RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 C4AP0C0L4 1744 aa20.02■□□□□ 0.79
PTCH1-217ENST00000548420 MON2Q7Z3U7 1717 aa20.02■□□□□ 0.79
PTCH1-217ENST00000548420 KDM6AO15550 1401 aaPredicted RBP20.02■□□□□ 0.79
PTCH1-217ENST00000548420 HMGB2P26583 209 aaKnown RBP20.01■□□□□ 0.79
PTCH1-217ENST00000548420 VEGFBP49765 207 aa20.01■□□□□ 0.79
PTCH1-217ENST00000548420 ITGB4P16144 1822 aa20.01■□□□□ 0.79
PTCH1-217ENST00000548420 GNPATO15228 680 aa20■□□□□ 0.79
PTCH1-217ENST00000548420 ITPK1Q13572 414 aa20■□□□□ 0.79
PTCH1-217ENST00000548420 DALRD3Q5D0E6 543 aaKnown RBP20■□□□□ 0.79
PTCH1-217ENST00000548420 CCDC87Q9NVE4 849 aa20■□□□□ 0.79
PTCH1-217ENST00000548420 SIN3AQ96ST3 1273 aa19.98■□□□□ 0.79
PTCH1-217ENST00000548420 ZC3H4Q9UPT8 1303 aaKnown RBP19.98■□□□□ 0.79
PTCH1-217ENST00000548420 SBNO2Q9Y2G9 1366 aa19.97■□□□□ 0.79
PTCH1-217ENST00000548420 POTEIP0CG38 1075 aa19.97■□□□□ 0.79
PTCH1-217ENST00000548420 POTEJP0CG39 1038 aa19.97■□□□□ 0.79
PTCH1-217ENST00000548420 TMF1P82094 1093 aa19.97■□□□□ 0.79
PTCH1-217ENST00000548420 SMARCC1Q92922 1105 aaPredicted RBP19.97■□□□□ 0.79
PTCH1-217ENST00000548420 EVC2Q86UK5 1308 aa19.97■□□□□ 0.79
PTCH1-217ENST00000548420 LOC102724428A0A0B4J2F2 783 aa19.96■□□□□ 0.79
PTCH1-217ENST00000548420 SIK1P57059 783 aa19.96■□□□□ 0.79
PTCH1-217ENST00000548420 NLGN1Q8N2Q7 840 aa19.96■□□□□ 0.79
PTCH1-217ENST00000548420 PIGBQ92521 554 aa19.96■□□□□ 0.79
PTCH1-217ENST00000548420 CHRNA5P30532 468 aa19.95■□□□□ 0.78
PTCH1-217ENST00000548420 GYS1P13807 737 aa19.94■□□□□ 0.78
PTCH1-217ENST00000548420 NBPF6Q5VWK0 638 aa19.94■□□□□ 0.78
PTCH1-217ENST00000548420 USHBP1Q8N6Y0 703 aa19.94■□□□□ 0.78
PTCH1-217ENST00000548420 L3MBTL2Q969R5 705 aa19.94■□□□□ 0.78
PTCH1-217ENST00000548420 NBPF4Q96M43 638 aa19.94■□□□□ 0.78
PTCH1-217ENST00000548420 CCDC88AQ3V6T2 1871 aa19.94■□□□□ 0.78
PTCH1-217ENST00000548420 CD163L1Q9NR16 1453 aa19.93■□□□□ 0.78
PTCH1-217ENST00000548420 FBLN1P23142 703 aa19.93■□□□□ 0.78
PTCH1-217ENST00000548420 CHADLQ6NUI6 762 aa19.93■□□□□ 0.78
PTCH1-217ENST00000548420 CYP27B1O15528 508 aa19.92■□□□□ 0.78
PTCH1-217ENST00000548420 PASKQ96RG2 1323 aa19.92■□□□□ 0.78
PTCH1-217ENST00000548420 TIAM2Q8IVF5 1701 aa19.91■□□□□ 0.78
PTCH1-217ENST00000548420 HOXC9P31274 260 aa19.91■□□□□ 0.78
PTCH1-217ENST00000548420 PARP3Q9Y6F1 533 aa19.91■□□□□ 0.78
PTCH1-217ENST00000548420 LMNB1P20700 586 aa19.9■□□□□ 0.78
PTCH1-217ENST00000548420 ARHGEF1Q92888 912 aaKnown RBP19.9■□□□□ 0.78
PTCH1-217ENST00000548420 NEUROD1Q13562 356 aa19.89■□□□□ 0.77
PTCH1-217ENST00000548420 MAP3K19Q56UN5 1328 aa19.89■□□□□ 0.77
PTCH1-217ENST00000548420 TRAPPC3LQ5T215 181 aa19.89■□□□□ 0.77
PTCH1-217ENST00000548420 CGNL1Q0VF96 1302 aa19.87■□□□□ 0.77
PTCH1-217ENST00000548420 PCDH11XQ9BZA7 1347 aa19.87■□□□□ 0.77
PTCH1-217ENST00000548420 PCDH11YQ9BZA8 1340 aa19.87■□□□□ 0.77
PTCH1-217ENST00000548420 ATP6V1AP38606 617 aa19.87■□□□□ 0.77
PTCH1-217ENST00000548420 ASAP1Q9ULH1 1129 aa19.87■□□□□ 0.77
PTCH1-217ENST00000548420 DDR1Q08345 913 aa19.86■□□□□ 0.77
PTCH1-217ENST00000548420 RTCBQ9Y3I0 505 aaKnown RBP19.85■□□□□ 0.77
PTCH1-217ENST00000548420 RAPGEF4Q8WZA2 1011 aa19.84■□□□□ 0.77
PTCH1-217ENST00000548420 CFAP44Q96MT7 982 aa19.84■□□□□ 0.77
PTCH1-217ENST00000548420 NFKBIEO00221 500 aa19.83■□□□□ 0.77
PTCH1-217ENST00000548420 TATP17735 454 aaPredicted RBP19.83■□□□□ 0.77
PTCH1-217ENST00000548420 SLC4A9Q96Q91 983 aa19.83■□□□□ 0.77
PTCH1-217ENST00000548420 TMEM88BA6NKF7 163 aa19.82■□□□□ 0.76
PTCH1-217ENST00000548420 ITGBL1O95965 494 aaPredicted RBP19.82■□□□□ 0.76
PTCH1-217ENST00000548420 AMPHP49418 695 aa19.8■□□□□ 0.76
PTCH1-217ENST00000548420 MYH14Q7Z406 1995 aaKnown RBP19.8■□□□□ 0.76
PTCH1-217ENST00000548420 RASSF10A6NK89 507 aa19.79■□□□□ 0.76
PTCH1-217ENST00000548420 RFC4P35249 363 aa19.79■□□□□ 0.76
PTCH1-217ENST00000548420 MAP2K1Q02750 393 aaPredicted RBP19.79■□□□□ 0.76
PTCH1-217ENST00000548420 FKBP8Q14318 412 aa19.79■□□□□ 0.76
PTCH1-217ENST00000548420 NKX1-1Q15270 411 aaPredicted RBP19.79■□□□□ 0.76
PTCH1-217ENST00000548420 DPY19L2Q6NUT2 758 aa19.79■□□□□ 0.76
PTCH1-217ENST00000548420 PCGF6Q9BYE7 350 aa19.79■□□□□ 0.76
PTCH1-217ENST00000548420 MCOLN1Q9GZU1 580 aa19.79■□□□□ 0.76
PTCH1-217ENST00000548420 ATG3Q9NT62 314 aa19.79■□□□□ 0.76
PTCH1-217ENST00000548420 WDR33Q9C0J8 1336 aaKnown RBP19.78■□□□□ 0.76
PTCH1-217ENST00000548420 EDC4Q6P2E9 1401 aaKnown RBP19.78■□□□□ 0.76
PTCH1-217ENST00000548420 ADRA2BP18089 450 aa19.78■□□□□ 0.76
PTCH1-217ENST00000548420 SRP68Q9UHB9 627 aaKnown RBP19.78■□□□□ 0.76
PTCH1-217ENST00000548420 KDRP35968 1356 aa19.78■□□□□ 0.76
PTCH1-217ENST00000548420 RPS6KA4O75676 772 aa19.77■□□□□ 0.76
PTCH1-217ENST00000548420 DEFB115Q30KQ5 88 aa19.77■□□□□ 0.76
PTCH1-217ENST00000548420 SLC12A5Q9H2X9 1139 aa19.77■□□□□ 0.76
PTCH1-217ENST00000548420 DICER1Q9UPY3 1922 aaKnown RBP19.76■□□□□ 0.75
PTCH1-217ENST00000548420 DDNO94850 711 aaPredicted RBP19.76■□□□□ 0.75
PTCH1-217ENST00000548420 TSKSQ9UJT2 592 aa19.76■□□□□ 0.75
PTCH1-217ENST00000548420 RC3H1Q5TC82 1133 aaKnown RBP19.75■□□□□ 0.75
PTCH1-217ENST00000548420 COL5A3P25940 1745 aaPredicted RBP19.75■□□□□ 0.75
PTCH1-217ENST00000548420 POLRMTO00411 1230 aaKnown RBP19.74■□□□□ 0.75
PTCH1-217ENST00000548420 TMOD3Q9NYL9 352 aa19.74■□□□□ 0.75
PTCH1-217ENST00000548420 CASP8AP2Q9UKL3 1982 aa19.74■□□□□ 0.75
PTCH1-217ENST00000548420 LDHDQ86WU2 507 aa19.73■□□□□ 0.75
PTCH1-217ENST00000548420 THSD7BQ9C0I4 1608 aa19.73■□□□□ 0.75
PTCH1-217ENST00000548420 A0A1W2PP64 1363 aa19.72■□□□□ 0.75
PTCH1-217ENST00000548420 TONSLQ96HA7 1378 aa19.72■□□□□ 0.75
PTCH1-217ENST00000548420 TM4SF1P30408 202 aa19.72■□□□□ 0.75
PTCH1-217ENST00000548420 RRS1Q15050 365 aaKnown RBP19.72■□□□□ 0.75
PTCH1-217ENST00000548420 PRPF38BQ5VTL8 546 aaKnown RBP19.72■□□□□ 0.75
PTCH1-217ENST00000548420 DLEC1Q9Y238 1755 aa19.72■□□□□ 0.75
PTCH1-217ENST00000548420 CNTNAP4Q9C0A0 1308 aa19.72■□□□□ 0.75
PTCH1-217ENST00000548420 ERFEQ4G0M1 354 aa19.71■□□□□ 0.75
PTCH1-217ENST00000548420 HDGFL2Q7Z4V5 671 aaPredicted RBP19.71■□□□□ 0.75
PTCH1-217ENST00000548420 TMC1Q8TDI8 760 aa19.71■□□□□ 0.75
PTCH1-217ENST00000548420 CLSPNQ9HAW4 1339 aa19.71■□□□□ 0.75
PTCH1-217ENST00000548420 TAF1DQ9H5J8 278 aaPredicted RBP19.7■□□□□ 0.74
PTCH1-217ENST00000548420 USP42Q9H9J4 1324 aaKnown RBP19.7■□□□□ 0.74
PTCH1-217ENST00000548420 ZNF831Q5JPB2 1677 aa19.69■□□□□ 0.74
PTCH1-217ENST00000548420 LTBP1Q14766 1721 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms