RNA–Protein interactions for RNA: ENST00000553455.1

SYNE2-210, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2 BASIC

Gene SYNE2, Length 674 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-210ENST00000553455 ARHGEF10LQ9HCE6 1279 aa9.17□□□□□ -0.94
SYNE2-210ENST00000553455 RAB6BQ9NRW1 208 aa9.17□□□□□ -0.94
SYNE2-210ENST00000553455 TOR4AQ9NXH8 423 aa9.17□□□□□ -0.94
SYNE2-210ENST00000553455 SERTAD1Q9UHV2 236 aa9.17□□□□□ -0.94
SYNE2-210ENST00000553455 TNFRSF10AO00220 468 aa9.16□□□□□ -0.94
SYNE2-210ENST00000553455 BACH1O14867 736 aa9.16□□□□□ -0.94
SYNE2-210ENST00000553455 IL2RAP01589 272 aa9.16□□□□□ -0.94
SYNE2-210ENST00000553455 C21orf2O43822 256 aa9.15□□□□□ -0.94
SYNE2-210ENST00000553455 SMPD1P17405 629 aa9.15□□□□□ -0.94
SYNE2-210ENST00000553455 IGFBP4P22692 258 aa9.15□□□□□ -0.94
SYNE2-210ENST00000553455 CAPN12Q6ZSI9 719 aa9.15□□□□□ -0.94
SYNE2-210ENST00000553455 Q6ZVU0 165 aa9.15□□□□□ -0.94
SYNE2-210ENST00000553455 RGS22Q8NE09 1264 aa9.15□□□□□ -0.94
SYNE2-210ENST00000553455 TSPAN10Q9H1Z9 355 aaPredicted RBP9.15□□□□□ -0.94
SYNE2-210ENST00000553455 ZFAND3Q9H8U3 227 aa9.15□□□□□ -0.94
SYNE2-210ENST00000553455 HRH3Q9Y5N1 445 aa9.15□□□□□ -0.94
SYNE2-210ENST00000553455 ZIC2O95409 532 aaPredicted RBP9.14□□□□□ -0.95
SYNE2-210ENST00000553455 TIMP2P16035 220 aa9.14□□□□□ -0.95
SYNE2-210ENST00000553455 FOXK2Q01167 660 aa9.14□□□□□ -0.95
SYNE2-210ENST00000553455 MTFR1Q15390 333 aa9.14□□□□□ -0.95
SYNE2-210ENST00000553455 ESCO1Q5FWF5 840 aa9.14□□□□□ -0.95
SYNE2-210ENST00000553455 XAGE2Q96GT9 111 aa9.14□□□□□ -0.95
SYNE2-210ENST00000553455 TTC24A2A3L6 582 aaPredicted RBP9.13□□□□□ -0.95
SYNE2-210ENST00000553455 SOWAHDA6NJG2 315 aa9.13□□□□□ -0.95
SYNE2-210ENST00000553455 WDR4P57081 412 aaKnown RBP9.13□□□□□ -0.95
SYNE2-210ENST00000553455 PRR20EP86478 221 aa9.13□□□□□ -0.95
SYNE2-210ENST00000553455 PRR20CP86479 221 aa9.13□□□□□ -0.95
SYNE2-210ENST00000553455 PRR20DP86480 221 aa9.13□□□□□ -0.95
SYNE2-210ENST00000553455 PRR20BP86481 221 aa9.13□□□□□ -0.95
SYNE2-210ENST00000553455 PRR20AP86496 221 aa9.13□□□□□ -0.95
SYNE2-210ENST00000553455 CYP4X1Q8N118 509 aa9.13□□□□□ -0.95
SYNE2-210ENST00000553455 SCG3Q8WXD2 468 aaKnown RBP9.13□□□□□ -0.95
SYNE2-210ENST00000553455 MKNK1Q9BUB5 465 aa9.13□□□□□ -0.95
SYNE2-210ENST00000553455 SCHIP1Q9P0W5 487 aaPredicted RBP9.13□□□□□ -0.95
SYNE2-210ENST00000553455 SEPT3Q9UH03 358 aa9.13□□□□□ -0.95
SYNE2-210ENST00000553455 SMTNP53814 917 aa9.12□□□□□ -0.95
SYNE2-210ENST00000553455 USP3Q9Y6I4 520 aa9.12□□□□□ -0.95
SYNE2-210ENST00000553455 A0A1W2PRU2 124 aa9.11□□□□□ -0.95
SYNE2-210ENST00000553455 A6NJY4 79 aa9.11□□□□□ -0.95
SYNE2-210ENST00000553455 FOXO3O43524 673 aa9.11□□□□□ -0.95
SYNE2-210ENST00000553455 CLN3Q13286 438 aa9.11□□□□□ -0.95
SYNE2-210ENST00000553455 CCDC27Q2M243 656 aa9.11□□□□□ -0.95
SYNE2-210ENST00000553455 CNKSR1Q969H4 720 aa9.11□□□□□ -0.95
SYNE2-210ENST00000553455 AGBL1Q96MI9 1066 aa9.11□□□□□ -0.95
SYNE2-210ENST00000553455 ESYT1Q9BSJ8 1104 aa9.11□□□□□ -0.95
SYNE2-210ENST00000553455 ATAD2Q6PL18 1390 aa9.11□□□□□ -0.95
SYNE2-210ENST00000553455 PTGIRP43119 386 aa9.1□□□□□ -0.95
SYNE2-210ENST00000553455 TBCELQ5QJ74 424 aa9.1□□□□□ -0.95
SYNE2-210ENST00000553455 SLC9A9Q8IVB4 645 aa9.1□□□□□ -0.95
SYNE2-210ENST00000553455 COL26A1Q96A83 441 aa9.1□□□□□ -0.95
SYNE2-210ENST00000553455 FHDC1Q9C0D6 1143 aaPredicted RBP9.1□□□□□ -0.95
SYNE2-210ENST00000553455 EGFL7Q9UHF1 273 aa9.1□□□□□ -0.95
SYNE2-210ENST00000553455 IQSEC3Q9UPP2 1182 aaPredicted RBP9.1□□□□□ -0.95
SYNE2-210ENST00000553455 MTMR7Q9Y216 660 aa9.1□□□□□ -0.95
SYNE2-210ENST00000553455 ZNF211Q13398 564 aaPredicted RBP9.09□□□□□ -0.95
SYNE2-210ENST00000553455 TLR1Q15399 786 aa9.09□□□□□ -0.95
SYNE2-210ENST00000553455 GTF3C2Q8WUA4 911 aaPredicted RBP9.09□□□□□ -0.95
SYNE2-210ENST00000553455 HPS1Q92902 700 aa9.09□□□□□ -0.95
SYNE2-210ENST00000553455 PTCD1O75127 700 aaKnown RBP9.08□□□□□ -0.96
SYNE2-210ENST00000553455 RELBQ01201 579 aa9.08□□□□□ -0.96
SYNE2-210ENST00000553455 ZNF295-AS1Q8N0V1 137 aa9.08□□□□□ -0.96
SYNE2-210ENST00000553455 MEIOBQ8N635 442 aa9.08□□□□□ -0.96
SYNE2-210ENST00000553455 DNMT3AQ9Y6K1 912 aaPredicted RBP9.08□□□□□ -0.96
SYNE2-210ENST00000553455 CDK2AP1O14519 115 aa9.07□□□□□ -0.96
SYNE2-210ENST00000553455 PPP1R12BO60237 982 aaPredicted RBP9.07□□□□□ -0.96
SYNE2-210ENST00000553455 ABL1P00519 1130 aa9.07□□□□□ -0.96
SYNE2-210ENST00000553455 POTEAQ6S8J7 498 aa9.07□□□□□ -0.96
SYNE2-210ENST00000553455 STAG2Q8N3U4 1231 aa9.07□□□□□ -0.96
SYNE2-210ENST00000553455 C2orf49Q9BVC5 232 aaPredicted RBP9.07□□□□□ -0.96
SYNE2-210ENST00000553455 ANO2Q9NQ90 1003 aa9.07□□□□□ -0.96
SYNE2-210ENST00000553455 H3BRB1 525 aa9.06□□□□□ -0.96
SYNE2-210ENST00000553455 ICMTO60725 284 aa9.06□□□□□ -0.96
SYNE2-210ENST00000553455 CENPCQ03188 943 aa9.06□□□□□ -0.96
SYNE2-210ENST00000553455 ECM1Q16610 540 aa9.06□□□□□ -0.96
SYNE2-210ENST00000553455 CHMP7Q8WUX9 453 aaPredicted RBP9.06□□□□□ -0.96
SYNE2-210ENST00000553455 TUT1Q9H6E5 874 aaKnown RBP9.06□□□□□ -0.96
SYNE2-210ENST00000553455 ZNF395Q9H8N7 513 aaPredicted RBP9.06□□□□□ -0.96
SYNE2-210ENST00000553455 MEN1O00255 615 aa9.05□□□□□ -0.96
SYNE2-210ENST00000553455 PSMA6P60900 246 aaKnown RBP9.05□□□□□ -0.96
SYNE2-210ENST00000553455 MTMR3Q13615 1198 aa9.05□□□□□ -0.96
SYNE2-210ENST00000553455 NAA30Q147X3 362 aaPredicted RBP9.05□□□□□ -0.96
SYNE2-210ENST00000553455 FOXD4L5Q5VV16 416 aaPredicted RBP9.04□□□□□ -0.96
SYNE2-210ENST00000553455 HELQQ8TDG4 1101 aa9.04□□□□□ -0.96
SYNE2-210ENST00000553455 ZDHHC1Q8WTX9 485 aa9.04□□□□□ -0.96
SYNE2-210ENST00000553455 FOXD4L4Q8WXT5 416 aaPredicted RBP9.04□□□□□ -0.96
SYNE2-210ENST00000553455 SAP130Q9H0E3 1048 aa9.04□□□□□ -0.96
SYNE2-210ENST00000553455 NOM1Q5C9Z4 860 aaKnown RBP9.03□□□□□ -0.96
SYNE2-210ENST00000553455 SH3PXD2AQ5TCZ1 1133 aa9.03□□□□□ -0.96
SYNE2-210ENST00000553455 NBPF15Q8N660 670 aa9.03□□□□□ -0.96
SYNE2-210ENST00000553455 NLRP3Q96P20 1036 aa9.03□□□□□ -0.96
SYNE2-210ENST00000553455 EML1O00423 815 aa9.02□□□□□ -0.97
SYNE2-210ENST00000553455 SF3B2Q13435 895 aaKnown RBP9.02□□□□□ -0.97
SYNE2-210ENST00000553455 TEAD4Q15561 434 aa9.02□□□□□ -0.97
SYNE2-210ENST00000553455 DNAJC14Q6Y2X3 702 aaPredicted RBP9.02□□□□□ -0.97
SYNE2-210ENST00000553455 PPARGC1BQ86YN6 1023 aaKnown RBP9.02□□□□□ -0.97
SYNE2-210ENST00000553455 GLYCTKQ8IVS8 523 aa9.02□□□□□ -0.97
SYNE2-210ENST00000553455 VTI1AQ96AJ9 217 aa9.02□□□□□ -0.97
SYNE2-210ENST00000553455 QTRT2Q9H974 415 aaKnown RBP9.02□□□□□ -0.97
SYNE2-210ENST00000553455 BIN2Q9UBW5 565 aaPredicted RBP9.02□□□□□ -0.97
SYNE2-210ENST00000553455 HIRAP54198 1017 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms