RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ARID5BQ14865 1188 aa10.06□□□□□ -0.8
LIMA1-210ENST00000552045 TNS4Q8IZW8 715 aa10.06□□□□□ -0.8
LIMA1-210ENST00000552045 EHBP1Q8NDI1 1231 aa10.06□□□□□ -0.8
LIMA1-210ENST00000552045 HELQQ8TDG4 1101 aa10.06□□□□□ -0.8
LIMA1-210ENST00000552045 SCG3Q8WXD2 468 aaKnown RBP10.06□□□□□ -0.8
LIMA1-210ENST00000552045 CYLDQ9NQC7 956 aa10.06□□□□□ -0.8
LIMA1-210ENST00000552045 TMPRSS4Q9NRS4 437 aa10.06□□□□□ -0.8
LIMA1-210ENST00000552045 ATAD2Q6PL18 1390 aa10.05□□□□□ -0.8
LIMA1-210ENST00000552045 A0A0G2JS52 829 aa10.05□□□□□ -0.8
LIMA1-210ENST00000552045 INHAP05111 366 aa10.05□□□□□ -0.8
LIMA1-210ENST00000552045 DHX9Q08211 1270 aaKnown RBP10.05□□□□□ -0.8
LIMA1-210ENST00000552045 ZNF326Q5BKZ1 582 aaKnown RBP10.05□□□□□ -0.8
LIMA1-210ENST00000552045 FSHRP23945 695 aa10.04□□□□□ -0.8
LIMA1-210ENST00000552045 GRM5P41594 1212 aa10.04□□□□□ -0.8
LIMA1-210ENST00000552045 RPIAP49247 311 aa10.04□□□□□ -0.8
LIMA1-210ENST00000552045 EPHA4P54764 986 aa10.04□□□□□ -0.8
LIMA1-210ENST00000552045 FBXO33Q7Z6M2 555 aa10.04□□□□□ -0.8
LIMA1-210ENST00000552045 ZSCAN29Q8IWY8 852 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-210ENST00000552045 NPR3P17342 541 aa10.03□□□□□ -0.8
LIMA1-210ENST00000552045 RC3H1Q5TC82 1133 aaKnown RBP10.03□□□□□ -0.8
LIMA1-210ENST00000552045 ZNF784Q8NCA9 323 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-210ENST00000552045 SLC4A9Q96Q91 983 aa10.03□□□□□ -0.8
LIMA1-210ENST00000552045 ETNK1Q9HBU6 452 aa10.03□□□□□ -0.8
LIMA1-210ENST00000552045 SERTAD1Q9UHV2 236 aa10.03□□□□□ -0.8
LIMA1-210ENST00000552045 FAM13AO94988 1023 aa10.02□□□□□ -0.81
LIMA1-210ENST00000552045 MPNDQ8N594 471 aa10.02□□□□□ -0.81
LIMA1-210ENST00000552045 TSPAN10Q9H1Z9 355 aaPredicted RBP10.02□□□□□ -0.81
LIMA1-210ENST00000552045 COL19A1Q14993 1142 aa10.01□□□□□ -0.81
LIMA1-210ENST00000552045 VTI1AQ96AJ9 217 aa10.01□□□□□ -0.81
LIMA1-210ENST00000552045 LILRA1O75019 489 aa10□□□□□ -0.81
LIMA1-210ENST00000552045 CD2BP2O95400 341 aaKnown RBP10□□□□□ -0.81
LIMA1-210ENST00000552045 GNRH1P01148 92 aa10□□□□□ -0.81
LIMA1-210ENST00000552045 MYT1Q01538 1121 aa10□□□□□ -0.81
LIMA1-210ENST00000552045 CYP2U1Q7Z449 544 aa10□□□□□ -0.81
LIMA1-210ENST00000552045 CCDC116Q8IYX3 515 aa10□□□□□ -0.81
LIMA1-210ENST00000552045 RGL4Q8IZJ4 473 aa10□□□□□ -0.81
LIMA1-210ENST00000552045 CHMP7Q8WUX9 453 aaPredicted RBP10□□□□□ -0.81
LIMA1-210ENST00000552045 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10□□□□□ -0.81
LIMA1-210ENST00000552045 TLL2Q9Y6L7 1015 aa10□□□□□ -0.81
LIMA1-210ENST00000552045 VAMP1P23763 118 aa9.99□□□□□ -0.81
LIMA1-210ENST00000552045 TAGLNQ01995 201 aaKnown RBP9.99□□□□□ -0.81
LIMA1-210ENST00000552045 PPP1R26Q5T8A7 1209 aaPredicted RBP9.99□□□□□ -0.81
LIMA1-210ENST00000552045 C16orf46Q6P387 395 aa9.99□□□□□ -0.81
LIMA1-210ENST00000552045 A0A1W2PRU2 124 aa9.98□□□□□ -0.81
LIMA1-210ENST00000552045 SIAH2O43255 324 aa9.98□□□□□ -0.81
LIMA1-210ENST00000552045 PPP1R12BO60237 982 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-210ENST00000552045 ADH1CP00326 375 aa9.98□□□□□ -0.81
LIMA1-210ENST00000552045 FOXK2Q01167 660 aa9.98□□□□□ -0.81
LIMA1-210ENST00000552045 ESCO1Q5FWF5 840 aa9.98□□□□□ -0.81
LIMA1-210ENST00000552045 SAP130Q9H0E3 1048 aa9.98□□□□□ -0.81
LIMA1-210ENST00000552045 SCHIP1Q9P0W5 487 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-210ENST00000552045 MPSTP25325 297 aa9.97□□□□□ -0.81
LIMA1-210ENST00000552045 NR5A1Q13285 461 aa9.97□□□□□ -0.81
LIMA1-210ENST00000552045 MTFR1Q15390 333 aa9.97□□□□□ -0.81
LIMA1-210ENST00000552045 STAG2Q8N3U4 1231 aa9.97□□□□□ -0.81
LIMA1-210ENST00000552045 RBCK1Q9BYM8 510 aa9.97□□□□□ -0.81
LIMA1-210ENST00000552045 A6NJY4 79 aa9.96□□□□□ -0.82
LIMA1-210ENST00000552045 ADD1P35611 737 aaKnown RBP9.96□□□□□ -0.82
LIMA1-210ENST00000552045 SMTNP53814 917 aa9.96□□□□□ -0.82
LIMA1-210ENST00000552045 EAPPQ56P03 285 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-210ENST00000552045 TBCELQ5QJ74 424 aa9.96□□□□□ -0.82
LIMA1-210ENST00000552045 SLC9A9Q8IVB4 645 aa9.96□□□□□ -0.82
LIMA1-210ENST00000552045 C2orf49Q9BVC5 232 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-210ENST00000552045 TCF3P15923 654 aa9.95□□□□□ -0.82
LIMA1-210ENST00000552045 LOC105371045A0A1W2PR82 267 aa9.94□□□□□ -0.82
LIMA1-210ENST00000552045 NDUFB5O43674 189 aa9.94□□□□□ -0.82
LIMA1-210ENST00000552045 LIAT1Q6ZQX7 453 aa9.94□□□□□ -0.82
LIMA1-210ENST00000552045 TMC7Q7Z402 723 aa9.94□□□□□ -0.82
LIMA1-210ENST00000552045 EMID1Q96A84 441 aaPredicted RBP9.94□□□□□ -0.82
LIMA1-210ENST00000552045 XAGE2Q96GT9 111 aa9.94□□□□□ -0.82
LIMA1-210ENST00000552045 RAB6BQ9NRW1 208 aa9.94□□□□□ -0.82
LIMA1-210ENST00000552045 NR3C2P08235 984 aa9.93□□□□□ -0.82
LIMA1-210ENST00000552045 PSMA6P60900 246 aaKnown RBP9.93□□□□□ -0.82
LIMA1-210ENST00000552045 COX20Q5RI15 118 aa9.93□□□□□ -0.82
LIMA1-210ENST00000552045 CITED4Q96RK1 184 aa9.93□□□□□ -0.82
LIMA1-210ENST00000552045 ARHGEF10LQ9HCE6 1279 aa9.93□□□□□ -0.82
LIMA1-210ENST00000552045 PGPEP1Q9NXJ5 209 aa9.93□□□□□ -0.82
LIMA1-210ENST00000552045 BRPF3Q9ULD4 1205 aa9.93□□□□□ -0.82
LIMA1-210ENST00000552045 TNFRSF10BO14763 440 aa9.92□□□□□ -0.82
LIMA1-210ENST00000552045 IL2RAP01589 272 aa9.92□□□□□ -0.82
LIMA1-210ENST00000552045 SLC19A1P41440 591 aa9.92□□□□□ -0.82
LIMA1-210ENST00000552045 EIF1AXP47813 144 aaKnown RBP9.92□□□□□ -0.82
LIMA1-210ENST00000552045 ALKBH2Q6NS38 261 aa9.92□□□□□ -0.82
LIMA1-210ENST00000552045 STIM2Q9P246 746 aa9.92□□□□□ -0.82
LIMA1-210ENST00000552045 EMILIN1Q9Y6C2 1016 aa9.92□□□□□ -0.82
LIMA1-210ENST00000552045 WNT7AO00755 349 aa9.91□□□□□ -0.82
LIMA1-210ENST00000552045 CDK2AP1O14519 115 aa9.91□□□□□ -0.82
LIMA1-210ENST00000552045 P4HBP07237 508 aaKnown RBP9.91□□□□□ -0.82
LIMA1-210ENST00000552045 BCL11AQ9H165 835 aa9.91□□□□□ -0.82
LIMA1-210ENST00000552045 QTRT2Q9H974 415 aaKnown RBP9.91□□□□□ -0.82
LIMA1-210ENST00000552045 TREHO43280 583 aa9.9□□□□□ -0.82
LIMA1-210ENST00000552045 FZD6O60353 706 aa9.9□□□□□ -0.82
LIMA1-210ENST00000552045 POTEAQ6S8J7 498 aa9.9□□□□□ -0.82
LIMA1-210ENST00000552045 CNKSR1Q969H4 720 aa9.9□□□□□ -0.82
LIMA1-210ENST00000552045 MYO19Q96H55 970 aa9.9□□□□□ -0.82
LIMA1-210ENST00000552045 MRGPRX2Q96LB1 330 aa9.9□□□□□ -0.82
LIMA1-210ENST00000552045 IQSEC3Q9UPP2 1182 aaPredicted RBP9.9□□□□□ -0.82
LIMA1-210ENST00000552045 CHMP3Q9Y3E7 222 aa9.9□□□□□ -0.82
LIMA1-210ENST00000552045 HRH3Q9Y5N1 445 aa9.9□□□□□ -0.82
LIMA1-210ENST00000552045 V9GY48 417 aaPredicted RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms