RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 ATG3Q9NT62 314 aa14.53□□□□□ -0.08
SHMT2-215ENST00000554656 MYH14Q7Z406 1995 aaKnown RBP14.53□□□□□ -0.08
SHMT2-215ENST00000554656 VIRMAQ69YN4 1812 aaKnown RBP14.52□□□□□ -0.08
SHMT2-215ENST00000554656 C4AP0C0L4 1744 aa14.52□□□□□ -0.08
SHMT2-215ENST00000554656 SLC4A9Q96Q91 983 aa14.52□□□□□ -0.09
SHMT2-215ENST00000554656 KIF13BQ9NQT8 1826 aa14.52□□□□□ -0.09
SHMT2-215ENST00000554656 SCN11AQ9UI33 1791 aa14.52□□□□□ -0.09
SHMT2-215ENST00000554656 AEBP1Q8IUX7 1158 aa14.51□□□□□ -0.09
SHMT2-215ENST00000554656 TJP1Q07157 1748 aa14.5□□□□□ -0.09
SHMT2-215ENST00000554656 SSFA2P28290 1259 aa14.5□□□□□ -0.09
SHMT2-215ENST00000554656 CD2APQ9Y5K6 639 aa14.5□□□□□ -0.09
SHMT2-215ENST00000554656 CICQ96RK0 1608 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-215ENST00000554656 GNPATO15228 680 aa14.49□□□□□ -0.09
SHMT2-215ENST00000554656 HMGB2P26583 209 aaKnown RBP14.48□□□□□ -0.09
SHMT2-215ENST00000554656 ATP6V1AP38606 617 aa14.48□□□□□ -0.09
SHMT2-215ENST00000554656 ZNF530Q6P9A1 599 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-215ENST00000554656 MORC1Q86VD1 984 aa14.48□□□□□ -0.09
SHMT2-215ENST00000554656 N4BP2Q86UW6 1770 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-215ENST00000554656 ERVV-2B6SEH9 535 aa14.47□□□□□ -0.09
SHMT2-215ENST00000554656 AMER1Q5JTC6 1135 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-215ENST00000554656 DCAF5Q96JK2 942 aa14.47□□□□□ -0.09
SHMT2-215ENST00000554656 KIF7Q2M1P5 1343 aa14.46□□□□□ -0.09
SHMT2-215ENST00000554656 ADAMTS7Q9UKP4 1686 aa14.46□□□□□ -0.09
SHMT2-215ENST00000554656 PLEKHO1Q53GL0 409 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-215ENST00000554656 BRCA1P38398 1863 aaKnown RBP14.46□□□□□ -0.1
SHMT2-215ENST00000554656 GRIN3BO60391 1043 aa14.45□□□□□ -0.1
SHMT2-215ENST00000554656 IL13P35225 146 aa14.45□□□□□ -0.1
SHMT2-215ENST00000554656 C1QTNF8P60827 252 aa14.45□□□□□ -0.1
SHMT2-215ENST00000554656 ADCY9O60503 1353 aa14.45□□□□□ -0.1
SHMT2-215ENST00000554656 PXDNLA1KZ92 1463 aa14.44□□□□□ -0.1
SHMT2-215ENST00000554656 ATP10DQ9P241 1426 aa14.44□□□□□ -0.1
SHMT2-215ENST00000554656 HSP90AB1P08238 724 aaKnown RBP14.44□□□□□ -0.1
SHMT2-215ENST00000554656 SULT6B1Q6IMI4 303 aa14.44□□□□□ -0.1
SHMT2-215ENST00000554656 RBM42Q9BTD8 480 aaKnown RBP14.44□□□□□ -0.1
SHMT2-215ENST00000554656 WWC3Q9ULE0 1092 aa14.44□□□□□ -0.1
SHMT2-215ENST00000554656 KNSTRNQ9Y448 316 aa14.44□□□□□ -0.1
SHMT2-215ENST00000554656 MRC1P22897 1456 aa14.44□□□□□ -0.1
SHMT2-215ENST00000554656 CNTNAP4Q9C0A0 1308 aa14.43□□□□□ -0.1
SHMT2-215ENST00000554656 AMOTQ4VCS5 1084 aa14.43□□□□□ -0.1
SHMT2-215ENST00000554656 C10orf71Q711Q0 1435 aa14.42□□□□□ -0.1
SHMT2-215ENST00000554656 MMP10P09238 476 aa14.42□□□□□ -0.1
SHMT2-215ENST00000554656 CABP4P57796 275 aa14.42□□□□□ -0.1
SHMT2-215ENST00000554656 RC3H1Q5TC82 1133 aaKnown RBP14.42□□□□□ -0.1
SHMT2-215ENST00000554656 GIGYF1O75420 1035 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-215ENST00000554656 MTHFSP49914 203 aa14.41□□□□□ -0.1
SHMT2-215ENST00000554656 ARHGEF1Q92888 912 aaKnown RBP14.41□□□□□ -0.1
SHMT2-215ENST00000554656 RTCBQ9Y3I0 505 aaKnown RBP14.41□□□□□ -0.1
SHMT2-215ENST00000554656 UBR2Q8IWV8 1755 aa14.4□□□□□ -0.1
SHMT2-215ENST00000554656 COL3A1P02461 1466 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-215ENST00000554656 PER1O15534 1290 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-215ENST00000554656 PTCD1O75127 700 aaKnown RBP14.4□□□□□ -0.1
SHMT2-215ENST00000554656 RPS6KA4O75676 772 aa14.4□□□□□ -0.1
SHMT2-215ENST00000554656 C1orf141Q5JVX7 400 aa14.4□□□□□ -0.1
SHMT2-215ENST00000554656 NFATC2IPQ8NCF5 419 aa14.4□□□□□ -0.1
SHMT2-215ENST00000554656 KCPQ6ZWJ8 1503 aa14.4□□□□□ -0.1
SHMT2-215ENST00000554656 SENP3-EIF4A1A0A087X0R7 540 aa14.39□□□□□ -0.11
SHMT2-215ENST00000554656 GYS1P13807 737 aa14.39□□□□□ -0.11
SHMT2-215ENST00000554656 ADRA2BP18089 450 aa14.39□□□□□ -0.11
SHMT2-215ENST00000554656 TRAPPC3LQ5T215 181 aa14.39□□□□□ -0.11
SHMT2-215ENST00000554656 CRKLP46109 303 aaKnown RBP14.38□□□□□ -0.11
SHMT2-215ENST00000554656 ARFGEF1Q9Y6D6 1849 aa14.38□□□□□ -0.11
SHMT2-215ENST00000554656 SIPA1L3O60292 1781 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-215ENST00000554656 ZNF316A6NFI3 1004 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-215ENST00000554656 HMOX1P09601 288 aa14.37□□□□□ -0.11
SHMT2-215ENST00000554656 AKAP4Q5JQC9 854 aa14.37□□□□□ -0.11
SHMT2-215ENST00000554656 LGR6Q9HBX8 967 aa14.37□□□□□ -0.11
SHMT2-215ENST00000554656 SRP68Q9UHB9 627 aaKnown RBP14.37□□□□□ -0.11
SHMT2-215ENST00000554656 CEP350Q5VT06 3117 aa14.37□□□□□ -0.11
SHMT2-215ENST00000554656 CC2D1BQ5T0F9 858 aaKnown RBP14.36□□□□□ -0.11
SHMT2-215ENST00000554656 NLGN1Q8N2Q7 840 aa14.36□□□□□ -0.11
SHMT2-215ENST00000554656 AFDNP55196 1824 aaKnown RBP14.36□□□□□ -0.11
SHMT2-215ENST00000554656 RFC4P35249 363 aa14.35□□□□□ -0.11
SHMT2-215ENST00000554656 INTS5Q6P9B9 1019 aaKnown RBP14.35□□□□□ -0.11
SHMT2-215ENST00000554656 SLC52A2Q9HAB3 445 aa14.35□□□□□ -0.11
SHMT2-215ENST00000554656 USP42Q9H9J4 1324 aaKnown RBP14.35□□□□□ -0.11
SHMT2-215ENST00000554656 A0A0G2JLW4 131 aa14.34□□□□□ -0.11
SHMT2-215ENST00000554656 RNMTO43148 476 aaKnown RBP14.34□□□□□ -0.11
SHMT2-215ENST00000554656 DDR1Q08345 913 aa14.34□□□□□ -0.11
SHMT2-215ENST00000554656 SLC39A6Q13433 755 aa14.34□□□□□ -0.11
SHMT2-215ENST00000554656 FKBP8Q14318 412 aa14.34□□□□□ -0.11
SHMT2-215ENST00000554656 MTHFSDQ2M296 383 aaKnown RBP14.34□□□□□ -0.11
SHMT2-215ENST00000554656 DNAJC10Q8IXB1 793 aa14.34□□□□□ -0.11
SHMT2-215ENST00000554656 ZNF526Q8TF50 670 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-215ENST00000554656 NRXN2Q9P2S2 1712 aa14.34□□□□□ -0.11
SHMT2-215ENST00000554656 NPC1L1Q9UHC9 1359 aa14.34□□□□□ -0.11
SHMT2-215ENST00000554656 DPEP1P16444 411 aa14.33□□□□□ -0.12
SHMT2-215ENST00000554656 TGFB2P61812 414 aa14.33□□□□□ -0.12
SHMT2-215ENST00000554656 DIAPH1O60610 1272 aaKnown RBP14.32□□□□□ -0.12
SHMT2-215ENST00000554656 KCNA3P22001 575 aa14.32□□□□□ -0.12
SHMT2-215ENST00000554656 GPBP1L1Q9HC44 474 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-215ENST00000554656 CCDC87Q9NVE4 849 aa14.32□□□□□ -0.12
SHMT2-215ENST00000554656 PARP3Q9Y6F1 533 aa14.32□□□□□ -0.12
SHMT2-215ENST00000554656 SOS1Q07889 1333 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-215ENST00000554656 DLEC1Q9Y238 1755 aa14.32□□□□□ -0.12
SHMT2-215ENST00000554656 CYP19A1P11511 503 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-215ENST00000554656 BCS1LQ9Y276 419 aa14.31□□□□□ -0.12
SHMT2-215ENST00000554656 SBF1O95248 1867 aa14.3□□□□□ -0.12
SHMT2-215ENST00000554656 SCN7AQ01118 1682 aa14.3□□□□□ -0.12
SHMT2-215ENST00000554656 POLRMTO00411 1230 aaKnown RBP14.29□□□□□ -0.12
SHMT2-215ENST00000554656 TM4SF1P30408 202 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms