RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 U2AF1L5P0DN76 240 aaPredicted RBP25.17■■□□□ 1.62
HDAC4-217ENST00000553145 PRKAR2BP31323 418 aa25.17■■□□□ 1.62
HDAC4-217ENST00000553145 U2AF1Q01081 240 aaKnown RBP eCLIP25.17■■□□□ 1.62
HDAC4-217ENST00000553145 NFATC2IPQ8NCF5 419 aa25.17■■□□□ 1.62
HDAC4-217ENST00000553145 RNMTO43148 476 aaKnown RBP25.16■■□□□ 1.62
HDAC4-217ENST00000553145 PTGER2P43116 358 aa25.16■■□□□ 1.62
HDAC4-217ENST00000553145 ITPK1Q13572 414 aa25.16■■□□□ 1.62
HDAC4-217ENST00000553145 PHACTR3Q96KR7 559 aa25.16■■□□□ 1.62
HDAC4-217ENST00000553145 MTFR1LQ9H019 292 aa25.16■■□□□ 1.62
HDAC4-217ENST00000553145 LINC00116Q8NCU8 138 aa25.15■■□□□ 1.62
HDAC4-217ENST00000553145 SLC4A9Q96Q91 983 aa25.15■■□□□ 1.62
HDAC4-217ENST00000553145 RALBP1Q15311 655 aa25.14■■□□□ 1.62
HDAC4-217ENST00000553145 ZNF831Q5JPB2 1677 aa25.13■■□□□ 1.61
HDAC4-217ENST00000553145 ATP6V1AP38606 617 aa25.13■■□□□ 1.61
HDAC4-217ENST00000553145 AMIGO3Q86WK7 504 aa25.13■■□□□ 1.61
HDAC4-217ENST00000553145 SGIP1Q9BQI5 828 aa25.13■■□□□ 1.61
HDAC4-217ENST00000553145 RBM42Q9BTD8 480 aaKnown RBP25.13■■□□□ 1.61
HDAC4-217ENST00000553145 SLC52A2Q9HAB3 445 aa25.13■■□□□ 1.61
HDAC4-217ENST00000553145 MAP3K5Q99683 1374 aa25.13■■□□□ 1.61
HDAC4-217ENST00000553145 COL23A1Q86Y22 540 aaPredicted RBP25.12■■□□□ 1.61
HDAC4-217ENST00000553145 GAS2L2Q8NHY3 880 aa25.12■■□□□ 1.61
HDAC4-217ENST00000553145 UBR3Q6ZT12 1888 aa25.11■■□□□ 1.61
HDAC4-217ENST00000553145 PPP1R1BQ9UD71 204 aaPredicted RBP25.11■■□□□ 1.61
HDAC4-217ENST00000553145 COL24A1Q17RW2 1714 aa25.1■■□□□ 1.61
HDAC4-217ENST00000553145 FCHSD2O94868 740 aa25.1■■□□□ 1.61
HDAC4-217ENST00000553145 SMIM5Q71RC9 77 aa25.1■■□□□ 1.61
HDAC4-217ENST00000553145 AK7Q96M32 723 aa25.1■■□□□ 1.61
HDAC4-217ENST00000553145 COL5A3P25940 1745 aaPredicted RBP25.09■■□□□ 1.61
HDAC4-217ENST00000553145 SLC16A10Q8TF71 515 aa25.09■■□□□ 1.61
HDAC4-217ENST00000553145 GNAT3A8MTJ3 354 aa25.08■■□□□ 1.61
HDAC4-217ENST00000553145 PTCD1O75127 700 aaKnown RBP25.08■■□□□ 1.61
HDAC4-217ENST00000553145 HMGB2P26583 209 aaKnown RBP25.08■■□□□ 1.61
HDAC4-217ENST00000553145 IL17REQ8NFR9 667 aa25.08■■□□□ 1.61
HDAC4-217ENST00000553145 TJP1Q07157 1748 aa25.07■■□□□ 1.6
HDAC4-217ENST00000553145 MYBBP1AQ9BQG0 1328 aaKnown RBP25.07■■□□□ 1.6
HDAC4-217ENST00000553145 CICQ96RK0 1608 aaPredicted RBP25.06■■□□□ 1.6
HDAC4-217ENST00000553145 MSH5O43196 834 aa25.06■■□□□ 1.6
HDAC4-217ENST00000553145 SLC39A6Q13433 755 aa25.06■■□□□ 1.6
HDAC4-217ENST00000553145 PHF14O94880 888 aa25.05■■□□□ 1.6
HDAC4-217ENST00000553145 KCPQ6ZWJ8 1503 aa25.05■■□□□ 1.6
HDAC4-217ENST00000553145 SIPA1L3O60292 1781 aaPredicted RBP25.05■■□□□ 1.6
HDAC4-217ENST00000553145 CEMIPQ8WUJ3 1361 aa25.04■■□□□ 1.6
HDAC4-217ENST00000553145 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.03■■□□□ 1.6
HDAC4-217ENST00000553145 GNPATO15228 680 aa25.03■■□□□ 1.6
HDAC4-217ENST00000553145 FLAD1Q8NFF5 587 aa25.03■■□□□ 1.6
HDAC4-217ENST00000553145 PRKRIP1Q9H875 184 aaPredicted RBP25.02■■□□□ 1.6
HDAC4-217ENST00000553145 UBR2Q8IWV8 1755 aa25.02■■□□□ 1.6
HDAC4-217ENST00000553145 SSFA2P28290 1259 aa25.01■■□□□ 1.59
HDAC4-217ENST00000553145 MSL1Q68DK7 614 aa25.01■■□□□ 1.59
HDAC4-217ENST00000553145 ARXQ96QS3 562 aa25.01■■□□□ 1.59
HDAC4-217ENST00000553145 PLEKHF1Q96S99 279 aa25.01■■□□□ 1.59
HDAC4-217ENST00000553145 CNTNAP4Q9C0A0 1308 aa25.01■■□□□ 1.59
HDAC4-217ENST00000553145 TEFQ10587 303 aa25■■□□□ 1.59
HDAC4-217ENST00000553145 MYH14Q7Z406 1995 aaKnown RBP25■■□□□ 1.59
HDAC4-217ENST00000553145 ZNF316A6NFI3 1004 aaPredicted RBP24.99■■□□□ 1.59
HDAC4-217ENST00000553145 RC3H1Q5TC82 1133 aaKnown RBP24.98■■□□□ 1.59
HDAC4-217ENST00000553145 FHDC1Q9C0D6 1143 aaPredicted RBP24.98■■□□□ 1.59
HDAC4-217ENST00000553145 POLD1P28340 1107 aa24.97■■□□□ 1.59
HDAC4-217ENST00000553145 MCM10Q7L590 875 aa24.97■■□□□ 1.59
HDAC4-217ENST00000553145 DNAJC10Q8IXB1 793 aa24.97■■□□□ 1.59
HDAC4-217ENST00000553145 CRKLP46109 303 aaKnown RBP24.96■■□□□ 1.59
HDAC4-217ENST00000553145 DCTN1Q14203 1278 aa24.96■■□□□ 1.59
HDAC4-217ENST00000553145 DLG5Q8TDM6 1919 aa24.96■■□□□ 1.59
HDAC4-217ENST00000553145 RTCBQ9Y3I0 505 aaKnown RBP24.95■■□□□ 1.58
HDAC4-217ENST00000553145 RPS6KA4O75676 772 aa24.94■■□□□ 1.58
HDAC4-217ENST00000553145 RTF1Q92541 710 aaKnown RBP24.94■■□□□ 1.58
HDAC4-217ENST00000553145 SYT17Q9BSW7 474 aa24.94■■□□□ 1.58
HDAC4-217ENST00000553145 C4AP0C0L4 1744 aa24.93■■□□□ 1.58
HDAC4-217ENST00000553145 ZNF790Q6PG37 636 aa24.93■■□□□ 1.58
HDAC4-217ENST00000553145 TTC5Q8N0Z6 440 aa24.93■■□□□ 1.58
HDAC4-217ENST00000553145 HTATSF1O43719 755 aaKnown RBP24.92■■□□□ 1.58
HDAC4-217ENST00000553145 NEFMP07197 916 aa24.92■■□□□ 1.58
HDAC4-217ENST00000553145 INTS5Q6P9B9 1019 aaKnown RBP24.92■■□□□ 1.58
HDAC4-217ENST00000553145 ZNF496Q96IT1 587 aaPredicted RBP24.92■■□□□ 1.58
HDAC4-217ENST00000553145 KCNQ3O43525 872 aa24.91■■□□□ 1.58
HDAC4-217ENST00000553145 CYP19A1P11511 503 aaPredicted RBP24.91■■□□□ 1.58
HDAC4-217ENST00000553145 NFE2L2Q16236 605 aa24.91■■□□□ 1.58
HDAC4-217ENST00000553145 TRAPPC3LQ5T215 181 aa24.91■■□□□ 1.58
HDAC4-217ENST00000553145 VSIG10Q8N0Z9 540 aa24.91■■□□□ 1.58
HDAC4-217ENST00000553145 ARHGEF1Q92888 912 aaKnown RBP24.91■■□□□ 1.58
HDAC4-217ENST00000553145 MAPK8IP3Q9UPT6 1336 aa24.9■■□□□ 1.58
HDAC4-217ENST00000553145 BTBD11A6QL63 1104 aa24.9■■□□□ 1.58
HDAC4-217ENST00000553145 PNNQ9H307 717 aaKnown RBP24.9■■□□□ 1.58
HDAC4-217ENST00000553145 ADRA2BP18089 450 aa24.89■■□□□ 1.58
HDAC4-217ENST00000553145 KLHL34Q8N239 644 aa24.89■■□□□ 1.58
HDAC4-217ENST00000553145 CCDC87Q9NVE4 849 aa24.89■■□□□ 1.58
HDAC4-217ENST00000553145 HEG1Q9ULI3 1381 aa24.89■■□□□ 1.57
HDAC4-217ENST00000553145 ZBTB1Q9Y2K1 713 aa24.86■■□□□ 1.57
HDAC4-217ENST00000553145 SOS1Q07889 1333 aaPredicted RBP24.86■■□□□ 1.57
HDAC4-217ENST00000553145 RFC4P35249 363 aa24.85■■□□□ 1.57
HDAC4-217ENST00000553145 WDR43Q15061 677 aaKnown RBP eCLIP24.85■■□□□ 1.57
HDAC4-217ENST00000553145 CCDC146Q8IYE0 955 aa24.85■■□□□ 1.57
HDAC4-217ENST00000553145 FMNL2Q96PY5 1086 aa24.85■■□□□ 1.57
HDAC4-217ENST00000553145 THUMPD2Q9BTF0 503 aaKnown RBP24.85■■□□□ 1.57
HDAC4-217ENST00000553145 GYS1P13807 737 aa24.84■■□□□ 1.57
HDAC4-217ENST00000553145 NLGN2Q8NFZ4 835 aa24.84■■□□□ 1.57
HDAC4-217ENST00000553145 SRP68Q9UHB9 627 aaKnown RBP24.84■■□□□ 1.57
HDAC4-217ENST00000553145 ADAMTS8Q9UP79 889 aa24.84■■□□□ 1.57
HDAC4-217ENST00000553145 TAF7Q15545 349 aaPredicted RBP24.82■■□□□ 1.56
HDAC4-217ENST00000553145 USP42Q9H9J4 1324 aaKnown RBP24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms