.55■□□□□ 0.24
SYNE2-219ENST00000555323 TNS1Q9HBL0 1735 aaKnown RBP16.54■□□□□ 0.24
SYNE2-219ENST00000555323 LOC102724428A0A0B4J2F2 783 aa16.54■□□□□ 0.24
SYNE2-219ENST00000555323 SIK1P57059 783 aa16.54■□□□□ 0.24
SYNE2-219ENST00000555323 SLC27A3Q5K4L6 730 aa16.54■□□□□ 0.24
SYNE2-219ENST00000555323 DEFB132Q7Z7B7 95 aa16.54■□□□□ 0.24
SYNE2-219ENST00000555323 TTC5Q8N0Z6 440 aa16.54■□□□□ 0.24
SYNE2-219ENST00000555323 VSIG10Q8N0Z9 540 aa16.54■□□□□ 0.24
SYNE2-219ENST00000555323 TSPYL4Q9UJ04 414 aa16.54■□□□□ 0.24
SYNE2-219ENST00000555323 SOCS7O14512 581 aa16.53■□□□□ 0.24
SYNE2-219ENST00000555323 HMGB2P26583 209 aaKnown RBP16.53■□□□□ 0.24
SYNE2-219ENST00000555323 EIF4A1P60842 406 aaKnown RBP16.53■□□□□ 0.24
SYNE2-219ENST00000555323 GOLGA2Q08379 1002 aa16.53■□□□□ 0.24
SYNE2-219ENST00000555323 TXNRD1Q16881 649 aa16.53■□□□□ 0.24
SYNE2-219ENST00000555323 ZNF496Q96IT1 587 aaPredicted RBP16.53■□□□□ 0.24
SYNE2-219ENST00000555323 SLC4A9Q96Q91 983 aa16.53■□□□□ 0.24
SYNE2-219ENST00000555323 MBIPQ9NS73 344 aa16.53■□□□□ 0.24
SYNE2-219ENST00000555323 HEG1Q9ULI3 1381 aa16.52■□□□□ 0.24
SYNE2-219ENST00000555323 EZH2Q15910 746 aaKnown RBP16.52■□□□□ 0.24
SYNE2-219ENST00000555323 FMNL2Q96PY5 1086 aa16.52■□□□□ 0.24
SYNE2-219ENST00000555323 SPINK5Q9NQ38 1064 aaPredicted RBP16.52■□□□□ 0.24
SYNE2-219ENST00000555323 ZBED9Q6R2W3 1325 aa16.51■□□□□ 0.23
SYNE2-219ENST00000555323 PTCD1O75127 700 aaKnown RBP16.51■□□□□ 0.23
SYNE2-219ENST00000555323 TRMT2AQ8IZ69 625 aaKnown RBP16.51■□□□□ 0.23
SYNE2-219ENST00000555323 LRRC4BQ9NT99 713 aa16.51■□□□□ 0.23
SYNE2-219ENST00000555323 LAS1LQ9Y4W2 734 aaKnown RBP16.51■□□□□ 0.23
SYNE2-219ENST00000555323 PAPPAQ13219 1627 aa16.51■□□□□ 0.23
SYNE2-219ENST00000555323 KCPQ6ZWJ8 1503 aa16.5■□□□□ 0.23
SYNE2-219ENST00000555323 ATP6V1AP38606 617 aa16.5■□□□□ 0.23
SYNE2-219ENST00000555323 SLFN5Q08AF3 891 aa16.5■□□□□ 0.23
SYNE2-219ENST00000555323 RBM42Q9BTD8 480 aaKnown RBP16.5■□□□□ 0.23
SYNE2-219ENST00000555323 TEX13AQ9BXU3 409 aaPredicted RBP16.5■□□□□ 0.23
SYNE2-219ENST00000555323 CCNL1Q9UK58 526 aaPredicted RBP16.5■□□□□ 0.23
SYNE2-219ENST00000555323 RGPD3A6NKT7 1758 aaPredicted RBP16.49■□□□□ 0.23
SYNE2-219ENST00000555323 RGPD4Q7Z3J3 1758 aa16.49■□□□□ 0.23
SYNE2-219ENST00000555323 E9PSI1 815 aa16.49■□□□□ 0.23
SYNE2-219ENST00000555323 LY75O60449 1722 aa16.49■□□□□ 0.23
SYNE2-219ENST00000555323 GIGYF1O75420 1035 aaPredicted RBP16.49■□□□□ 0.23
SYNE2-219ENST00000555323 SNRPA1P09661 255 aaKnown RBP16.49■□□□□ 0.23
SYNE2-219ENST00000555323 MYH16Q9H6N6 1097 aa16.49■□□□□ 0.23
SYNE2-219ENST00000555323 ITPK1Q13572 414 aa16.48■□□□□ 0.23
SYNE2-219ENST00000555323 ZNF831Q5JPB2 1677 aa16.47■□□□□ 0.23
SYNE2-219ENST00000555323 KDM3BQ7LBC6 1761 aa16.47■□□□□ 0.23
SYNE2-219ENST00000555323 UBR2Q8IWV8 1755 aa16.47■□□□□ 0.23
SYNE2-219ENST00000555323 CDCA7LQ96GN5 454 aa16.47■□□□□ 0.23
SYNE2-219ENST00000555323 FANCIQ9NVI1 1328 aa16.46■□□□□ 0.23
SYNE2-219ENST00000555323 HOXB7P09629 217 aa16.46■□□□□ 0.23
SYNE2-219ENST00000555323 KCNQ4P56696 695 aa16.46■□□□□ 0.23
SYNE2-219ENST00000555323 RC3H1Q5TC82 1133 aaKnown RBP16.46■□□□□ 0.23
SYNE2-219ENST00000555323 DNAJC10Q8IXB1 793 aa16.46■□□□□ 0.23
SYNE2-219ENST00000555323 TSR2Q969E8 191 aaKnown RBP16.46■□□□□ 0.23
SYNE2-219ENST00000555323 SOS1Q07889 1333 aaPredicted RBP16.45■□□□□ 0.22
SYNE2-219ENST00000555323 CYP19A1P11511 503 aaPredicted RBP16.45■□□□□ 0.22
SYNE2-219ENST00000555323 USP16Q9Y5T5 823 aa16.45■□□□□ 0.22
SYNE2-219ENST00000555323 STARD3NLO95772 234 aa16.44■□□□□ 0.22
SYNE2-219ENST00000555323 DUSP27Q5VZP5 1158 aa16.44■□□□□ 0.22
SYNE2-219ENST00000555323 C8orf58Q8NAV2 365 aa16.44■□□□□ 0.22
SYNE2-219ENST00000555323 LINC00116Q8NCU8 138 aa16.44■□□□□ 0.22
SYNE2-219ENST00000555323 PRAMEF22A3QJZ6 481 aa16.43■□□□□ 0.22
SYNE2-219ENST00000555323 KRT24Q2M2I5 525 aa16.43■□□□□ 0.22
SYNE2-219ENST00000555323 AKT1S1Q96B36 256 aa16.43■□□□□ 0.22
SYNE2-219ENST00000555323 CICQ96RK0 1608 aaPredicted RBP16.43■□□□□ 0.22
SYNE2-219ENST00000555323 CNTNAP4Q9C0A0 1308 aa16.43■□□□□ 0.22
SYNE2-219ENST00000555323 INTS5Q6P9B9 1019 aaKnown RBP16.42■□□□□ 0.22
SYNE2-219ENST00000555323 VAMP4O75379 141 aa16.41■□□□□ 0.22
SYNE2-219ENST00000555323 EXOSC9Q06265 439 aaKnown RBP16.41■□□□□ 0.22
SYNE2-219ENST00000555323 TSPYL6Q8N831 410 aa16.41■□□□□ 0.22
SYNE2-219ENST00000555323 CHMP4AQ9BY43 222 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms