RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 ZSCAN10Q96SZ4 725 aaPredicted RBP6.82□□□□□ -1.32
VRK1-202ENST00000553683 DNAAF2Q9NVR5 837 aaKnown RBP6.82□□□□□ -1.32
VRK1-202ENST00000553683 DYRK1BQ9Y463 629 aa6.82□□□□□ -1.32
VRK1-202ENST00000553683 FAM196BA6NMK8 535 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 SOBPA7XYQ1 873 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 CDK2AP1O14519 115 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 PPFIA3O75145 1194 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 WFS1O76024 890 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 CLDN10P78369 228 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 GNASQ5JWF2 1037 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 CFAP70Q5T0N1 1121 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 KANK4Q5T7N3 995 aaPredicted RBP6.81□□□□□ -1.32
VRK1-202ENST00000553683 LCE2AQ5TA79 106 aaPredicted RBP6.81□□□□□ -1.32
VRK1-202ENST00000553683 NBPF10Q6P3W6 841 aaKnown RBP6.81□□□□□ -1.32
VRK1-202ENST00000553683 TAS1R3Q7RTX0 852 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 OGFOD1Q8N543 542 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 RHBDD1Q8TEB9 315 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 IRF7Q92985 503 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 VRTNQ9H8Y1 702 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 RAB6BQ9NRW1 208 aa6.81□□□□□ -1.32
VRK1-202ENST00000553683 SENP3-EIF4A1A0A087X0R7 540 aa6.8□□□□□ -1.32
VRK1-202ENST00000553683 A6NJY4 79 aa6.8□□□□□ -1.32
VRK1-202ENST00000553683 LMOD1P29536 600 aaPredicted RBP6.8□□□□□ -1.32
VRK1-202ENST00000553683 TLR1Q15399 786 aa6.8□□□□□ -1.32
VRK1-202ENST00000553683 CCDC102BQ68D86 513 aa6.8□□□□□ -1.32
VRK1-202ENST00000553683 LARP1Q6PKG0 1096 aaKnown RBP6.8□□□□□ -1.32
VRK1-202ENST00000553683 PRICKLE2Q7Z3G6 844 aa6.8□□□□□ -1.32
VRK1-202ENST00000553683 CCDC155Q8N6L0 562 aa6.8□□□□□ -1.32
VRK1-202ENST00000553683 RBM19Q9Y4C8 960 aaKnown RBP6.8□□□□□ -1.32
VRK1-202ENST00000553683 RASA1P20936 1047 aa6.79□□□□□ -1.32
VRK1-202ENST00000553683 PSME1Q06323 249 aa6.79□□□□□ -1.32
VRK1-202ENST00000553683 TMEM214Q6NUQ4 689 aaKnown RBP6.79□□□□□ -1.32
VRK1-202ENST00000553683 CCDC97Q96F63 343 aaPredicted RBP6.79□□□□□ -1.32
VRK1-202ENST00000553683 ZNF358Q9NW07 568 aa6.79□□□□□ -1.32
VRK1-202ENST00000553683 A0A1B0GTH6 734 aa6.78□□□□□ -1.32
VRK1-202ENST00000553683 DKK1O94907 266 aa6.78□□□□□ -1.32
VRK1-202ENST00000553683 ITGA6P23229 1130 aa6.78□□□□□ -1.32
VRK1-202ENST00000553683 POU4F2Q12837 409 aa6.78□□□□□ -1.32
VRK1-202ENST00000553683 LBRQ14739 615 aaKnown RBP6.78□□□□□ -1.32
VRK1-202ENST00000553683 C1orf216Q8TAB5 229 aa6.78□□□□□ -1.32
VRK1-202ENST00000553683 NIFKQ9BYG3 293 aaKnown RBP6.78□□□□□ -1.32
VRK1-202ENST00000553683 SCHIP1Q9P0W5 487 aaPredicted RBP6.78□□□□□ -1.32
VRK1-202ENST00000553683 IQSEC3Q9UPP2 1182 aaPredicted RBP6.78□□□□□ -1.32
VRK1-202ENST00000553683 H7C1W4 665 aa6.77□□□□□ -1.33
VRK1-202ENST00000553683 EPHA4P54764 986 aa6.77□□□□□ -1.33
VRK1-202ENST00000553683 FOXK2Q01167 660 aa6.77□□□□□ -1.33
VRK1-202ENST00000553683 PTK7Q13308 1070 aa6.77□□□□□ -1.33
VRK1-202ENST00000553683 ELOAQ14241 798 aaKnown RBP6.77□□□□□ -1.33
VRK1-202ENST00000553683 ZNF295-AS1Q8N0V1 137 aa6.77□□□□□ -1.33
VRK1-202ENST00000553683 TPCN2Q8NHX9 752 aa6.77□□□□□ -1.33
VRK1-202ENST00000553683 GAS2L2Q8NHY3 880 aa6.77□□□□□ -1.33
VRK1-202ENST00000553683 TIMMDC1Q9NPL8 285 aa6.77□□□□□ -1.33
VRK1-202ENST00000553683 WIPF1O43516 503 aa6.76□□□□□ -1.33
VRK1-202ENST00000553683 F11P03951 625 aa6.76□□□□□ -1.33
VRK1-202ENST00000553683 SEC13P55735 322 aa6.76□□□□□ -1.33
VRK1-202ENST00000553683 SRPK2P78362 688 aaKnown RBP6.76□□□□□ -1.33
VRK1-202ENST00000553683 C4orf17Q53FE4 359 aa6.76□□□□□ -1.33
VRK1-202ENST00000553683 TRIM22Q8IYM9 498 aa6.76□□□□□ -1.33
VRK1-202ENST00000553683 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.76□□□□□ -1.33
VRK1-202ENST00000553683 KIAA1024Q9UPX6 916 aa6.76□□□□□ -1.33
VRK1-202ENST00000553683 USP17L15C9J2P7 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L10C9JJH3 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L13C9JLJ4 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L12C9JPN9 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L11C9JVI0 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L21D6R901 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L18D6R9N7 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L22D6RA61 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L17D6RBQ6 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L19D6RCP7 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L20D6RJB6 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 USP17L24Q0WX57 530 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 POTEAQ6S8J7 498 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 ANKMY2Q8IV38 441 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 STAG2Q8N3U4 1231 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 ZDHHC3Q9NYG2 299 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 SERTAD1Q9UHV2 236 aa6.75□□□□□ -1.33
VRK1-202ENST00000553683 STAU1O95793 577 aaKnown RBP6.74□□□□□ -1.33
VRK1-202ENST00000553683 RHOQP17081 205 aa6.74□□□□□ -1.33
VRK1-202ENST00000553683 TEAD4Q15561 434 aa6.74□□□□□ -1.33
VRK1-202ENST00000553683 CRTC2Q53ET0 693 aaPredicted RBP6.74□□□□□ -1.33
VRK1-202ENST00000553683 SV2AQ7L0J3 742 aa6.74□□□□□ -1.33
VRK1-202ENST00000553683 GPC6Q9Y625 555 aaPredicted RBP6.74□□□□□ -1.33
VRK1-202ENST00000553683 PPP1R15AO75807 674 aaPredicted RBP6.73□□□□□ -1.33
VRK1-202ENST00000553683 ATG7O95352 703 aa6.73□□□□□ -1.33
VRK1-202ENST00000553683 HIRAP54198 1017 aaPredicted RBP6.73□□□□□ -1.33
VRK1-202ENST00000553683 NBPF1Q3BBV0 1214 aa6.73□□□□□ -1.33
VRK1-202ENST00000553683 PBXIP1Q96AQ6 731 aa6.73□□□□□ -1.33
VRK1-202ENST00000553683 ZNF594Q96JF6 807 aaPredicted RBP6.73□□□□□ -1.33
VRK1-202ENST00000553683 CRISPLD1Q9H336 500 aa6.73□□□□□ -1.33
VRK1-202ENST00000553683 DPYDQ12882 1025 aa6.72□□□□□ -1.33
VRK1-202ENST00000553683 FOXR1Q6PIV2 292 aa6.72□□□□□ -1.33
VRK1-202ENST00000553683 ARXQ96QS3 562 aa6.72□□□□□ -1.33
VRK1-202ENST00000553683 RFX1P22670 979 aa6.71□□□□□ -1.34
VRK1-202ENST00000553683 PSMA6P60900 246 aaKnown RBP6.71□□□□□ -1.34
VRK1-202ENST00000553683 SWI5Q1ZZU3 235 aa6.71□□□□□ -1.34
VRK1-202ENST00000553683 SLC9A9Q8IVB4 645 aa6.71□□□□□ -1.34
VRK1-202ENST00000553683 TNS4Q8IZW8 715 aa6.71□□□□□ -1.34
VRK1-202ENST00000553683 FAM200AQ8TCP9 573 aa6.71□□□□□ -1.34
VRK1-202ENST00000553683 CHMP3Q9Y3E7 222 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms