RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 MBIPQ9NS73 344 aa14.05□□□□□ -0.16
TDP1-211ENST00000555178 HTATSF1O43719 755 aaKnown RBP14.05□□□□□ -0.16
TDP1-211ENST00000555178 SLC39A6Q13433 755 aa14.05□□□□□ -0.16
TDP1-211ENST00000555178 DCAF5Q96JK2 942 aa14.05□□□□□ -0.16
TDP1-211ENST00000555178 PLEKHG2Q9H7P9 1386 aa14.04□□□□□ -0.16
TDP1-211ENST00000555178 E9PSI1 815 aa14.04□□□□□ -0.16
TDP1-211ENST00000555178 FANCIQ9NVI1 1328 aa14.04□□□□□ -0.16
TDP1-211ENST00000555178 MRC1P22897 1456 aa14.04□□□□□ -0.16
TDP1-211ENST00000555178 LMOD3Q0VAK6 560 aa14.03□□□□□ -0.16
TDP1-211ENST00000555178 CHL1O00533 1208 aa14.03□□□□□ -0.16
TDP1-211ENST00000555178 PRIM1P49642 420 aaKnown RBP14.03□□□□□ -0.16
TDP1-211ENST00000555178 SLC52A2Q9HAB3 445 aa14.03□□□□□ -0.16
TDP1-211ENST00000555178 TSPYL6Q8N831 410 aa14.02□□□□□ -0.16
TDP1-211ENST00000555178 CFAP44Q96MT7 982 aa14.02□□□□□ -0.16
TDP1-211ENST00000555178 PAPPAQ13219 1627 aa14.02□□□□□ -0.17
TDP1-211ENST00000555178 TAF7Q15545 349 aaPredicted RBP14.02□□□□□ -0.17
TDP1-211ENST00000555178 PIGBQ92521 554 aa14.02□□□□□ -0.17
TDP1-211ENST00000555178 ELL2O00472 640 aaPredicted RBP14.01□□□□□ -0.17
TDP1-211ENST00000555178 EXOSC9Q06265 439 aaKnown RBP14.01□□□□□ -0.17
TDP1-211ENST00000555178 TEFQ10587 303 aa14.01□□□□□ -0.17
TDP1-211ENST00000555178 C8orf58Q8NAV2 365 aa14.01□□□□□ -0.17
TDP1-211ENST00000555178 SYTL4Q96C24 671 aaPredicted RBP14.01□□□□□ -0.17
TDP1-211ENST00000555178 C5P01031 1676 aa14.01□□□□□ -0.17
TDP1-211ENST00000555178 BTAF1O14981 1849 aa14.01□□□□□ -0.17
TDP1-211ENST00000555178 IL16Q14005 1332 aa14.01□□□□□ -0.17
TDP1-211ENST00000555178 PRAMEF22A3QJZ6 481 aa14□□□□□ -0.17
TDP1-211ENST00000555178 CABP4P57796 275 aa14□□□□□ -0.17
TDP1-211ENST00000555178 IFT57Q9NWB7 429 aa14□□□□□ -0.17
TDP1-211ENST00000555178 UBR2Q8IWV8 1755 aa14□□□□□ -0.17
TDP1-211ENST00000555178 KRT27Q7Z3Y8 459 aa14□□□□□ -0.17
TDP1-211ENST00000555178 TSPYL4Q9UJ04 414 aa14□□□□□ -0.17
TDP1-211ENST00000555178 ASAP1Q9ULH1 1129 aa14□□□□□ -0.17
TDP1-211ENST00000555178 BTBD11A6QL63 1104 aa13.99□□□□□ -0.17
TDP1-211ENST00000555178 HSP90AB1P08238 724 aaKnown RBP13.99□□□□□ -0.17
TDP1-211ENST00000555178 SUPT16HQ9Y5B9 1047 aaKnown RBP13.99□□□□□ -0.17
TDP1-211ENST00000555178 NHSQ6T4R5 1651 aa13.99□□□□□ -0.17
TDP1-211ENST00000555178 ERVV-2B6SEH9 535 aa13.99□□□□□ -0.17
TDP1-211ENST00000555178 GNAI1P63096 354 aa13.99□□□□□ -0.17
TDP1-211ENST00000555178 BCL9O00512 1426 aa13.99□□□□□ -0.17
TDP1-211ENST00000555178 MYH16Q9H6N6 1097 aa13.98□□□□□ -0.17
TDP1-211ENST00000555178 TCERG1O14776 1098 aaKnown RBP13.97□□□□□ -0.17
TDP1-211ENST00000555178 TMOD3Q9NYL9 352 aa13.97□□□□□ -0.17
TDP1-211ENST00000555178 KCPQ6ZWJ8 1503 aa13.97□□□□□ -0.17
TDP1-211ENST00000555178 ATG3Q9NT62 314 aa13.96□□□□□ -0.17
TDP1-211ENST00000555178 EIF4A1P60842 406 aaKnown RBP13.96□□□□□ -0.17
TDP1-211ENST00000555178 CALD1Q05682 793 aaKnown RBP13.96□□□□□ -0.17
TDP1-211ENST00000555178 ZNF790Q6PG37 636 aa13.96□□□□□ -0.17
TDP1-211ENST00000555178 ZNF496Q96IT1 587 aaPredicted RBP13.96□□□□□ -0.17
TDP1-211ENST00000555178 SLC4A9Q96Q91 983 aa13.96□□□□□ -0.17
TDP1-211ENST00000555178 RCAN3Q9UKA8 241 aa13.96□□□□□ -0.17
TDP1-211ENST00000555178 KCNQ4P56696 695 aa13.95□□□□□ -0.18
TDP1-211ENST00000555178 PTCD1O75127 700 aaKnown RBP13.95□□□□□ -0.18
TDP1-211ENST00000555178 NECTIN2Q92692 538 aa13.95□□□□□ -0.18
TDP1-211ENST00000555178 TRIM37O94972 964 aa13.94□□□□□ -0.18
TDP1-211ENST00000555178 VAMP4O75379 141 aa13.94□□□□□ -0.18
TDP1-211ENST00000555178 IRX6P78412 446 aaPredicted RBP13.94□□□□□ -0.18
TDP1-211ENST00000555178 BCL2L13Q9BXK5 485 aa13.94□□□□□ -0.18
TDP1-211ENST00000555178 HEG1Q9ULI3 1381 aa13.93□□□□□ -0.18
TDP1-211ENST00000555178 TJP1Q07157 1748 aa13.93□□□□□ -0.18
TDP1-211ENST00000555178 TNS1Q9HBL0 1735 aaKnown RBP13.93□□□□□ -0.18
TDP1-211ENST00000555178 BCAR3O75815 825 aa13.92□□□□□ -0.18
TDP1-211ENST00000555178 TWISTNBQ3B726 338 aaPredicted RBP13.92□□□□□ -0.18
TDP1-211ENST00000555178 PIP4K2AP48426 406 aaPredicted RBP13.91□□□□□ -0.18
TDP1-211ENST00000555178 USP16Q9Y5T5 823 aa13.91□□□□□ -0.18
TDP1-211ENST00000555178 MYH14Q7Z406 1995 aaKnown RBP13.91□□□□□ -0.18
TDP1-211ENST00000555178 LY75O60449 1722 aa13.91□□□□□ -0.18
TDP1-211ENST00000555178 PLIN1O60240 522 aa13.91□□□□□ -0.18
TDP1-211ENST00000555178 GIGYF1O75420 1035 aaPredicted RBP13.91□□□□□ -0.18
TDP1-211ENST00000555178 RBM42Q9BTD8 480 aaKnown RBP13.91□□□□□ -0.18
TDP1-211ENST00000555178 ANXA1P04083 346 aa13.9□□□□□ -0.18
TDP1-211ENST00000555178 FAM196AQ6ZSG2 479 aa13.9□□□□□ -0.18
TDP1-211ENST00000555178 BABAM1Q9NWV8 329 aa13.9□□□□□ -0.18
TDP1-211ENST00000555178 LAMB4A4D0S4 1761 aa13.9□□□□□ -0.18
TDP1-211ENST00000555178 TNNQ9UQP3 1299 aa13.9□□□□□ -0.18
TDP1-211ENST00000555178 GTF3C3Q9Y5Q9 886 aa13.9□□□□□ -0.18
TDP1-211ENST00000555178 TAF1LQ8IZX4 1826 aa13.89□□□□□ -0.19
TDP1-211ENST00000555178 EIF2S2P20042 333 aaKnown RBP13.89□□□□□ -0.19
TDP1-211ENST00000555178 RARSP54136 660 aaKnown RBP13.89□□□□□ -0.19
TDP1-211ENST00000555178 TTC5Q8N0Z6 440 aa13.89□□□□□ -0.19
TDP1-211ENST00000555178 SSH1Q8WYL5 1049 aa13.89□□□□□ -0.19
TDP1-211ENST00000555178 ITPK1Q13572 414 aa13.88□□□□□ -0.19
TDP1-211ENST00000555178 DNAJC10Q8IXB1 793 aa13.88□□□□□ -0.19
TDP1-211ENST00000555178 PALLDQ8WX93 1383 aa13.88□□□□□ -0.19
TDP1-211ENST00000555178 RNF123Q5XPI4 1314 aa13.88□□□□□ -0.19
TDP1-211ENST00000555178 RRP1P56182 461 aaKnown RBP13.88□□□□□ -0.19
TDP1-211ENST00000555178 PROSER3Q2NL68 480 aa13.88□□□□□ -0.19
TDP1-211ENST00000555178 BCL11BQ9C0K0 894 aaPredicted RBP13.88□□□□□ -0.19
TDP1-211ENST00000555178 SMIM5Q71RC9 77 aa13.87□□□□□ -0.19
TDP1-211ENST00000555178 FMNL2Q96PY5 1086 aa13.87□□□□□ -0.19
TDP1-211ENST00000555178 COL5A3P25940 1745 aaPredicted RBP13.87□□□□□ -0.19
TDP1-211ENST00000555178 G2E3Q7L622 706 aa13.87□□□□□ -0.19
TDP1-211ENST00000555178 PROM2Q8N271 834 aa13.86□□□□□ -0.19
TDP1-211ENST00000555178 LOC102724428A0A0B4J2F2 783 aa13.86□□□□□ -0.19
TDP1-211ENST00000555178 A1BGP04217 495 aa13.86□□□□□ -0.19
TDP1-211ENST00000555178 SIK1P57059 783 aa13.86□□□□□ -0.19
TDP1-211ENST00000555178 LRRC4BQ9NT99 713 aa13.86□□□□□ -0.19
TDP1-211ENST00000555178 FKBP8Q14318 412 aa13.85□□□□□ -0.19
TDP1-211ENST00000555178 PDIA6Q15084 440 aa13.85□□□□□ -0.19
TDP1-211ENST00000555178 C20orf194Q5TEA3 1177 aa13.85□□□□□ -0.19
TDP1-211ENST00000555178 ILDR2Q71H61 639 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms