RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 MARCH10Q8NA82 808 aaPredicted RBP9.65□□□□□ -0.86
LIMA1-204ENST00000549064 DDX12PQ92771 950 aa9.65□□□□□ -0.86
LIMA1-204ENST00000549064 TMEM121BQ9BXQ6 578 aaPredicted RBP9.65□□□□□ -0.86
LIMA1-204ENST00000549064 ARHGEF28Q8N1W1 1705 aaKnown RBP9.65□□□□□ -0.87
LIMA1-204ENST00000549064 MAP3K5Q99683 1374 aa9.64□□□□□ -0.87
LIMA1-204ENST00000549064 PAPPAQ13219 1627 aa9.64□□□□□ -0.87
LIMA1-204ENST00000549064 G3V3G9 751 aa9.64□□□□□ -0.87
LIMA1-204ENST00000549064 NUDT16Q96DE0 195 aaKnown RBP9.64□□□□□ -0.87
LIMA1-204ENST00000549064 RGPD5Q99666 1765 aa9.63□□□□□ -0.87
LIMA1-204ENST00000549064 USP19O94966 1318 aa9.63□□□□□ -0.87
LIMA1-204ENST00000549064 ACEP12821 1306 aa9.63□□□□□ -0.87
LIMA1-204ENST00000549064 IRX5P78411 483 aaPredicted RBP9.63□□□□□ -0.87
LIMA1-204ENST00000549064 ABTB2Q8N961 1025 aa9.63□□□□□ -0.87
LIMA1-204ENST00000549064 FCHSD2O94868 740 aa9.62□□□□□ -0.87
LIMA1-204ENST00000549064 HIC1Q14526 733 aa9.62□□□□□ -0.87
LIMA1-204ENST00000549064 MPHOSPH9Q99550 1183 aa9.62□□□□□ -0.87
LIMA1-204ENST00000549064 ARID3AQ99856 593 aa9.62□□□□□ -0.87
LIMA1-204ENST00000549064 OCEL1Q9H607 264 aa9.62□□□□□ -0.87
LIMA1-204ENST00000549064 COL18A1P39060 1754 aa9.62□□□□□ -0.87
LIMA1-204ENST00000549064 POLR3AO14802 1390 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-204ENST00000549064 NHSQ6T4R5 1651 aa9.61□□□□□ -0.87
LIMA1-204ENST00000549064 GCP02774 474 aa9.61□□□□□ -0.87
LIMA1-204ENST00000549064 PRIM1P49642 420 aaKnown RBP9.61□□□□□ -0.87
LIMA1-204ENST00000549064 TTLL12Q14166 644 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-204ENST00000549064 ZNF827Q17R98 1081 aa9.61□□□□□ -0.87
LIMA1-204ENST00000549064 TOM1L2Q6ZVM7 507 aa9.61□□□□□ -0.87
LIMA1-204ENST00000549064 NLGN2Q8NFZ4 835 aa9.61□□□□□ -0.87
LIMA1-204ENST00000549064 OXER1Q8TDS5 423 aa9.61□□□□□ -0.87
LIMA1-204ENST00000549064 BCL9O00512 1426 aa9.61□□□□□ -0.87
LIMA1-204ENST00000549064 COL24A1Q17RW2 1714 aa9.61□□□□□ -0.87
LIMA1-204ENST00000549064 TUBGCP6Q96RT7 1819 aa9.61□□□□□ -0.87
LIMA1-204ENST00000549064 ATP10DQ9P241 1426 aa9.6□□□□□ -0.87
LIMA1-204ENST00000549064 TMEM92Q6UXU6 159 aa9.6□□□□□ -0.87
LIMA1-204ENST00000549064 BTAF1O14981 1849 aa9.6□□□□□ -0.87
LIMA1-204ENST00000549064 AATKQ6ZMQ8 1374 aa9.6□□□□□ -0.87
LIMA1-204ENST00000549064 KAT6BQ8WYB5 2073 aa9.59□□□□□ -0.87
LIMA1-204ENST00000549064 YBX3P16989 372 aaKnown RBP eCLIP9.59□□□□□ -0.87
LIMA1-204ENST00000549064 HSPA6P17066 643 aa9.59□□□□□ -0.87
LIMA1-204ENST00000549064 CDK19Q9BWU1 502 aa9.59□□□□□ -0.87
LIMA1-204ENST00000549064 C1orf115Q9H7X2 142 aa9.59□□□□□ -0.87
LIMA1-204ENST00000549064 QSER1Q2KHR3 1735 aa9.59□□□□□ -0.87
LIMA1-204ENST00000549064 NLRP13Q86W25 1043 aa9.58□□□□□ -0.88
LIMA1-204ENST00000549064 ACSBG1Q96GR2 724 aa9.58□□□□□ -0.88
LIMA1-204ENST00000549064 AXIN2Q9Y2T1 843 aa9.58□□□□□ -0.88
LIMA1-204ENST00000549064 SLIT3O75094 1523 aa9.57□□□□□ -0.88
LIMA1-204ENST00000549064 ATMINO43313 823 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-204ENST00000549064 ZNF526Q8TF50 670 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-204ENST00000549064 WDR17Q8IZU2 1322 aa9.56□□□□□ -0.88
LIMA1-204ENST00000549064 EVI5O60447 810 aa9.56□□□□□ -0.88
LIMA1-204ENST00000549064 PLCG2P16885 1265 aa9.56□□□□□ -0.88
LIMA1-204ENST00000549064 LRRC4BQ9NT99 713 aa9.56□□□□□ -0.88
LIMA1-204ENST00000549064 PIK3C2AO00443 1686 aa9.55□□□□□ -0.88
LIMA1-204ENST00000549064 TBC1D12O60347 775 aa9.55□□□□□ -0.88
LIMA1-204ENST00000549064 MS4A1P11836 297 aa9.55□□□□□ -0.88
LIMA1-204ENST00000549064 POLD1P28340 1107 aa9.55□□□□□ -0.88
LIMA1-204ENST00000549064 PTGDRQ13258 359 aa9.55□□□□□ -0.88
LIMA1-204ENST00000549064 IER5LQ5T953 404 aa9.55□□□□□ -0.88
LIMA1-204ENST00000549064 GIGYF2Q6Y7W6 1299 aaKnown RBP9.55□□□□□ -0.88
LIMA1-204ENST00000549064 PODXL2Q9NZ53 605 aa9.55□□□□□ -0.88
LIMA1-204ENST00000549064 TNS2Q63HR2 1409 aa9.55□□□□□ -0.88
LIMA1-204ENST00000549064 TRPM1Q7Z4N2 1603 aa9.54□□□□□ -0.88
LIMA1-204ENST00000549064 EXOC5O00471 708 aa9.54□□□□□ -0.88
LIMA1-204ENST00000549064 CSB-PGBD3P0DP91 1061 aa9.54□□□□□ -0.88
LIMA1-204ENST00000549064 FLIIQ13045 1269 aa9.54□□□□□ -0.88
LIMA1-204ENST00000549064 CDCA7Q9BWT1 371 aaPredicted RBP9.54□□□□□ -0.88
LIMA1-204ENST00000549064 PPIP5K1Q6PFW1 1433 aa9.54□□□□□ -0.88
LIMA1-204ENST00000549064 PNPLA7Q6ZV29 1317 aa9.54□□□□□ -0.88
LIMA1-204ENST00000549064 BRD4O60885 1362 aaPredicted RBP9.53□□□□□ -0.88
LIMA1-204ENST00000549064 GRIN3BO60391 1043 aa9.53□□□□□ -0.88
LIMA1-204ENST00000549064 ASTLQ6HA08 431 aaPredicted RBP9.53□□□□□ -0.88
LIMA1-204ENST00000549064 REPIN1Q9BWE0 567 aaKnown RBP9.53□□□□□ -0.88
LIMA1-204ENST00000549064 USP6P35125 1406 aa9.53□□□□□ -0.88
LIMA1-204ENST00000549064 CPSF1Q10570 1443 aaKnown RBP9.53□□□□□ -0.88
LIMA1-204ENST00000549064 ADCY9O60503 1353 aa9.52□□□□□ -0.88
LIMA1-204ENST00000549064 ABCC6O95255 1503 aa9.52□□□□□ -0.88
LIMA1-204ENST00000549064 KCNQ4P56696 695 aa9.52□□□□□ -0.89
LIMA1-204ENST00000549064 DCAF11Q8TEB1 546 aa9.52□□□□□ -0.89
LIMA1-204ENST00000549064 SLC16A10Q8TF71 515 aa9.52□□□□□ -0.89
LIMA1-204ENST00000549064 L3MBTL3Q96JM7 780 aaPredicted RBP9.52□□□□□ -0.89
LIMA1-204ENST00000549064 CARD10Q9BWT7 1032 aa9.52□□□□□ -0.89
LIMA1-204ENST00000549064 APBB1O00213 710 aa9.51□□□□□ -0.89
LIMA1-204ENST00000549064 EVX2Q03828 476 aa9.51□□□□□ -0.89
LIMA1-204ENST00000549064 CDHR5Q9HBB8 845 aa9.51□□□□□ -0.89
LIMA1-204ENST00000549064 GOPCQ9HD26 462 aa9.51□□□□□ -0.89
LIMA1-204ENST00000549064 QRICH2Q9H0J4 1663 aa9.51□□□□□ -0.89
LIMA1-204ENST00000549064 ARHGEF25Q86VW2 580 aa9.5□□□□□ -0.89
LIMA1-204ENST00000549064 PCMTD1Q96MG8 357 aaPredicted RBP9.5□□□□□ -0.89
LIMA1-204ENST00000549064 CCDC7Q96M83 1385 aa9.5□□□□□ -0.89
LIMA1-204ENST00000549064 LY75O60449 1722 aa9.49□□□□□ -0.89
LIMA1-204ENST00000549064 HAX1O00165 279 aa9.49□□□□□ -0.89
LIMA1-204ENST00000549064 SRPK2P78362 688 aaKnown RBP9.49□□□□□ -0.89
LIMA1-204ENST00000549064 COL13A1Q5TAT6 717 aaPredicted RBP9.49□□□□□ -0.89
LIMA1-204ENST00000549064 TFCP2L1Q9NZI6 479 aa9.49□□□□□ -0.89
LIMA1-204ENST00000549064 PCNTO95613 3336 aa9.49□□□□□ -0.89
LIMA1-204ENST00000549064 NFAT5O94916 1531 aa9.48□□□□□ -0.89
LIMA1-204ENST00000549064 MSL1Q68DK7 614 aa9.48□□□□□ -0.89
LIMA1-204ENST00000549064 DNAJC5GQ8N7S2 189 aa9.48□□□□□ -0.89
LIMA1-204ENST00000549064 WWC3Q9ULE0 1092 aa9.48□□□□□ -0.89
LIMA1-204ENST00000549064 DOT1LQ8TEK3 1739 aa9.48□□□□□ -0.89
LIMA1-204ENST00000549064 WDR90Q96KV7 1748 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms