RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 IFNL2Q8IZJ0 200 aa12.15□□□□□ -0.46
TDP1-208ENST00000553989 GNPATO15228 680 aa12.14□□□□□ -0.47
TDP1-208ENST00000553989 SSFA2P28290 1259 aa12.14□□□□□ -0.47
TDP1-208ENST00000553989 ATP6V1AP38606 617 aa12.14□□□□□ -0.47
TDP1-208ENST00000553989 NKX1-1Q15270 411 aaPredicted RBP12.14□□□□□ -0.47
TDP1-208ENST00000553989 SMIM5Q71RC9 77 aa12.14□□□□□ -0.47
TDP1-208ENST00000553989 LINC00116Q8NCU8 138 aa12.14□□□□□ -0.47
TDP1-208ENST00000553989 ANKRD26Q9UPS8 1709 aa12.14□□□□□ -0.47
TDP1-208ENST00000553989 NCAPD2Q15021 1401 aa12.13□□□□□ -0.47
TDP1-208ENST00000553989 ATP10DQ9P241 1426 aa12.13□□□□□ -0.47
TDP1-208ENST00000553989 PHKG2P15735 406 aa12.13□□□□□ -0.47
TDP1-208ENST00000553989 AMIGO3Q86WK7 504 aa12.13□□□□□ -0.47
TDP1-208ENST00000553989 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.13□□□□□ -0.477e-6■■□□□ 12.8
TDP1-208ENST00000553989 POLKQ9UBT6 870 aa12.13□□□□□ -0.47
TDP1-208ENST00000553989 ASAP1Q9ULH1 1129 aa12.13□□□□□ -0.47
TDP1-208ENST00000553989 TIMELESSQ9UNS1 1208 aa12.13□□□□□ -0.47
TDP1-208ENST00000553989 IGSF1Q8N6C5 1336 aa12.12□□□□□ -0.47
TDP1-208ENST00000553989 MAP2P11137 1827 aaKnown RBP12.12□□□□□ -0.47
TDP1-208ENST00000553989 EIF4A2Q14240 407 aaKnown RBP12.12□□□□□ -0.47
TDP1-208ENST00000553989 ZNF526Q8TF50 670 aaPredicted RBP12.12□□□□□ -0.47
TDP1-208ENST00000553989 GPBP1L1Q9HC44 474 aaPredicted RBP12.12□□□□□ -0.47
TDP1-208ENST00000553989 UBR3Q6ZT12 1888 aa12.11□□□□□ -0.47
TDP1-208ENST00000553989 RBM42Q9BTD8 480 aaKnown RBP12.11□□□□□ -0.47
TDP1-208ENST00000553989 ITPK1Q13572 414 aa12.1□□□□□ -0.47
TDP1-208ENST00000553989 ATG3Q9NT62 314 aa12.1□□□□□ -0.47
TDP1-208ENST00000553989 GOLGB1Q14789 3259 aaKnown RBP12.1□□□□□ -0.47
TDP1-208ENST00000553989 HSP90AB1P08238 724 aaKnown RBP12.09□□□□□ -0.47
TDP1-208ENST00000553989 MMP10P09238 476 aa12.09□□□□□ -0.47
TDP1-208ENST00000553989 EIF4G2P78344 907 aaKnown RBP eCLIP12.09□□□□□ -0.47
TDP1-208ENST00000553989 RTCBQ9Y3I0 505 aaKnown RBP12.09□□□□□ -0.47
TDP1-208ENST00000553989 PLEKHO1Q53GL0 409 aaPredicted RBP12.08□□□□□ -0.48
TDP1-208ENST00000553989 TRAPPC3LQ5T215 181 aa12.08□□□□□ -0.48
TDP1-208ENST00000553989 ZNF530Q6P9A1 599 aaPredicted RBP12.08□□□□□ -0.48
TDP1-208ENST00000553989 PANK3Q9H999 370 aa12.08□□□□□ -0.48
TDP1-208ENST00000553989 CLSPNQ9HAW4 1339 aa12.08□□□□□ -0.48
TDP1-208ENST00000553989 CABP4P57796 275 aa12.07□□□□□ -0.48
TDP1-208ENST00000553989 C1orf141Q5JVX7 400 aa12.07□□□□□ -0.48
TDP1-208ENST00000553989 DCAF5Q96JK2 942 aa12.07□□□□□ -0.48
TDP1-208ENST00000553989 PLEKHG2Q9H7P9 1386 aa12.06□□□□□ -0.48
TDP1-208ENST00000553989 ERVV-2B6SEH9 535 aa12.06□□□□□ -0.48
TDP1-208ENST00000553989 HSPA5P11021 654 aaKnown RBP12.06□□□□□ -0.48
TDP1-208ENST00000553989 AMOTQ4VCS5 1084 aa12.06□□□□□ -0.48
TDP1-208ENST00000553989 MORC1Q86VD1 984 aa12.06□□□□□ -0.48
TDP1-208ENST00000553989 ADCY9O60503 1353 aa12.05□□□□□ -0.48
TDP1-208ENST00000553989 KDRP35968 1356 aa12.05□□□□□ -0.48
TDP1-208ENST00000553989 CICQ96RK0 1608 aaPredicted RBP12.05□□□□□ -0.48
TDP1-208ENST00000553989 RFC4P35249 363 aa12.05□□□□□ -0.48
TDP1-208ENST00000553989 MTHFSP49914 203 aa12.05□□□□□ -0.48
TDP1-208ENST00000553989 NLGN1Q8N2Q7 840 aa12.05□□□□□ -0.48
TDP1-208ENST00000553989 BCS1LQ9Y276 419 aa12.05□□□□□ -0.48
TDP1-208ENST00000553989 PTCD1O75127 700 aaKnown RBP12.04□□□□□ -0.48
TDP1-208ENST00000553989 CCDC87Q9NVE4 849 aa12.04□□□□□ -0.48
TDP1-208ENST00000553989 PARP3Q9Y6F1 533 aa12.04□□□□□ -0.48
TDP1-208ENST00000553989 CNTNAP4Q9C0A0 1308 aa12.04□□□□□ -0.48
TDP1-208ENST00000553989 KDM6AO15550 1401 aaPredicted RBP12.03□□□□□ -0.48
TDP1-208ENST00000553989 PXDNLA1KZ92 1463 aa12.03□□□□□ -0.48
TDP1-208ENST00000553989 AEBP1Q8IUX7 1158 aa12.03□□□□□ -0.48
TDP1-208ENST00000553989 ARHGEF1Q92888 912 aaKnown RBP12.03□□□□□ -0.48
TDP1-208ENST00000553989 SLC4A9Q96Q91 983 aa12.03□□□□□ -0.48
TDP1-208ENST00000553989 KNSTRNQ9Y448 316 aa12.03□□□□□ -0.48
TDP1-208ENST00000553989 A0A0G2JLW4 131 aa12.02□□□□□ -0.49
TDP1-208ENST00000553989 RPS6KA4O75676 772 aa12.02□□□□□ -0.49
TDP1-208ENST00000553989 TGFB2P61812 414 aa12.02□□□□□ -0.49
TDP1-208ENST00000553989 RC3H1Q5TC82 1133 aaKnown RBP12.02□□□□□ -0.49
TDP1-208ENST00000553989 SULT6B1Q6IMI4 303 aa12.02□□□□□ -0.49
TDP1-208ENST00000553989 C10orf71Q711Q0 1435 aa12.02□□□□□ -0.49
TDP1-208ENST00000553989 GYS1P13807 737 aa12.01□□□□□ -0.49
TDP1-208ENST00000553989 ARHGAP27Q6ZUM4 889 aa12.01□□□□□ -0.49
TDP1-208ENST00000553989 NFATC2IPQ8NCF5 419 aa12.01□□□□□ -0.49
TDP1-208ENST00000553989 COL5A3P25940 1745 aaPredicted RBP12□□□□□ -0.49
TDP1-208ENST00000553989 N4BP2Q86UW6 1770 aaPredicted RBP12□□□□□ -0.49
TDP1-208ENST00000553989 FCHSD2O94868 740 aa12□□□□□ -0.49
TDP1-208ENST00000553989 DPEP1P16444 411 aa12□□□□□ -0.49
TDP1-208ENST00000553989 HSPA6P17066 643 aa12□□□□□ -0.49
TDP1-208ENST00000553989 CRKLP46109 303 aaKnown RBP12□□□□□ -0.49
TDP1-208ENST00000553989 FBXO3Q9UK99 471 aa12□□□□□ -0.49
TDP1-208ENST00000553989 ZNF831Q5JPB2 1677 aa12□□□□□ -0.49
TDP1-208ENST00000553989 C4AP0C0L4 1744 aa12□□□□□ -0.49
TDP1-208ENST00000553989 KIF13BQ9NQT8 1826 aa11.98□□□□□ -0.49
TDP1-208ENST00000553989 SPDYE4A6NLX3 237 aa11.98□□□□□ -0.49
TDP1-208ENST00000553989 SRP68Q9UHB9 627 aaKnown RBP11.98□□□□□ -0.49
TDP1-208ENST00000553989 USP42Q9H9J4 1324 aaKnown RBP11.97□□□□□ -0.49
TDP1-208ENST00000553989 KIF3CO14782 793 aa11.97□□□□□ -0.49
TDP1-208ENST00000553989 ZPR1O75312 459 aa11.97□□□□□ -0.49
TDP1-208ENST00000553989 IL13P35225 146 aa11.97□□□□□ -0.49
TDP1-208ENST00000553989 AKAP4Q5JQC9 854 aa11.97□□□□□ -0.49
TDP1-208ENST00000553989 KIAA1551Q9HCM1 1747 aa11.97□□□□□ -0.49
TDP1-208ENST00000553989 HMOX1P09601 288 aa11.96□□□□□ -0.49
TDP1-208ENST00000553989 PIM2Q9P1W9 311 aa11.96□□□□□ -0.49
TDP1-208ENST00000553989 DALRD3Q5D0E6 543 aaKnown RBP11.95□□□□□ -0.5
TDP1-208ENST00000553989 DNAJC10Q8IXB1 793 aa11.95□□□□□ -0.5
TDP1-208ENST00000553989 C16orf71Q8IYS4 520 aaPredicted RBP11.95□□□□□ -0.5
TDP1-208ENST00000553989 SLC52A2Q9HAB3 445 aa11.95□□□□□ -0.5
TDP1-208ENST00000553989 MYH14Q7Z406 1995 aaKnown RBP11.95□□□□□ -0.5
TDP1-208ENST00000553989 TJP1Q07157 1748 aa11.94□□□□□ -0.5
TDP1-208ENST00000553989 DDR1Q08345 913 aa11.94□□□□□ -0.5
TDP1-208ENST00000553989 SLC39A6Q13433 755 aa11.94□□□□□ -0.5
TDP1-208ENST00000553989 CNGB1Q14028 1251 aaPredicted RBP11.94□□□□□ -0.5
TDP1-208ENST00000553989 C9orf131Q5VYM1 1079 aa11.94□□□□□ -0.5
TDP1-208ENST00000553989 USPL1Q5W0Q7 1092 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms