RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 ASAP1Q9ULH1 1129 aa18.9■□□□□ 0.62
CDX2-202ENST00000548877 EMILIN1Q9Y6C2 1016 aa18.9■□□□□ 0.62
CDX2-202ENST00000548877 BRCA1P38398 1863 aaKnown RBP18.9■□□□□ 0.62
CDX2-202ENST00000548877 N4BP2Q86UW6 1770 aaPredicted RBP18.89■□□□□ 0.61
CDX2-202ENST00000548877 CDCA8Q53HL2 280 aa18.89■□□□□ 0.61
CDX2-202ENST00000548877 CARD14Q9BXL6 1004 aa18.89■□□□□ 0.61
CDX2-202ENST00000548877 WWC3Q9ULE0 1092 aa18.89■□□□□ 0.61
CDX2-202ENST00000548877 C10orf71Q711Q0 1435 aa18.89■□□□□ 0.61
CDX2-202ENST00000548877 PHKG2P15735 406 aa18.88■□□□□ 0.61
CDX2-202ENST00000548877 ATP6V1AP38606 617 aa18.88■□□□□ 0.61
CDX2-202ENST00000548877 IFNL2Q8IZJ0 200 aa18.88■□□□□ 0.61
CDX2-202ENST00000548877 NLGN1Q8N2Q7 840 aa18.88■□□□□ 0.61
CDX2-202ENST00000548877 ATG3Q9NT62 314 aa18.88■□□□□ 0.61
CDX2-202ENST00000548877 KDRP35968 1356 aa18.88■□□□□ 0.61
CDX2-202ENST00000548877 EYA1Q99502 592 aa18.87■□□□□ 0.61
CDX2-202ENST00000548877 ADRA2BP18089 450 aa18.86■□□□□ 0.61
CDX2-202ENST00000548877 RC3H1Q5TC82 1133 aaKnown RBP18.86■□□□□ 0.61
CDX2-202ENST00000548877 TRAPPC3LQ5T215 181 aa18.85■□□□□ 0.61
CDX2-202ENST00000548877 ARFGEF1Q9Y6D6 1849 aa18.85■□□□□ 0.61
CDX2-202ENST00000548877 C4AP0C0L4 1744 aa18.85■□□□□ 0.61
CDX2-202ENST00000548877 COL5A3P25940 1745 aaPredicted RBP18.85■□□□□ 0.61
CDX2-202ENST00000548877 RTCBQ9Y3I0 505 aaKnown RBP18.84■□□□□ 0.61
CDX2-202ENST00000548877 A0A0G2JLW4 131 aa18.83■□□□□ 0.6
CDX2-202ENST00000548877 SLC4A9Q96Q91 983 aa18.83■□□□□ 0.6
CDX2-202ENST00000548877 BCS1LQ9Y276 419 aa18.83■□□□□ 0.6
CDX2-202ENST00000548877 WDR90Q96KV7 1748 aa18.83■□□□□ 0.6
CDX2-202ENST00000548877 CNTNAP4Q9C0A0 1308 aa18.82■□□□□ 0.6
CDX2-202ENST00000548877 ERVV-2B6SEH9 535 aa18.82■□□□□ 0.6
CDX2-202ENST00000548877 RBM46Q8TBY0 533 aaKnown RBP18.82■□□□□ 0.6
CDX2-202ENST00000548877 ARHGEF1Q92888 912 aaKnown RBP18.82■□□□□ 0.6
CDX2-202ENST00000548877 CCDC87Q9NVE4 849 aa18.82■□□□□ 0.6
CDX2-202ENST00000548877 MYH14Q7Z406 1995 aaKnown RBP18.81■□□□□ 0.6
CDX2-202ENST00000548877 RPS6KA4O75676 772 aa18.81■□□□□ 0.6
CDX2-202ENST00000548877 GYS1P13807 737 aa18.81■□□□□ 0.6
CDX2-202ENST00000548877 DPEP1P16444 411 aa18.81■□□□□ 0.6
CDX2-202ENST00000548877 KCNA3P22001 575 aa18.81■□□□□ 0.6
CDX2-202ENST00000548877 ARHGAP27Q6ZUM4 889 aa18.81■□□□□ 0.6
CDX2-202ENST00000548877 NMRK2Q9NPI5 230 aa18.81■□□□□ 0.6
CDX2-202ENST00000548877 POLKQ9UBT6 870 aa18.81■□□□□ 0.6
CDX2-202ENST00000548877 PPM1GO15355 546 aaPredicted RBP18.8■□□□□ 0.6
CDX2-202ENST00000548877 FCHSD2O94868 740 aa18.78■□□□□ 0.6
CDX2-202ENST00000548877 FSTL1Q12841 308 aa18.78■□□□□ 0.6
CDX2-202ENST00000548877 TRIM26Q12899 539 aaPredicted RBP18.78■□□□□ 0.6
CDX2-202ENST00000548877 JMYQ8N9B5 988 aa18.78■□□□□ 0.6
CDX2-202ENST00000548877 HSP90AB1P08238 724 aaKnown RBP18.77■□□□□ 0.6
CDX2-202ENST00000548877 RFC4P35249 363 aa18.77■□□□□ 0.6
CDX2-202ENST00000548877 EIF4A2Q14240 407 aaKnown RBP18.77■□□□□ 0.6
CDX2-202ENST00000548877 DCAF5Q96JK2 942 aa18.77■□□□□ 0.6
CDX2-202ENST00000548877 PARP3Q9Y6F1 533 aa18.77■□□□□ 0.6
CDX2-202ENST00000548877 C9orf131Q5VYM1 1079 aa18.76■□□□□ 0.59
CDX2-202ENST00000548877 KLRG1Q96E93 195 aa18.76■□□□□ 0.59
CDX2-202ENST00000548877 SBF1O95248 1867 aa18.75■□□□□ 0.59
CDX2-202ENST00000548877 PIM2Q9P1W9 311 aa18.75■□□□□ 0.59
CDX2-202ENST00000548877 RBM42Q9BTD8 480 aaKnown RBP18.74■□□□□ 0.59
CDX2-202ENST00000548877 KDM6AO15550 1401 aaPredicted RBP18.74■□□□□ 0.59
CDX2-202ENST00000548877 KDM2BQ8NHM5 1336 aa18.73■□□□□ 0.59
CDX2-202ENST00000548877 TNRC6CQ9HCJ0 1690 aaKnown RBP18.73■□□□□ 0.59
CDX2-202ENST00000548877 DALRD3Q5D0E6 543 aaKnown RBP18.72■□□□□ 0.59
CDX2-202ENST00000548877 KCPQ6ZWJ8 1503 aa18.71■□□□□ 0.59
CDX2-202ENST00000548877 ADAMTS7Q9UKP4 1686 aa18.71■□□□□ 0.59
CDX2-202ENST00000548877 AMOTQ4VCS5 1084 aa18.71■□□□□ 0.59
CDX2-202ENST00000548877 PLEKHO1Q53GL0 409 aaPredicted RBP18.71■□□□□ 0.59
CDX2-202ENST00000548877 C16orf71Q8IYS4 520 aaPredicted RBP18.71■□□□□ 0.59
CDX2-202ENST00000548877 USP42Q9H9J4 1324 aaKnown RBP18.71■□□□□ 0.59
CDX2-202ENST00000548877 DDR1Q08345 913 aa18.7■□□□□ 0.58
CDX2-202ENST00000548877 ZC3H4Q9UPT8 1303 aaKnown RBP18.7■□□□□ 0.58
CDX2-202ENST00000548877 TJP1Q07157 1748 aa18.69■□□□□ 0.58
CDX2-202ENST00000548877 CRKLP46109 303 aaKnown RBP18.69■□□□□ 0.58
CDX2-202ENST00000548877 CABP4P57796 275 aa18.69■□□□□ 0.58
CDX2-202ENST00000548877 FKBP8Q14318 412 aa18.69■□□□□ 0.58
CDX2-202ENST00000548877 TM4SF1P30408 202 aa18.68■□□□□ 0.58
CDX2-202ENST00000548877 COL13A1Q5TAT6 717 aaPredicted RBP18.68■□□□□ 0.58
CDX2-202ENST00000548877 RNF181Q9P0P0 153 aa18.68■□□□□ 0.58
CDX2-202ENST00000548877 PCNTO95613 3336 aa18.68■□□□□ 0.58
CDX2-202ENST00000548877 HTRA3P83110 453 aa18.67■□□□□ 0.58
CDX2-202ENST00000548877 ZNF530Q6P9A1 599 aaPredicted RBP18.67■□□□□ 0.58
CDX2-202ENST00000548877 SRP68Q9UHB9 627 aaKnown RBP18.67■□□□□ 0.58
CDX2-202ENST00000548877 POLRMTO00411 1230 aaKnown RBP18.66■□□□□ 0.58
CDX2-202ENST00000548877 PCGF6Q9BYE7 350 aa18.66■□□□□ 0.58
CDX2-202ENST00000548877 RRAGCQ9HB90 399 aa18.66■□□□□ 0.58
CDX2-202ENST00000548877 PTCD1O75127 700 aaKnown RBP18.65■□□□□ 0.58
CDX2-202ENST00000548877 MTHFSP49914 203 aa18.65■□□□□ 0.58
CDX2-202ENST00000548877 INTS5Q6P9B9 1019 aaKnown RBP18.65■□□□□ 0.58
CDX2-202ENST00000548877 SMC1BQ8NDV3 1235 aa18.65■□□□□ 0.58
CDX2-202ENST00000548877 SCN11AQ9UI33 1791 aa18.65■□□□□ 0.58
CDX2-202ENST00000548877 NRXN2Q9P2S2 1712 aa18.64■□□□□ 0.57
CDX2-202ENST00000548877 CHRNA5P30532 468 aa18.64■□□□□ 0.57
CDX2-202ENST00000548877 NFATC2IPQ8NCF5 419 aa18.64■□□□□ 0.57
CDX2-202ENST00000548877 AFDNP55196 1824 aaKnown RBP18.63■□□□□ 0.57
CDX2-202ENST00000548877 DLEC1Q9Y238 1755 aa18.63■□□□□ 0.57
CDX2-202ENST00000548877 TNNT2P45379 298 aaPredicted RBP18.62■□□□□ 0.57
CDX2-202ENST00000548877 C1orf141Q5JVX7 400 aa18.62■□□□□ 0.57
CDX2-202ENST00000548877 TIMELESSQ9UNS1 1208 aa18.62■□□□□ 0.57
CDX2-202ENST00000548877 SOS1Q07889 1333 aaPredicted RBP18.6■□□□□ 0.57
CDX2-202ENST00000548877 GLTPD2A6NH11 291 aa18.6■□□□□ 0.57
CDX2-202ENST00000548877 AEBP1Q8IUX7 1158 aa18.6■□□□□ 0.57
CDX2-202ENST00000548877 ZPR1O75312 459 aa18.59■□□□□ 0.57
CDX2-202ENST00000548877 VEGFAP15692 232 aaPredicted RBP18.59■□□□□ 0.57
CDX2-202ENST00000548877 LMNB1P20700 586 aa18.59■□□□□ 0.57
CDX2-202ENST00000548877 PRELPP51888 382 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms