RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 ARXQ96QS3 562 aa24.69■■□□□ 1.54
SHMT2-206ENST00000553529 LGR6Q9HBX8 967 aa24.69■■□□□ 1.54
SHMT2-206ENST00000553529 AMOTQ4VCS5 1084 aa24.68■■□□□ 1.54
SHMT2-206ENST00000553529 ATP6V1AP38606 617 aa24.67■■□□□ 1.54
SHMT2-206ENST00000553529 MTHFSDQ2M296 383 aaKnown RBP24.67■■□□□ 1.54
SHMT2-206ENST00000553529 PLEKHG2Q9H7P9 1386 aa24.67■■□□□ 1.54
SHMT2-206ENST00000553529 U2SURPO15042 1029 aaKnown RBP24.66■■□□□ 1.54
SHMT2-206ENST00000553529 CABP4P57796 275 aa24.66■■□□□ 1.54
SHMT2-206ENST00000553529 C1orf141Q5JVX7 400 aa24.66■■□□□ 1.54
SHMT2-206ENST00000553529 NFATC2IPQ8NCF5 419 aa24.66■■□□□ 1.54
SHMT2-206ENST00000553529 RBM42Q9BTD8 480 aaKnown RBP24.66■■□□□ 1.54
SHMT2-206ENST00000553529 ERVV-2B6SEH9 535 aa24.65■■□□□ 1.54
SHMT2-206ENST00000553529 COL5A3P25940 1745 aaPredicted RBP24.65■■□□□ 1.54
SHMT2-206ENST00000553529 AK7Q96M32 723 aa24.65■■□□□ 1.54
SHMT2-206ENST00000553529 TJP1Q07157 1748 aa24.64■■□□□ 1.53
SHMT2-206ENST00000553529 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.63■■□□□ 1.53
SHMT2-206ENST00000553529 PPP2R1AP30153 589 aa24.63■■□□□ 1.53
SHMT2-206ENST00000553529 NLGN2Q8NFZ4 835 aa24.63■■□□□ 1.53
SHMT2-206ENST00000553529 GNPATO15228 680 aa24.62■■□□□ 1.53
SHMT2-206ENST00000553529 PTCD1O75127 700 aaKnown RBP24.62■■□□□ 1.53
SHMT2-206ENST00000553529 HSP90AB1P08238 724 aaKnown RBP24.62■■□□□ 1.53
SHMT2-206ENST00000553529 SLC16A10Q8TF71 515 aa24.62■■□□□ 1.53
SHMT2-206ENST00000553529 ADAMTS7Q9UKP4 1686 aa24.6■■□□□ 1.53
SHMT2-206ENST00000553529 SLC39A6Q13433 755 aa24.6■■□□□ 1.53
SHMT2-206ENST00000553529 AKAP4Q5JQC9 854 aa24.6■■□□□ 1.53
SHMT2-206ENST00000553529 MYH14Q7Z406 1995 aaKnown RBP24.6■■□□□ 1.53
SHMT2-206ENST00000553529 RNMTO43148 476 aaKnown RBP24.59■■□□□ 1.53
SHMT2-206ENST00000553529 MRC1P22897 1456 aa24.58■■□□□ 1.53
SHMT2-206ENST00000553529 POLD1P28340 1107 aa24.58■■□□□ 1.53
SHMT2-206ENST00000553529 PHACTR3Q96KR7 559 aa24.58■■□□□ 1.53
SHMT2-206ENST00000553529 ZNF831Q5JPB2 1677 aa24.56■■□□□ 1.52
SHMT2-206ENST00000553529 SLC52A2Q9HAB3 445 aa24.55■■□□□ 1.52
SHMT2-206ENST00000553529 KCPQ6ZWJ8 1503 aa24.55■■□□□ 1.52
SHMT2-206ENST00000553529 C4AP0C0L4 1744 aa24.55■■□□□ 1.52
SHMT2-206ENST00000553529 PRKAR2BP31323 418 aa24.54■■□□□ 1.52
SHMT2-206ENST00000553529 RSPH6AQ9H0K4 717 aa24.54■■□□□ 1.52
SHMT2-206ENST00000553529 MAP3K5Q99683 1374 aa24.54■■□□□ 1.52
SHMT2-206ENST00000553529 WWC3Q9ULE0 1092 aa24.53■■□□□ 1.52
SHMT2-206ENST00000553529 SSFA2P28290 1259 aa24.52■■□□□ 1.52
SHMT2-206ENST00000553529 UTRNP46939 3433 aa24.51■■□□□ 1.51
SHMT2-206ENST00000553529 DNAJC10Q8IXB1 793 aa24.51■■□□□ 1.51
SHMT2-206ENST00000553529 PELP1Q8IZL8 1130 aaKnown RBP24.51■■□□□ 1.51
SHMT2-206ENST00000553529 IL17REQ8NFR9 667 aa24.51■■□□□ 1.51
SHMT2-206ENST00000553529 SIPA1L3O60292 1781 aaPredicted RBP24.5■■□□□ 1.51
SHMT2-206ENST00000553529 CICQ96RK0 1608 aaPredicted RBP24.5■■□□□ 1.51
SHMT2-206ENST00000553529 YY1P25490 414 aa24.49■■□□□ 1.51
SHMT2-206ENST00000553529 CRKLP46109 303 aaKnown RBP24.49■■□□□ 1.51
SHMT2-206ENST00000553529 FLAD1Q8NFF5 587 aa24.49■■□□□ 1.51
SHMT2-206ENST00000553529 ARHGEF1Q92888 912 aaKnown RBP24.49■■□□□ 1.51
SHMT2-206ENST00000553529 UBR2Q8IWV8 1755 aa24.49■■□□□ 1.51
SHMT2-206ENST00000553529 U2AF1L5P0DN76 240 aaPredicted RBP24.48■■□□□ 1.51
SHMT2-206ENST00000553529 U2AF1Q01081 240 aaKnown RBP eCLIP24.48■■□□□ 1.51
SHMT2-206ENST00000553529 CFAP53Q96M91 514 aa24.48■■□□□ 1.51
SHMT2-206ENST00000553529 CNTNAP4Q9C0A0 1308 aa24.48■■□□□ 1.51
SHMT2-206ENST00000553529 SRP68Q9UHB9 627 aaKnown RBP24.48■■□□□ 1.51
SHMT2-206ENST00000553529 YBX3P16989 372 aaKnown RBP eCLIP24.47■■□□□ 1.519e-9■□□□□ 9.1
SHMT2-206ENST00000553529 DDX10Q13206 875 aaKnown RBP24.47■■□□□ 1.51
SHMT2-206ENST00000553529 RTCBQ9Y3I0 505 aaKnown RBP24.47■■□□□ 1.51
SHMT2-206ENST00000553529 INTS5Q6P9B9 1019 aaKnown RBP24.46■■□□□ 1.51
SHMT2-206ENST00000553529 KCNQ3O43525 872 aa24.45■■□□□ 1.5
SHMT2-206ENST00000553529 RPS6KA4O75676 772 aa24.44■■□□□ 1.5
SHMT2-206ENST00000553529 DCTN1Q14203 1278 aa24.44■■□□□ 1.5
SHMT2-206ENST00000553529 TRAPPC3LQ5T215 181 aa24.44■■□□□ 1.5
SHMT2-206ENST00000553529 GNAT3A8MTJ3 354 aa24.43■■□□□ 1.5
SHMT2-206ENST00000553529 GPR162Q16538 588 aa24.43■■□□□ 1.5
SHMT2-206ENST00000553529 RC3H1Q5TC82 1133 aaKnown RBP24.43■■□□□ 1.5
SHMT2-206ENST00000553529 MMP10P09238 476 aa24.42■■□□□ 1.5
SHMT2-206ENST00000553529 MCM10Q7L590 875 aa24.42■■□□□ 1.5
SHMT2-206ENST00000553529 GAS2L2Q8NHY3 880 aa24.42■■□□□ 1.5
SHMT2-206ENST00000553529 GOLGB1Q14789 3259 aaKnown RBP24.42■■□□□ 1.5
SHMT2-206ENST00000553529 KIAA1551Q9HCM1 1747 aa24.41■■□□□ 1.5
SHMT2-206ENST00000553529 DCAF8L1A6NGE4 600 aa24.41■■□□□ 1.5
SHMT2-206ENST00000553529 GYS1P13807 737 aa24.41■■□□□ 1.5
SHMT2-206ENST00000553529 CYP19A1P11511 503 aaPredicted RBP24.4■■□□□ 1.5
SHMT2-206ENST00000553529 ZBTB1Q9Y2K1 713 aa24.4■■□□□ 1.5
SHMT2-206ENST00000553529 ZNF496Q96IT1 587 aaPredicted RBP24.39■■□□□ 1.49
SHMT2-206ENST00000553529 NUDCQ9Y266 331 aa24.39■■□□□ 1.49
SHMT2-206ENST00000553529 CEMIPQ8WUJ3 1361 aa24.39■■□□□ 1.49
SHMT2-206ENST00000553529 RFC4P35249 363 aa24.38■■□□□ 1.49
SHMT2-206ENST00000553529 N4BP2Q86UW6 1770 aaPredicted RBP24.38■■□□□ 1.49
SHMT2-206ENST00000553529 DLG5Q8TDM6 1919 aa24.37■■□□□ 1.49
SHMT2-206ENST00000553529 PRAMEF22A3QJZ6 481 aa24.37■■□□□ 1.49
SHMT2-206ENST00000553529 FKBP8Q14318 412 aa24.37■■□□□ 1.49
SHMT2-206ENST00000553529 CCDC87Q9NVE4 849 aa24.37■■□□□ 1.49
SHMT2-206ENST00000553529 SOS1Q07889 1333 aaPredicted RBP24.36■■□□□ 1.49
SHMT2-206ENST00000553529 TEFQ10587 303 aa24.36■■□□□ 1.49
SHMT2-206ENST00000553529 USP42Q9H9J4 1324 aaKnown RBP24.35■■□□□ 1.49
SHMT2-206ENST00000553529 CD2APQ9Y5K6 639 aa24.35■■□□□ 1.49
SHMT2-206ENST00000553529 CHD4Q14839 1912 aa24.34■■□□□ 1.49
SHMT2-206ENST00000553529 FCHSD2O94868 740 aa24.34■■□□□ 1.49
SHMT2-206ENST00000553529 DDR1Q08345 913 aa24.34■■□□□ 1.49
SHMT2-206ENST00000553529 ZNF790Q6PG37 636 aa24.34■■□□□ 1.49
SHMT2-206ENST00000553529 KIF13BQ9NQT8 1826 aa24.33■■□□□ 1.49
SHMT2-206ENST00000553529 ADRA2BP18089 450 aa24.33■■□□□ 1.49
SHMT2-206ENST00000553529 HMGB2P26583 209 aaKnown RBP24.33■■□□□ 1.49
SHMT2-206ENST00000553529 CANXP27824 592 aaKnown RBP24.33■■□□□ 1.49
SHMT2-206ENST00000553529 PIP4K2AP48426 406 aaPredicted RBP24.33■■□□□ 1.49
SHMT2-206ENST00000553529 PLEKHF1Q96S99 279 aa24.33■■□□□ 1.49
SHMT2-206ENST00000553529 THUMPD2Q9BTF0 503 aaKnown RBP24.33■■□□□ 1.49
SHMT2-206ENST00000553529 PXDNLA1KZ92 1463 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms