RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 C1orf141Q5JVX7 400 aa22.15■■□□□ 1.14
VPS29-207ENST00000549970 LINC00116Q8NCU8 138 aa22.15■■□□□ 1.14
VPS29-207ENST00000549970 ATP6V1AP38606 617 aa22.14■■□□□ 1.13
VPS29-207ENST00000549970 FLAD1Q8NFF5 587 aa22.14■■□□□ 1.13
VPS29-207ENST00000549970 PHF14O94880 888 aa22.13■■□□□ 1.13
VPS29-207ENST00000549970 ITPK1Q13572 414 aa22.13■■□□□ 1.13
VPS29-207ENST00000549970 AMIGO3Q86WK7 504 aa22.13■■□□□ 1.13
VPS29-207ENST00000549970 UBR3Q6ZT12 1888 aa22.13■■□□□ 1.13
VPS29-207ENST00000549970 HMOX1P09601 288 aa22.12■■□□□ 1.13
VPS29-207ENST00000549970 CABP4P57796 275 aa22.12■■□□□ 1.13
VPS29-207ENST00000549970 SMIM5Q71RC9 77 aa22.12■■□□□ 1.13
VPS29-207ENST00000549970 NPC1L1Q9UHC9 1359 aa22.12■■□□□ 1.13
VPS29-207ENST00000549970 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.1■■□□□ 1.13
VPS29-207ENST00000549970 DIAPH1O60610 1272 aaKnown RBP22.1■■□□□ 1.13
VPS29-207ENST00000549970 RBM42Q9BTD8 480 aaKnown RBP22.1■■□□□ 1.13
VPS29-207ENST00000549970 GOLGB1Q14789 3259 aaKnown RBP22.1■■□□□ 1.13
VPS29-207ENST00000549970 GNPATO15228 680 aa22.08■■□□□ 1.13
VPS29-207ENST00000549970 SSFA2P28290 1259 aa22.08■■□□□ 1.13
VPS29-207ENST00000549970 SLC4A9Q96Q91 983 aa22.08■■□□□ 1.13
VPS29-207ENST00000549970 NLGN2Q8NFZ4 835 aa22.07■■□□□ 1.12
VPS29-207ENST00000549970 AKAP4Q5JQC9 854 aa22.06■■□□□ 1.12
VPS29-207ENST00000549970 NFATC2IPQ8NCF5 419 aa22.06■■□□□ 1.12
VPS29-207ENST00000549970 SCN11AQ9UI33 1791 aa22.06■■□□□ 1.12
VPS29-207ENST00000549970 COL3A1P02461 1466 aaPredicted RBP22.05■■□□□ 1.12
VPS29-207ENST00000549970 GPR162Q16538 588 aa22.05■■□□□ 1.12
VPS29-207ENST00000549970 PELP1Q8IZL8 1130 aaKnown RBP22.04■■□□□ 1.12
VPS29-207ENST00000549970 ZNF831Q5JPB2 1677 aa22.04■■□□□ 1.12
VPS29-207ENST00000549970 U2SURPO15042 1029 aaKnown RBP22.03■■□□□ 1.12
VPS29-207ENST00000549970 PTCD1O75127 700 aaKnown RBP22.03■■□□□ 1.12
VPS29-207ENST00000549970 MTHFSDQ2M296 383 aaKnown RBP22.02■■□□□ 1.12
VPS29-207ENST00000549970 LGR6Q9HBX8 967 aa22.02■■□□□ 1.12
VPS29-207ENST00000549970 COL5A3P25940 1745 aaPredicted RBP22.02■■□□□ 1.12
VPS29-207ENST00000549970 RTCBQ9Y3I0 505 aaKnown RBP22.01■■□□□ 1.11
VPS29-207ENST00000549970 RNMTO43148 476 aaKnown RBP22■■□□□ 1.11
VPS29-207ENST00000549970 VIRMAQ69YN4 1812 aaKnown RBP22■■□□□ 1.11
VPS29-207ENST00000549970 CHD4Q14839 1912 aa22■■□□□ 1.11
VPS29-207ENST00000549970 SLC52A2Q9HAB3 445 aa21.99■■□□□ 1.11
VPS29-207ENST00000549970 CNTNAP4Q9C0A0 1308 aa21.99■■□□□ 1.11
VPS29-207ENST00000549970 TRAPPC3LQ5T215 181 aa21.98■■□□□ 1.11
VPS29-207ENST00000549970 RC3H1Q5TC82 1133 aaKnown RBP21.98■■□□□ 1.11
VPS29-207ENST00000549970 MYH14Q7Z406 1995 aaKnown RBP21.98■■□□□ 1.11
VPS29-207ENST00000549970 CFAP53Q96M91 514 aa21.97■■□□□ 1.11
VPS29-207ENST00000549970 CD2APQ9Y5K6 639 aa21.97■■□□□ 1.11
VPS29-207ENST00000549970 MRC1P22897 1456 aa21.96■■□□□ 1.11
VPS29-207ENST00000549970 TJP1Q07157 1748 aa21.95■■□□□ 1.1
VPS29-207ENST00000549970 RPS6KA4O75676 772 aa21.95■■□□□ 1.1
VPS29-207ENST00000549970 SLC39A6Q13433 755 aa21.95■■□□□ 1.1
VPS29-207ENST00000549970 ARHGEF1Q92888 912 aaKnown RBP21.95■■□□□ 1.1
VPS29-207ENST00000549970 YBX3P16989 372 aaKnown RBP eCLIP21.94■■□□□ 1.11e-6■■□□□ 11.7
VPS29-207ENST00000549970 ADRA2BP18089 450 aa21.94■■□□□ 1.1
VPS29-207ENST00000549970 CRKLP46109 303 aaKnown RBP21.94■■□□□ 1.1
VPS29-207ENST00000549970 ADAMTS7Q9UKP4 1686 aa21.94■■□□□ 1.1
VPS29-207ENST00000549970 MMP10P09238 476 aa21.93■■□□□ 1.1
VPS29-207ENST00000549970 PPP2R1AP30153 589 aa21.93■■□□□ 1.1
VPS29-207ENST00000549970 RFC4P35249 363 aa21.93■■□□□ 1.1
VPS29-207ENST00000549970 CICQ96RK0 1608 aaPredicted RBP21.92■■□□□ 1.1
VPS29-207ENST00000549970 GAS2L2Q8NHY3 880 aa21.92■■□□□ 1.1
VPS29-207ENST00000549970 C4AP0C0L4 1744 aa21.92■■□□□ 1.1
VPS29-207ENST00000549970 DNAJC10Q8IXB1 793 aa21.91■■□□□ 1.1
VPS29-207ENST00000549970 PRKAR2BP31323 418 aa21.9■■□□□ 1.1
VPS29-207ENST00000549970 NLGN1Q8N2Q7 840 aa21.9■■□□□ 1.1
VPS29-207ENST00000549970 ZNF784Q8NCA9 323 aaPredicted RBP21.9■■□□□ 1.1
VPS29-207ENST00000549970 NUDCQ9Y266 331 aa21.9■■□□□ 1.1
VPS29-207ENST00000549970 GNAT3A8MTJ3 354 aa21.89■■□□□ 1.09
VPS29-207ENST00000549970 GRIN3BO60391 1043 aa21.89■■□□□ 1.09
VPS29-207ENST00000549970 GYS1P13807 737 aa21.89■■□□□ 1.09
VPS29-207ENST00000549970 RSPH6AQ9H0K4 717 aa21.89■■□□□ 1.09
VPS29-207ENST00000549970 WWC3Q9ULE0 1092 aa21.89■■□□□ 1.09
VPS29-207ENST00000549970 KCPQ6ZWJ8 1503 aa21.89■■□□□ 1.09
VPS29-207ENST00000549970 INTS5Q6P9B9 1019 aaKnown RBP21.88■■□□□ 1.09
VPS29-207ENST00000549970 U2AF1L5P0DN76 240 aaPredicted RBP21.87■■□□□ 1.09
VPS29-207ENST00000549970 U2AF1Q01081 240 aaKnown RBP eCLIP21.87■■□□□ 1.09
VPS29-207ENST00000549970 IL17REQ8NFR9 667 aa21.87■■□□□ 1.09
VPS29-207ENST00000549970 PHACTR3Q96KR7 559 aa21.87■■□□□ 1.09
VPS29-207ENST00000549970 SRP68Q9UHB9 627 aaKnown RBP21.87■■□□□ 1.09
VPS29-207ENST00000549970 TEFQ10587 303 aa21.86■■□□□ 1.09
VPS29-207ENST00000549970 CCDC87Q9NVE4 849 aa21.86■■□□□ 1.09
VPS29-207ENST00000549970 TTC5Q8N0Z6 440 aa21.85■■□□□ 1.09
VPS29-207ENST00000549970 UBR2Q8IWV8 1755 aa21.84■■□□□ 1.09
VPS29-207ENST00000549970 USP42Q9H9J4 1324 aaKnown RBP21.84■■□□□ 1.09
VPS29-207ENST00000549970 CYP19A1P11511 503 aaPredicted RBP21.84■■□□□ 1.09
VPS29-207ENST00000549970 VSIG10Q8N0Z9 540 aa21.83■■□□□ 1.09
VPS29-207ENST00000549970 PARP3Q9Y6F1 533 aa21.83■■□□□ 1.09
VPS29-207ENST00000549970 SOS1Q07889 1333 aaPredicted RBP21.82■■□□□ 1.08
VPS29-207ENST00000549970 SIPA1L3O60292 1781 aaPredicted RBP21.82■■□□□ 1.08
VPS29-207ENST00000549970 FKBP8Q14318 412 aa21.82■■□□□ 1.08
VPS29-207ENST00000549970 ZBTB1Q9Y2K1 713 aa21.82■■□□□ 1.08
VPS29-207ENST00000549970 KIF13BQ9NQT8 1826 aa21.82■■□□□ 1.08
VPS29-207ENST00000549970 C10orf71Q711Q0 1435 aa21.81■■□□□ 1.08
VPS29-207ENST00000549970 PXDNLA1KZ92 1463 aa21.8■■□□□ 1.08
VPS29-207ENST00000549970 CEMIPQ8WUJ3 1361 aa21.8■■□□□ 1.08
VPS29-207ENST00000549970 ZPR1O75312 459 aa21.8■■□□□ 1.08
VPS29-207ENST00000549970 FCHSD2O94868 740 aa21.8■■□□□ 1.08
VPS29-207ENST00000549970 ZNF790Q6PG37 636 aa21.8■■□□□ 1.08
VPS29-207ENST00000549970 ZNF496Q96IT1 587 aaPredicted RBP21.8■■□□□ 1.08
VPS29-207ENST00000549970 N4BP2Q86UW6 1770 aaPredicted RBP21.79■■□□□ 1.08
VPS29-207ENST00000549970 COL15A1P39059 1388 aa21.79■■□□□ 1.08
VPS29-207ENST00000549970 USPL1Q5W0Q7 1092 aa21.79■■□□□ 1.08
VPS29-207ENST00000549970 KIAA1551Q9HCM1 1747 aa21.78■■□□□ 1.08
VPS29-207ENST00000549970 HEG1Q9ULI3 1381 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms