RNA–Protein interactions for RNA: ENST00000549639.1

USP44-205, Transcript of ubiquitin specific peptidase 44, human

TSL 3

Gene USP44, Length 677 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-205	ENST00000549639	ATP6V1A	P38606	617 aa		32.61	■■■□□ 2.81
USP44-205	ENST00000549639	AKAP4	Q5JQC9	854 aa		32.59	■■■□□ 2.81
USP44-205	ENST00000549639	SSFA2	P28290	1259 aa		32.58	■■■□□ 2.81
USP44-205	ENST00000549639	LINC00116	Q8NCU8	138 aa		32.57	■■■□□ 2.8
USP44-205	ENST00000549639	ZNF831	Q5JPB2	1677 aa		32.56	■■■□□ 2.8
USP44-205	ENST00000549639	HMOX1	P09601	288 aa		32.55	■■■□□ 2.8
USP44-205	ENST00000549639	ITPK1	Q13572	414 aa		32.55	■■■□□ 2.8
USP44-205	ENST00000549639	UBR3	Q6ZT12	1888 aa		32.54	■■■□□ 2.8
USP44-205	ENST00000549639	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	32.53	■■■□□ 2.8
USP44-205	ENST00000549639	CNGB1	Q14028	1251 aa	Predicted RBP	32.53	■■■□□ 2.8
USP44-205	ENST00000549639	COL3A1	P02461	1466 aa	Predicted RBP	32.53	■■■□□ 2.8
USP44-205	ENST00000549639	NFATC2IP	Q8NCF5	419 aa		32.52	■■■□□ 2.8
USP44-205	ENST00000549639	RBM42	Q9BTD8	480 aa	Known RBP	32.52	■■■□□ 2.8
USP44-205	ENST00000549639	CFAP53	Q96M91	514 aa		32.5	■■■□□ 2.79
USP44-205	ENST00000549639	SCN11A	Q9UI33	1791 aa		32.5	■■■□□ 2.79
USP44-205	ENST00000549639	GNPAT	O15228	680 aa		32.49	■■■□□ 2.79
USP44-205	ENST00000549639	PHF14	O94880	888 aa		32.49	■■■□□ 2.79
USP44-205	ENST00000549639	YY1	P25490	414 aa		32.49	■■■□□ 2.79
USP44-205	ENST00000549639	RC3H1	Q5TC82	1133 aa	Known RBP	32.49	■■■□□ 2.79
USP44-205	ENST00000549639	KLHL34	Q8N239	644 aa		32.49	■■■□□ 2.79
USP44-205	ENST00000549639	MSL1	Q68DK7	614 aa		32.48	■■■□□ 2.79
USP44-205	ENST00000549639	AMIGO3	Q86WK7	504 aa		32.47	■■■□□ 2.79
USP44-205	ENST00000549639	SLC4A9	Q96Q91	983 aa		32.47	■■■□□ 2.79
USP44-205	ENST00000549639	U2SURP	O15042	1029 aa	Known RBP	32.46	■■■□□ 2.79
USP44-205	ENST00000549639	MTHFSD	Q2M296	383 aa	Known RBP	32.46	■■■□□ 2.79
USP44-205	ENST00000549639	SLC52A2	Q9HAB3	445 aa		32.46	■■■□□ 2.79
USP44-205	ENST00000549639	RTCB	Q9Y3I0	505 aa	Known RBP	32.45	■■■□□ 2.79
USP44-205	ENST00000549639	CNTNAP4	Q9C0A0	1308 aa		32.45	■■■□□ 2.78
USP44-205	ENST00000549639	RNMT	O43148	476 aa	Known RBP	32.44	■■■□□ 2.78
USP44-205	ENST00000549639	ADRA2B	P18089	450 aa		32.43	■■■□□ 2.78
USP44-205	ENST00000549639	MRC1	P22897	1456 aa		32.42	■■■□□ 2.78
USP44-205	ENST00000549639	PTCD1	O75127	700 aa	Known RBP	32.42	■■■□□ 2.78
USP44-205	ENST00000549639	LGR6	Q9HBX8	967 aa		32.42	■■■□□ 2.78
USP44-205	ENST00000549639	NUDC	Q9Y266	331 aa		32.42	■■■□□ 2.78
USP44-205	ENST00000549639	CD2AP	Q9Y5K6	639 aa		32.42	■■■□□ 2.78
USP44-205	ENST00000549639	COL5A3	P25940	1745 aa	Predicted RBP	32.42	■■■□□ 2.78
USP44-205	ENST00000549639	TRAPPC3L	Q5T215	181 aa		32.41	■■■□□ 2.78
USP44-205	ENST00000549639	GAS2L2	Q8NHY3	880 aa		32.4	■■■□□ 2.78
USP44-205	ENST00000549639	PPP2R1A	P30153	589 aa		32.39	■■■□□ 2.78
USP44-205	ENST00000549639	GPR162	Q16538	588 aa		32.39	■■■□□ 2.78
USP44-205	ENST00000549639	SMIM5	Q71RC9	77 aa		32.39	■■■□□ 2.78
USP44-205	ENST00000549639	ADAMTS7	Q9UKP4	1686 aa		32.39	■■■□□ 2.78
USP44-205	ENST00000549639	CIC	Q96RK0	1608 aa	Predicted RBP	32.38	■■■□□ 2.77
USP44-205	ENST00000549639	RPS6KA4	O75676	772 aa		32.38	■■■□□ 2.77
USP44-205	ENST00000549639	UTRN	P46939	3433 aa		32.37	■■■□□ 2.77
USP44-205	ENST00000549639	NLGN2	Q8NFZ4	835 aa		32.37	■■■□□ 2.77
USP44-205	ENST00000549639	NLGN1	Q8N2Q7	840 aa		32.34	■■■□□ 2.77
USP44-205	ENST00000549639	VIRMA	Q69YN4	1812 aa	Known RBP	32.33	■■■□□ 2.77
USP44-205	ENST00000549639	GNAT3	A8MTJ3	354 aa		32.33	■■■□□ 2.77
USP44-205	ENST00000549639	ARHGEF1	Q92888	912 aa	Known RBP	32.33	■■■□□ 2.77
USP44-205	ENST00000549639	RFC4	P35249	363 aa		32.32	■■■□□ 2.76
USP44-205	ENST00000549639	CRKL	P46109	303 aa	Known RBP	32.32	■■■□□ 2.76
USP44-205	ENST00000549639	TJP1	Q07157	1748 aa		32.3	■■■□□ 2.76
USP44-205	ENST00000549639	RSPH6A	Q9H0K4	717 aa		32.3	■■■□□ 2.76
USP44-205	ENST00000549639	MYH14	Q7Z406	1995 aa	Known RBP	32.3	■■■□□ 2.76
USP44-205	ENST00000549639	CHD4	Q14839	1912 aa		32.3	■■■□□ 2.76
USP44-205	ENST00000549639	PRKAR2B	P31323	418 aa		32.29	■■■□□ 2.76
USP44-205	ENST00000549639	PELP1	Q8IZL8	1130 aa	Known RBP	32.29	■■■□□ 2.76
USP44-205	ENST00000549639	VSIG10	Q8N0Z9	540 aa		32.29	■■■□□ 2.76
USP44-205	ENST00000549639	GRIN3B	O60391	1043 aa		32.28	■■■□□ 2.76
USP44-205	ENST00000549639	FCHSD2	O94868	740 aa		32.28	■■■□□ 2.76
USP44-205	ENST00000549639	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.28	■■■□□ 2.76
USP44-205	ENST00000549639	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.28	■■■□□ 2.76
USP44-205	ENST00000549639	TEF	Q10587	303 aa		32.27	■■■□□ 2.76
USP44-205	ENST00000549639	SLC39A6	Q13433	755 aa		32.27	■■■□□ 2.76
USP44-205	ENST00000549639	MMP10	P09238	476 aa		32.26	■■■□□ 2.75
USP44-205	ENST00000549639	DNAJC10	Q8IXB1	793 aa		32.25	■■■□□ 2.75
USP44-205	ENST00000549639	TTC5	Q8N0Z6	440 aa		32.25	■■■□□ 2.75
USP44-205	ENST00000549639	IL17RE	Q8NFR9	667 aa		32.25	■■■□□ 2.75
USP44-205	ENST00000549639	KCP	Q6ZWJ8	1503 aa		32.25	■■■□□ 2.75
USP44-205	ENST00000549639	GYS1	P13807	737 aa		32.24	■■■□□ 2.75
USP44-205	ENST00000549639	INTS5	Q6P9B9	1019 aa	Known RBP	32.24	■■■□□ 2.75
USP44-205	ENST00000549639	PHACTR3	Q96KR7	559 aa		32.24	■■■□□ 2.75
USP44-205	ENST00000549639	CCDC87	Q9NVE4	849 aa		32.24	■■■□□ 2.75
USP44-205	ENST00000549639	GOLGB1	Q14789	3259 aa	Known RBP	32.24	■■■□□ 2.75
USP44-205	ENST00000549639	CYP19A1	P11511	503 aa	Predicted RBP	32.22	■■■□□ 2.75
USP44-205	ENST00000549639	CEMIP	Q8WUJ3	1361 aa		32.21	■■■□□ 2.75
USP44-205	ENST00000549639	C4A	P0C0L4	1744 aa		32.2	■■■□□ 2.75
USP44-205	ENST00000549639	UBR2	Q8IWV8	1755 aa		32.2	■■■□□ 2.75
USP44-205	ENST00000549639	YBX3	P16989	372 aa	Known RBP eCLIP	32.19	■■■□□ 2.74
USP44-205	ENST00000549639	USP42	Q9H9J4	1324 aa	Known RBP	32.19	■■■□□ 2.74
USP44-205	ENST00000549639	ZNF790	Q6PG37	636 aa		32.18	■■■□□ 2.74
USP44-205	ENST00000549639	PARP3	Q9Y6F1	533 aa		32.18	■■■□□ 2.74
USP44-205	ENST00000549639	TEX13A	Q9BXU3	409 aa	Predicted RBP	32.17	■■■□□ 2.74
USP44-205	ENST00000549639	STARD3NL	O95772	234 aa		32.16	■■■□□ 2.74
USP44-205	ENST00000549639	RTF1	Q92541	710 aa	Known RBP	32.16	■■■□□ 2.74
USP44-205	ENST00000549639	SOS1	Q07889	1333 aa	Predicted RBP	32.16	■■■□□ 2.74
USP44-205	ENST00000549639	SIPA1L3	O60292	1781 aa	Predicted RBP	32.16	■■■□□ 2.74
USP44-205	ENST00000549639	HTATSF1	O43719	755 aa	Known RBP	32.15	■■■□□ 2.74
USP44-205	ENST00000549639	ZPR1	O75312	459 aa		32.14	■■■□□ 2.74
USP44-205	ENST00000549639	NEFM	P07197	916 aa		32.14	■■■□□ 2.74
USP44-205	ENST00000549639	TGFB2	P61812	414 aa		32.14	■■■□□ 2.74
USP44-205	ENST00000549639	ZNF784	Q8NCA9	323 aa	Predicted RBP	32.14	■■■□□ 2.74
USP44-205	ENST00000549639	RALBP1	Q15311	655 aa		32.13	■■■□□ 2.73
USP44-205	ENST00000549639	ZNF496	Q96IT1	587 aa	Predicted RBP	32.13	■■■□□ 2.73
USP44-205	ENST00000549639	KIF13B	Q9NQT8	1826 aa		32.13	■■■□□ 2.73
USP44-205	ENST00000549639	HEG1	Q9ULI3	1381 aa		32.13	■■■□□ 2.73
USP44-205	ENST00000549639	FMNL2	Q96PY5	1086 aa		32.12	■■■□□ 2.73
USP44-205	ENST00000549639	SRP68	Q9UHB9	627 aa	Known RBP	32.12	■■■□□ 2.73
USP44-205	ENST00000549639	C10orf71	Q711Q0	1435 aa		32.11	■■■□□ 2.73

Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms