RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 SRCAPQ6ZRS2 3230 aa11.39□□□□□ -0.59
PTCH1-220ENST00000550136 ARID4AP29374 1257 aaPredicted RBP11.39□□□□□ -0.59
PTCH1-220ENST00000550136 ITFG2Q969R8 447 aa11.38□□□□□ -0.59
PTCH1-220ENST00000550136 MORC2Q9Y6X9 1032 aaPredicted RBP11.38□□□□□ -0.59
PTCH1-220ENST00000550136 ATRNO75882 1429 aa11.38□□□□□ -0.59
PTCH1-220ENST00000550136 ADAMTS13Q76LX8 1427 aa11.38□□□□□ -0.59
PTCH1-220ENST00000550136 CALR3Q96L12 384 aaKnown RBP11.38□□□□□ -0.59
PTCH1-220ENST00000550136 DDX41Q9UJV9 622 aaKnown RBP11.38□□□□□ -0.59
PTCH1-220ENST00000550136 SUFUQ9UMX1 484 aa11.38□□□□□ -0.59
PTCH1-220ENST00000550136 MST1RQ04912 1400 aa11.37□□□□□ -0.59
PTCH1-220ENST00000550136 ERICH4A6NGS2 130 aa11.37□□□□□ -0.59
PTCH1-220ENST00000550136 CALRP27797 417 aaKnown RBP11.37□□□□□ -0.59
PTCH1-220ENST00000550136 TRERF1Q96PN7 1200 aa11.37□□□□□ -0.59
PTCH1-220ENST00000550136 CXorf56Q9H5V9 222 aa11.37□□□□□ -0.59
PTCH1-220ENST00000550136 PPP1R12AO14974 1030 aaPredicted RBP11.36□□□□□ -0.59
PTCH1-220ENST00000550136 DNAJC21Q5F1R6 531 aaKnown RBP11.36□□□□□ -0.59
PTCH1-220ENST00000550136 TMX1Q9H3N1 280 aa11.36□□□□□ -0.59
PTCH1-220ENST00000550136 USP21Q9UK80 565 aa11.36□□□□□ -0.59
PTCH1-220ENST00000550136 PTCH1Q13635 1447 aa11.36□□□□□ -0.59
PTCH1-220ENST00000550136 CASQ1P31415 396 aa11.36□□□□□ -0.59
PTCH1-220ENST00000550136 MRVI1Q9Y6F6 885 aa11.36□□□□□ -0.59
PTCH1-220ENST00000550136 TRPM2O94759 1503 aa11.36□□□□□ -0.59
PTCH1-220ENST00000550136 HNRNPH2P55795 449 aaKnown RBP11.35□□□□□ -0.59
PTCH1-220ENST00000550136 LRCH2Q5VUJ6 765 aa11.35□□□□□ -0.59
PTCH1-220ENST00000550136 FNBP4Q8N3X1 1017 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-220ENST00000550136 ZNF513Q8N8E2 541 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-220ENST00000550136 CTNNA3Q9UI47 895 aa11.35□□□□□ -0.59
PTCH1-220ENST00000550136 MYO5BQ9ULV0 1848 aa11.35□□□□□ -0.59
PTCH1-220ENST00000550136 TMEM131LA2VDJ0 1609 aa11.35□□□□□ -0.59
PTCH1-220ENST00000550136 CCDC144AA2RUR9 1427 aa11.35□□□□□ -0.59
PTCH1-220ENST00000550136 KIF3CO14782 793 aa11.35□□□□□ -0.59
PTCH1-220ENST00000550136 GCC2Q8IWJ2 1684 aa11.35□□□□□ -0.59
PTCH1-220ENST00000550136 RPRD2Q5VT52 1461 aaKnown RBP11.35□□□□□ -0.59
PTCH1-220ENST00000550136 BLMP54132 1417 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-220ENST00000550136 CROCC2H7BZ55 1655 aa11.34□□□□□ -0.59
PTCH1-220ENST00000550136 ADAMTS2O95450 1211 aa11.34□□□□□ -0.59
PTCH1-220ENST00000550136 CWC22Q9HCG8 908 aaKnown RBP11.34□□□□□ -0.59
PTCH1-220ENST00000550136 LAMC1P11047 1609 aa11.34□□□□□ -0.59
PTCH1-220ENST00000550136 KLHL33A6NCF5 533 aa11.34□□□□□ -0.59
PTCH1-220ENST00000550136 GOLGA6L6A8MZA4 724 aa11.34□□□□□ -0.59
PTCH1-220ENST00000550136 CCDC91Q7Z6B0 441 aa11.34□□□□□ -0.59
PTCH1-220ENST00000550136 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.34□□□□□ -0.59
PTCH1-220ENST00000550136 PRKAR2AP13861 404 aaKnown RBP11.33□□□□□ -0.6
PTCH1-220ENST00000550136 GSCP56915 257 aaPredicted RBP11.33□□□□□ -0.6
PTCH1-220ENST00000550136 SWT1Q5T5J6 900 aaKnown RBP11.33□□□□□ -0.6
PTCH1-220ENST00000550136 GBP4Q96PP9 640 aa11.33□□□□□ -0.6
PTCH1-220ENST00000550136 CRBNQ96SW2 442 aa11.33□□□□□ -0.6
PTCH1-220ENST00000550136 CTIFO43310 598 aaKnown RBP11.33□□□□□ -0.6
PTCH1-220ENST00000550136 CYP2C19P33261 490 aa11.33□□□□□ -0.6
PTCH1-220ENST00000550136 JMYQ8N9B5 988 aa11.33□□□□□ -0.6
PTCH1-220ENST00000550136 NOL10Q9BSC4 688 aaKnown RBP11.33□□□□□ -0.6
PTCH1-220ENST00000550136 TOMM22Q9NS69 142 aa11.33□□□□□ -0.6
PTCH1-220ENST00000550136 AMOTL2Q9Y2J4 779 aa11.33□□□□□ -0.6
PTCH1-220ENST00000550136 REC8O95072 547 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 ZNF445P59923 1031 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 SYCP1Q15431 976 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 C11orf91Q3C1V1 193 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 KRT222Q8N1A0 295 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 RRP7BPQ9NSQ0 103 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 JRKLQ9Y4A0 524 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 PTPRUQ92729 1446 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 FAM177BA6PVY3 158 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 MPHOSPH10O00566 681 aaKnown RBP11.32□□□□□ -0.6
PTCH1-220ENST00000550136 MUM1L1Q5H9M0 696 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 XRN1Q8IZH2 1706 aaKnown RBP11.32□□□□□ -0.6
PTCH1-220ENST00000550136 TNPO1Q92973 898 aaKnown RBP11.32□□□□□ -0.6
PTCH1-220ENST00000550136 FAM210AQ96ND0 272 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 KNSTRNQ9Y448 316 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 TONSLQ96HA7 1378 aa11.32□□□□□ -0.6
PTCH1-220ENST00000550136 ABCC5O15440 1437 aa11.31□□□□□ -0.6
PTCH1-220ENST00000550136 TNNT1P13805 278 aa11.31□□□□□ -0.6
PTCH1-220ENST00000550136 TRDNQ13061 729 aa11.31□□□□□ -0.6
PTCH1-220ENST00000550136 CCDC96Q2M329 555 aa11.31□□□□□ -0.6
PTCH1-220ENST00000550136 MTA1Q13330 715 aa11.31□□□□□ -0.6
PTCH1-220ENST00000550136 BIRC2Q13490 618 aa11.31□□□□□ -0.6
PTCH1-220ENST00000550136 ZC3H12AQ5D1E8 599 aaKnown RBP11.31□□□□□ -0.6
PTCH1-220ENST00000550136 C20orf194Q5TEA3 1177 aa11.31□□□□□ -0.6
PTCH1-220ENST00000550136 PIBF1Q8WXW3 757 aa11.31□□□□□ -0.6
PTCH1-220ENST00000550136 NBPF3Q9H094 633 aa11.31□□□□□ -0.6
PTCH1-220ENST00000550136 NPC1L1Q9UHC9 1359 aa11.31□□□□□ -0.6
PTCH1-220ENST00000550136 UNC13BO14795 1591 aa11.3□□□□□ -0.6
PTCH1-220ENST00000550136 COL22A1Q8NFW1 1626 aaPredicted RBP11.3□□□□□ -0.6
PTCH1-220ENST00000550136 TBC1D32Q96NH3 1257 aa11.3□□□□□ -0.6
PTCH1-220ENST00000550136 DIAPH3Q9NSV4 1193 aa11.3□□□□□ -0.6
PTCH1-220ENST00000550136 ATP2B1P20020 1258 aa11.3□□□□□ -0.6
PTCH1-220ENST00000550136 GYS2P54840 703 aa11.3□□□□□ -0.6
PTCH1-220ENST00000550136 SRPK2P78362 688 aaKnown RBP11.3□□□□□ -0.6
PTCH1-220ENST00000550136 ANKRD23Q86SG2 305 aa11.3□□□□□ -0.6
PTCH1-220ENST00000550136 GOLGA6L1Q8N7Z2 621 aa11.3□□□□□ -0.6
PTCH1-220ENST00000550136 CHAF1AQ13111 956 aaPredicted RBP11.29□□□□□ -0.6
PTCH1-220ENST00000550136 FKBP5Q13451 457 aaPredicted RBP11.29□□□□□ -0.6
PTCH1-220ENST00000550136 TSGA10IPQ3SY00 556 aa11.29□□□□□ -0.6
PTCH1-220ENST00000550136 DDX17Q92841 729 aaKnown RBP11.29□□□□□ -0.6
PTCH1-220ENST00000550136 LIG1P18858 919 aa11.28□□□□□ -0.6
PTCH1-220ENST00000550136 DRC1Q96MC2 740 aa11.28□□□□□ -0.6
PTCH1-220ENST00000550136 ADGRL3Q9HAR2 1447 aa11.28□□□□□ -0.6
PTCH1-220ENST00000550136 SOS2Q07890 1332 aaPredicted RBP11.28□□□□□ -0.6
PTCH1-220ENST00000550136 BCL9LQ86UU0 1499 aa11.28□□□□□ -0.6
PTCH1-220ENST00000550136 SPHKAPQ2M3C7 1700 aa11.28□□□□□ -0.6
PTCH1-220ENST00000550136 SEC24BO95487 1268 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms