RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 IL2RBP14784 551 aa16.98■□□□□ 0.31
PTCH1-215ENST00000547672 CCT4P50991 539 aaKnown RBP16.98■□□□□ 0.31
PTCH1-215ENST00000547672 EIF4A1P60842 406 aaKnown RBP16.98■□□□□ 0.31
PTCH1-215ENST00000547672 HDAC1Q13547 482 aaPredicted RBP16.98■□□□□ 0.31
PTCH1-215ENST00000547672 COL5A2P05997 1499 aaPredicted RBP16.98■□□□□ 0.31
PTCH1-215ENST00000547672 PCDH11XQ9BZA7 1347 aa16.97■□□□□ 0.31
PTCH1-215ENST00000547672 PCDH11YQ9BZA8 1340 aa16.97■□□□□ 0.31
PTCH1-215ENST00000547672 COL22A1Q8NFW1 1626 aaPredicted RBP16.96■□□□□ 0.31
PTCH1-215ENST00000547672 ABCA3Q99758 1704 aa16.96■□□□□ 0.31
PTCH1-215ENST00000547672 ZBTB7BO15156 539 aaPredicted RBP16.96■□□□□ 0.31
PTCH1-215ENST00000547672 HDGFL1Q5TGJ6 251 aa16.96■□□□□ 0.31
PTCH1-215ENST00000547672 SLC52A2Q9HAB3 445 aa16.96■□□□□ 0.31
PTCH1-215ENST00000547672 COL14A1Q05707 1796 aaKnown RBP16.95■□□□□ 0.3
PTCH1-215ENST00000547672 ERVV-2B6SEH9 535 aa16.95■□□□□ 0.3
PTCH1-215ENST00000547672 CDCA7Q9BWT1 371 aaPredicted RBP16.95■□□□□ 0.3
PTCH1-215ENST00000547672 PARP4Q9UKK3 1724 aaKnown RBP16.95■□□□□ 0.3
PTCH1-215ENST00000547672 ADAMTS7Q9UKP4 1686 aa16.94■□□□□ 0.3
PTCH1-215ENST00000547672 KRT24Q2M2I5 525 aa16.94■□□□□ 0.3
PTCH1-215ENST00000547672 STRN4Q9NRL3 753 aa16.94■□□□□ 0.3
PTCH1-215ENST00000547672 TNNQ9UQP3 1299 aa16.94■□□□□ 0.3
PTCH1-215ENST00000547672 CABP4P57796 275 aa16.93■□□□□ 0.3
PTCH1-215ENST00000547672 NKX1-1Q15270 411 aaPredicted RBP16.93■□□□□ 0.3
PTCH1-215ENST00000547672 TTC5Q8N0Z6 440 aa16.93■□□□□ 0.3
PTCH1-215ENST00000547672 BTG4Q9NY30 223 aa16.93■□□□□ 0.3
PTCH1-215ENST00000547672 DBF4Q9UBU7 674 aaPredicted RBP16.93■□□□□ 0.3
PTCH1-215ENST00000547672 HDAC5Q9UQL6 1122 aa16.93■□□□□ 0.3
PTCH1-215ENST00000547672 PCDHB15Q9Y5E8 787 aa16.93■□□□□ 0.3
PTCH1-215ENST00000547672 PKD1L3Q7Z443 1732 aa16.93■□□□□ 0.3
PTCH1-215ENST00000547672 MEGF6O75095 1541 aa16.92■□□□□ 0.3
PTCH1-215ENST00000547672 IGHDP01880 384 aa16.92■□□□□ 0.3
PTCH1-215ENST00000547672 KDM3BQ7LBC6 1761 aa16.92■□□□□ 0.3
PTCH1-215ENST00000547672 PHLPP1O60346 1717 aa16.91■□□□□ 0.3
PTCH1-215ENST00000547672 FLIIQ13045 1269 aa16.91■□□□□ 0.3
PTCH1-215ENST00000547672 FKBP5Q13451 457 aaPredicted RBP16.91■□□□□ 0.3
PTCH1-215ENST00000547672 ZNF790Q6PG37 636 aa16.91■□□□□ 0.3
PTCH1-215ENST00000547672 LARP1Q6PKG0 1096 aaKnown RBP16.91■□□□□ 0.3
PTCH1-215ENST00000547672 GCC1Q96CN9 775 aa16.91■□□□□ 0.3
PTCH1-215ENST00000547672 HYPKQ9NX55 129 aa16.91■□□□□ 0.3
PTCH1-215ENST00000547672 SCN11AQ9UI33 1791 aa16.91■□□□□ 0.3
PTCH1-215ENST00000547672 UBAP1LF5GYI3 381 aa16.9■□□□□ 0.3
PTCH1-215ENST00000547672 CYP27B1O15528 508 aa16.9■□□□□ 0.3
PTCH1-215ENST00000547672 GIGYF1O75420 1035 aaPredicted RBP16.9■□□□□ 0.3
PTCH1-215ENST00000547672 GNAI3P08754 354 aa16.9■□□□□ 0.3
PTCH1-215ENST00000547672 RPAP2Q8IXW5 612 aaPredicted RBP16.9■□□□□ 0.3
PTCH1-215ENST00000547672 THRAP3Q9Y2W1 955 aaKnown RBP16.9■□□□□ 0.3
PTCH1-215ENST00000547672 HEG1Q9ULI3 1381 aa16.89■□□□□ 0.3
PTCH1-215ENST00000547672 VIRMAQ69YN4 1812 aaKnown RBP16.89■□□□□ 0.29
PTCH1-215ENST00000547672 NFATC2IPQ8NCF5 419 aa16.89■□□□□ 0.29
PTCH1-215ENST00000547672 FMNL2Q96PY5 1086 aa16.89■□□□□ 0.29
PTCH1-215ENST00000547672 DDX58O95786 925 aaKnown RBP16.88■□□□□ 0.29
PTCH1-215ENST00000547672 SNRPA1P09661 255 aaKnown RBP16.88■□□□□ 0.29
PTCH1-215ENST00000547672 EIF2S2P20042 333 aaKnown RBP16.88■□□□□ 0.29
PTCH1-215ENST00000547672 PIP4K2BP78356 416 aa16.88■□□□□ 0.29
PTCH1-215ENST00000547672 SIPA1L3O60292 1781 aaPredicted RBP16.87■□□□□ 0.29
PTCH1-215ENST00000547672 HMMRO75330 724 aa16.87■□□□□ 0.29
PTCH1-215ENST00000547672 ZBTB47Q9UFB7 747 aaPredicted RBP16.87■□□□□ 0.29
PTCH1-215ENST00000547672 RBM19Q9Y4C8 960 aaKnown RBP16.87■□□□□ 0.29
PTCH1-215ENST00000547672 MRC1P22897 1456 aa16.86■□□□□ 0.29
PTCH1-215ENST00000547672 SLC4A10Q6U841 1118 aa16.86■□□□□ 0.29
PTCH1-215ENST00000547672 ILDR2Q71H61 639 aa16.86■□□□□ 0.29
PTCH1-215ENST00000547672 SMC5Q8IY18 1101 aa16.86■□□□□ 0.29
PTCH1-215ENST00000547672 KDM6AO15550 1401 aaPredicted RBP16.86■□□□□ 0.29
PTCH1-215ENST00000547672 PXDNLA1KZ92 1463 aa16.86■□□□□ 0.29
PTCH1-215ENST00000547672 EXOC5O00471 708 aa16.85■□□□□ 0.29
PTCH1-215ENST00000547672 DDX21Q9NR30 783 aaKnown RBP eCLIP16.85■□□□□ 0.29
PTCH1-215ENST00000547672 COL16A1Q07092 1604 aaPredicted RBP16.85■□□□□ 0.29
PTCH1-215ENST00000547672 G2E3Q7L622 706 aa16.84■□□□□ 0.29
PTCH1-215ENST00000547672 DDX54Q8TDD1 881 aaKnown RBP16.84■□□□□ 0.29
PTCH1-215ENST00000547672 ERBB4Q15303 1308 aa16.84■□□□□ 0.29
PTCH1-215ENST00000547672 RGS12O14924 1447 aa16.83■□□□□ 0.28
PTCH1-215ENST00000547672 KCNQ3O43525 872 aa16.83■□□□□ 0.28
PTCH1-215ENST00000547672 GNAI2P04899 355 aa16.83■□□□□ 0.28
PTCH1-215ENST00000547672 NECTIN2Q92692 538 aa16.83■□□□□ 0.28
PTCH1-215ENST00000547672 TEX13AQ9BXU3 409 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-215ENST00000547672 CHPF2Q9P2E5 772 aa16.83■□□□□ 0.28
PTCH1-215ENST00000547672 JCADQ9P266 1359 aa16.82■□□□□ 0.28
PTCH1-215ENST00000547672 PDE4AP27815 886 aa16.82■□□□□ 0.28
PTCH1-215ENST00000547672 ANKRD44Q8N8A2 993 aa16.82■□□□□ 0.28
PTCH1-215ENST00000547672 SRCIN1Q9C0H9 1055 aa16.82■□□□□ 0.28
PTCH1-215ENST00000547672 PDZRN3Q9UPQ7 1066 aa16.82■□□□□ 0.28
PTCH1-215ENST00000547672 EIF5BO60841 1220 aaKnown RBP16.81■□□□□ 0.28
PTCH1-215ENST00000547672 ALDH1L1O75891 902 aa16.81■□□□□ 0.28
PTCH1-215ENST00000547672 FAM161AQ3B820 660 aa16.81■□□□□ 0.28
PTCH1-215ENST00000547672 KSR2Q6VAB6 950 aa16.81■□□□□ 0.28
PTCH1-215ENST00000547672 DNAAF4Q8WXU2 420 aa16.81■□□□□ 0.28
PTCH1-215ENST00000547672 TMOD3Q9NYL9 352 aa16.81■□□□□ 0.28
PTCH1-215ENST00000547672 SPATA31A6Q5VVP1 1343 aa16.8■□□□□ 0.28
PTCH1-215ENST00000547672 ADAMTS2O95450 1211 aa16.8■□□□□ 0.28
PTCH1-215ENST00000547672 RGS3P49796 1198 aa16.8■□□□□ 0.28
PTCH1-215ENST00000547672 BACH2Q9BYV9 841 aa16.8■□□□□ 0.28
PTCH1-215ENST00000547672 USP35Q9P2H5 1018 aa16.8■□□□□ 0.28
PTCH1-215ENST00000547672 IBTKQ9P2D0 1353 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-215ENST00000547672 NUCB1Q02818 461 aa16.79■□□□□ 0.28
PTCH1-215ENST00000547672 ZNF496Q96IT1 587 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-215ENST00000547672 NUTM2BA6NNL0 878 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-215ENST00000547672 NUTM2EB1AL46 878 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-215ENST00000547672 F6X3S4 739 aa16.78■□□□□ 0.28
PTCH1-215ENST00000547672 SOCS7O14512 581 aa16.78■□□□□ 0.28
PTCH1-215ENST00000547672 UBTFL1P0CB47 393 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-215ENST00000547672 NEXNQ0ZGT2 675 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms