RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	DCAF5	Q96JK2	942 aa		31.58	■■■□□ 2.65
SMARCD1-204	ENST00000547637	IGSF1	Q8N6C5	1336 aa		31.57	■■■□□ 2.64
SMARCD1-204	ENST00000547637	SENP3-EIF4A1	A0A087X0R7	540 aa		31.57	■■■□□ 2.64
SMARCD1-204	ENST00000547637	CCER1	Q8TC90	406 aa	Predicted RBP	31.57	■■■□□ 2.64
SMARCD1-204	ENST00000547637	ATG3	Q9NT62	314 aa		31.57	■■■□□ 2.64
SMARCD1-204	ENST00000547637	UBR3	Q6ZT12	1888 aa		31.57	■■■□□ 2.64
SMARCD1-204	ENST00000547637	KNSTRN	Q9Y448	316 aa		31.54	■■■□□ 2.64
SMARCD1-204	ENST00000547637	RBM42	Q9BTD8	480 aa	Known RBP	31.53	■■■□□ 2.64
SMARCD1-204	ENST00000547637	RTCB	Q9Y3I0	505 aa	Known RBP	31.53	■■■□□ 2.64
SMARCD1-204	ENST00000547637	ITPK1	Q13572	414 aa		31.52	■■■□□ 2.64
SMARCD1-204	ENST00000547637	C1orf141	Q5JVX7	400 aa		31.52	■■■□□ 2.64
SMARCD1-204	ENST00000547637	TRAPPC3L	Q5T215	181 aa		31.52	■■■□□ 2.64
SMARCD1-204	ENST00000547637	AMIGO3	Q86WK7	504 aa		31.52	■■■□□ 2.64
SMARCD1-204	ENST00000547637	CABP4	P57796	275 aa		31.51	■■■□□ 2.63
SMARCD1-204	ENST00000547637	ZNF530	Q6P9A1	599 aa	Predicted RBP	31.51	■■■□□ 2.63
SMARCD1-204	ENST00000547637	SMIM5	Q71RC9	77 aa		31.5	■■■□□ 2.63
SMARCD1-204	ENST00000547637	MTHFS	P49914	203 aa		31.48	■■■□□ 2.63
SMARCD1-204	ENST00000547637	ADRA2B	P18089	450 aa		31.47	■■■□□ 2.63
SMARCD1-204	ENST00000547637	RC3H1	Q5TC82	1133 aa	Known RBP	31.47	■■■□□ 2.63
SMARCD1-204	ENST00000547637	NLGN1	Q8N2Q7	840 aa		31.47	■■■□□ 2.63
SMARCD1-204	ENST00000547637	MMP10	P09238	476 aa		31.43	■■■□□ 2.62
SMARCD1-204	ENST00000547637	RFC4	P35249	363 aa		31.43	■■■□□ 2.62
SMARCD1-204	ENST00000547637	GPBP1L1	Q9HC44	474 aa	Predicted RBP	31.43	■■■□□ 2.62
SMARCD1-204	ENST00000547637	GOLGB1	Q14789	3259 aa	Known RBP	31.43	■■■□□ 2.62
SMARCD1-204	ENST00000547637	SULT6B1	Q6IMI4	303 aa		31.42	■■■□□ 2.62
SMARCD1-204	ENST00000547637	KDR	P35968	1356 aa		31.41	■■■□□ 2.62
SMARCD1-204	ENST00000547637	RPS6KA4	O75676	772 aa		31.4	■■■□□ 2.62
SMARCD1-204	ENST00000547637	CNTNAP4	Q9C0A0	1308 aa		31.4	■■■□□ 2.62
SMARCD1-204	ENST00000547637	ATP10D	Q9P241	1426 aa		31.4	■■■□□ 2.62
SMARCD1-204	ENST00000547637	ZNF831	Q5JPB2	1677 aa		31.39	■■■□□ 2.62
SMARCD1-204	ENST00000547637	TGFB2	P61812	414 aa		31.39	■■■□□ 2.62
SMARCD1-204	ENST00000547637	WWC3	Q9ULE0	1092 aa		31.39	■■■□□ 2.62
SMARCD1-204	ENST00000547637	ARHGEF1	Q92888	912 aa	Known RBP	31.38	■■■□□ 2.61
SMARCD1-204	ENST00000547637	AEBP1	Q8IUX7	1158 aa		31.37	■■■□□ 2.61
SMARCD1-204	ENST00000547637	NFATC2IP	Q8NCF5	419 aa		31.37	■■■□□ 2.61
SMARCD1-204	ENST00000547637	SLC4A9	Q96Q91	983 aa		31.37	■■■□□ 2.61
SMARCD1-204	ENST00000547637	PTCD1	O75127	700 aa	Known RBP	31.36	■■■□□ 2.61
SMARCD1-204	ENST00000547637	CCDC87	Q9NVE4	849 aa		31.36	■■■□□ 2.61
SMARCD1-204	ENST00000547637	PARP3	Q9Y6F1	533 aa		31.36	■■■□□ 2.61
SMARCD1-204	ENST00000547637	KDM6A	O15550	1401 aa	Predicted RBP	31.35	■■■□□ 2.61
SMARCD1-204	ENST00000547637	IL13	P35225	146 aa		31.35	■■■□□ 2.61
SMARCD1-204	ENST00000547637	AKAP4	Q5JQC9	854 aa		31.32	■■■□□ 2.6
SMARCD1-204	ENST00000547637	GYS1	P13807	737 aa		31.31	■■■□□ 2.6
SMARCD1-204	ENST00000547637	ZNF526	Q8TF50	670 aa	Predicted RBP	31.3	■■■□□ 2.6
SMARCD1-204	ENST00000547637	AMER1	Q5JTC6	1135 aa	Predicted RBP	31.29	■■■□□ 2.6
SMARCD1-204	ENST00000547637	CRKL	P46109	303 aa	Known RBP	31.28	■■■□□ 2.6
SMARCD1-204	ENST00000547637	BCS1L	Q9Y276	419 aa		31.28	■■■□□ 2.6
SMARCD1-204	ENST00000547637	ADCY9	O60503	1353 aa		31.28	■■■□□ 2.6
SMARCD1-204	ENST00000547637	COL5A3	P25940	1745 aa	Predicted RBP	31.27	■■■□□ 2.6
SMARCD1-204	ENST00000547637	CIC	Q96RK0	1608 aa	Predicted RBP	31.27	■■■□□ 2.6
SMARCD1-204	ENST00000547637		A0A0G2JLW4	131 aa		31.26	■■■□□ 2.59
SMARCD1-204	ENST00000547637	KIF13B	Q9NQT8	1826 aa		31.24	■■■□□ 2.59
SMARCD1-204	ENST00000547637	SLC52A2	Q9HAB3	445 aa		31.24	■■■□□ 2.59
SMARCD1-204	ENST00000547637	PXDNL	A1KZ92	1463 aa		31.24	■■■□□ 2.59
SMARCD1-204	ENST00000547637	KIF7	Q2M1P5	1343 aa		31.24	■■■□□ 2.59
SMARCD1-204	ENST00000547637	MYH14	Q7Z406	1995 aa	Known RBP	31.23	■■■□□ 2.59
SMARCD1-204	ENST00000547637	C10orf71	Q711Q0	1435 aa		31.22	■■■□□ 2.59
SMARCD1-204	ENST00000547637	DIAPH1	O60610	1272 aa	Known RBP	31.21	■■■□□ 2.59
SMARCD1-204	ENST00000547637	ZPR1	O75312	459 aa		31.21	■■■□□ 2.59
SMARCD1-204	ENST00000547637	FCHSD2	O94868	740 aa		31.21	■■■□□ 2.59
SMARCD1-204	ENST00000547637	DPEP1	P16444	411 aa		31.21	■■■□□ 2.59
SMARCD1-204	ENST00000547637	ARHGAP27	Q6ZUM4	889 aa		31.21	■■■□□ 2.59
SMARCD1-204	ENST00000547637	C4A	P0C0L4	1744 aa		31.21	■■■□□ 2.59
SMARCD1-204	ENST00000547637	SCN11A	Q9UI33	1791 aa		31.2	■■■□□ 2.59
SMARCD1-204	ENST00000547637	HMOX1	P09601	288 aa		31.2	■■■□□ 2.59
SMARCD1-204	ENST00000547637	USP42	Q9H9J4	1324 aa	Known RBP	31.2	■■■□□ 2.58
SMARCD1-204	ENST00000547637	N4BP2	Q86UW6	1770 aa	Predicted RBP	31.19	■■■□□ 2.58
SMARCD1-204	ENST00000547637	RNMT	O43148	476 aa	Known RBP	31.18	■■■□□ 2.58
SMARCD1-204	ENST00000547637	CC2D1B	Q5T0F9	858 aa	Known RBP	31.18	■■■□□ 2.58
SMARCD1-204	ENST00000547637	PIM2	Q9P1W9	311 aa		31.18	■■■□□ 2.58
SMARCD1-204	ENST00000547637	LGR6	Q9HBX8	967 aa		31.17	■■■□□ 2.58
SMARCD1-204	ENST00000547637	SRP68	Q9UHB9	627 aa	Known RBP	31.17	■■■□□ 2.58
SMARCD1-204	ENST00000547637	FKBP8	Q14318	412 aa		31.15	■■■□□ 2.58
SMARCD1-204	ENST00000547637	INTS5	Q6P9B9	1019 aa	Known RBP	31.15	■■■□□ 2.58
SMARCD1-204	ENST00000547637	DNAJC10	Q8IXB1	793 aa		31.15	■■■□□ 2.58
SMARCD1-204	ENST00000547637	PER1	O15534	1290 aa	Predicted RBP	31.14	■■■□□ 2.58
SMARCD1-204	ENST00000547637	HSPA6	P17066	643 aa		31.14	■■■□□ 2.58
SMARCD1-204	ENST00000547637	MTHFSD	Q2M296	383 aa	Known RBP	31.12	■■■□□ 2.57
SMARCD1-204	ENST00000547637	VSIG10	Q8N0Z9	540 aa		31.12	■■■□□ 2.57
SMARCD1-204	ENST00000547637	SLC39A6	Q13433	755 aa		31.11	■■■□□ 2.57
SMARCD1-204	ENST00000547637	DALRD3	Q5D0E6	543 aa	Known RBP	31.11	■■■□□ 2.57
SMARCD1-204	ENST00000547637	USPL1	Q5W0Q7	1092 aa		31.1	■■■□□ 2.57
SMARCD1-204	ENST00000547637	TTC5	Q8N0Z6	440 aa		31.1	■■■□□ 2.57
SMARCD1-204	ENST00000547637	TJP1	Q07157	1748 aa		31.1	■■■□□ 2.57
SMARCD1-204	ENST00000547637	KIAA1551	Q9HCM1	1747 aa		31.1	■■■□□ 2.57
SMARCD1-204	ENST00000547637	KIF3C	O14782	793 aa		31.09	■■■□□ 2.57
SMARCD1-204	ENST00000547637	CYP19A1	P11511	503 aa	Predicted RBP	31.09	■■■□□ 2.57
SMARCD1-204	ENST00000547637	SOS1	Q07889	1333 aa	Predicted RBP	31.08	■■■□□ 2.57
SMARCD1-204	ENST00000547637	KCNA3	P22001	575 aa		31.08	■■■□□ 2.57
SMARCD1-204	ENST00000547637	TM4SF1	P30408	202 aa		31.08	■■■□□ 2.57
SMARCD1-204	ENST00000547637	U2SURP	O15042	1029 aa	Known RBP	31.07	■■■□□ 2.56
SMARCD1-204	ENST00000547637	DDR1	Q08345	913 aa		31.07	■■■□□ 2.56
SMARCD1-204	ENST00000547637	NARF	Q9UHQ1	456 aa		31.07	■■■□□ 2.56
SMARCD1-204	ENST00000547637	POLRMT	O00411	1230 aa	Known RBP	31.06	■■■□□ 2.56
SMARCD1-204	ENST00000547637	STARD3NL	O95772	234 aa		31.06	■■■□□ 2.56
SMARCD1-204	ENST00000547637	GAS2L2	Q8NHY3	880 aa		31.06	■■■□□ 2.56
SMARCD1-204	ENST00000547637	MRC1	P22897	1456 aa		31.06	■■■□□ 2.56
SMARCD1-204	ENST00000547637	NPC1L1	Q9UHC9	1359 aa		31.05	■■■□□ 2.56
SMARCD1-204	ENST00000547637	TEF	Q10587	303 aa		31.05	■■■□□ 2.56
SMARCD1-204	ENST00000547637	TOMM70	O94826	608 aa		31.04	■■■□□ 2.56

Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms