RNA–Protein interactions for RNA: ENST00000547614.5

CHMP1A-203, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 653 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-203ENST00000547614 ATP6V1AP38606 617 aa25.19■■□□□ 1.62
CHMP1A-203ENST00000547614 AKAP4Q5JQC9 854 aa25.18■■□□□ 1.62
CHMP1A-203ENST00000547614 LINC00116Q8NCU8 138 aa25.18■■□□□ 1.62
CHMP1A-203ENST00000547614 HMOX1P09601 288 aa25.17■■□□□ 1.62
CHMP1A-203ENST00000547614 ITPK1Q13572 414 aa25.17■■□□□ 1.62
CHMP1A-203ENST00000547614 SSFA2P28290 1259 aa25.16■■□□□ 1.62
CHMP1A-203ENST00000547614 CNGB1Q14028 1251 aaPredicted RBP25.16■■□□□ 1.62
CHMP1A-203ENST00000547614 NFATC2IPQ8NCF5 419 aa25.15■■□□□ 1.62
CHMP1A-203ENST00000547614 ZNF831Q5JPB2 1677 aa25.14■■□□□ 1.62
CHMP1A-203ENST00000547614 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.14■■□□□ 1.62
CHMP1A-203ENST00000547614 COL3A1P02461 1466 aaPredicted RBP25.14■■□□□ 1.61
CHMP1A-203ENST00000547614 UBR3Q6ZT12 1888 aa25.13■■□□□ 1.61
CHMP1A-203ENST00000547614 AMIGO3Q86WK7 504 aa25.13■■□□□ 1.61
CHMP1A-203ENST00000547614 SLC4A9Q96Q91 983 aa25.13■■□□□ 1.61
CHMP1A-203ENST00000547614 RBM42Q9BTD8 480 aaKnown RBP25.13■■□□□ 1.61
CHMP1A-203ENST00000547614 RC3H1Q5TC82 1133 aaKnown RBP25.11■■□□□ 1.61
CHMP1A-203ENST00000547614 MSL1Q68DK7 614 aa25.11■■□□□ 1.61
CHMP1A-203ENST00000547614 GNPATO15228 680 aa25.1■■□□□ 1.61
CHMP1A-203ENST00000547614 PHF14O94880 888 aa25.1■■□□□ 1.61
CHMP1A-203ENST00000547614 MTHFSDQ2M296 383 aaKnown RBP25.1■■□□□ 1.61
CHMP1A-203ENST00000547614 CFAP53Q96M91 514 aa25.1■■□□□ 1.61
CHMP1A-203ENST00000547614 SCN11AQ9UI33 1791 aa25.1■■□□□ 1.61
CHMP1A-203ENST00000547614 U2SURPO15042 1029 aaKnown RBP25.09■■□□□ 1.61
CHMP1A-203ENST00000547614 YY1P25490 414 aa25.09■■□□□ 1.61
CHMP1A-203ENST00000547614 SLC52A2Q9HAB3 445 aa25.09■■□□□ 1.61
CHMP1A-203ENST00000547614 KLHL34Q8N239 644 aa25.08■■□□□ 1.61
CHMP1A-203ENST00000547614 LGR6Q9HBX8 967 aa25.08■■□□□ 1.61
CHMP1A-203ENST00000547614 RNMTO43148 476 aaKnown RBP25.07■■□□□ 1.6
CHMP1A-203ENST00000547614 SMIM5Q71RC9 77 aa25.07■■□□□ 1.6
CHMP1A-203ENST00000547614 PTCD1O75127 700 aaKnown RBP25.06■■□□□ 1.6
CHMP1A-203ENST00000547614 RTCBQ9Y3I0 505 aaKnown RBP25.06■■□□□ 1.6
CHMP1A-203ENST00000547614 CNTNAP4Q9C0A0 1308 aa25.06■■□□□ 1.6
CHMP1A-203ENST00000547614 PPP2R1AP30153 589 aa25.05■■□□□ 1.6
CHMP1A-203ENST00000547614 ADRA2BP18089 450 aa25.04■■□□□ 1.6
CHMP1A-203ENST00000547614 TRAPPC3LQ5T215 181 aa25.04■■□□□ 1.6
CHMP1A-203ENST00000547614 NUDCQ9Y266 331 aa25.04■■□□□ 1.6
CHMP1A-203ENST00000547614 CD2APQ9Y5K6 639 aa25.04■■□□□ 1.6
CHMP1A-203ENST00000547614 MRC1P22897 1456 aa25.03■■□□□ 1.6
CHMP1A-203ENST00000547614 RPS6KA4O75676 772 aa25.03■■□□□ 1.6
CHMP1A-203ENST00000547614 COL5A3P25940 1745 aaPredicted RBP25.03■■□□□ 1.6
CHMP1A-203ENST00000547614 ADAMTS7Q9UKP4 1686 aa25.02■■□□□ 1.6
CHMP1A-203ENST00000547614 GPR162Q16538 588 aa25.02■■□□□ 1.6
CHMP1A-203ENST00000547614 NLGN2Q8NFZ4 835 aa25.02■■□□□ 1.6
CHMP1A-203ENST00000547614 GAS2L2Q8NHY3 880 aa25.02■■□□□ 1.6
CHMP1A-203ENST00000547614 UTRNP46939 3433 aa24.99■■□□□ 1.59
CHMP1A-203ENST00000547614 GNAT3A8MTJ3 354 aa24.99■■□□□ 1.59
CHMP1A-203ENST00000547614 ARHGEF1Q92888 912 aaKnown RBP24.99■■□□□ 1.59
CHMP1A-203ENST00000547614 CICQ96RK0 1608 aaPredicted RBP24.99■■□□□ 1.59
CHMP1A-203ENST00000547614 CRKLP46109 303 aaKnown RBP24.98■■□□□ 1.59
CHMP1A-203ENST00000547614 NLGN1Q8N2Q7 840 aa24.98■■□□□ 1.59
CHMP1A-203ENST00000547614 RSPH6AQ9H0K4 717 aa24.98■■□□□ 1.59
CHMP1A-203ENST00000547614 MYH14Q7Z406 1995 aaKnown RBP24.97■■□□□ 1.59
CHMP1A-203ENST00000547614 VIRMAQ69YN4 1812 aaKnown RBP24.97■■□□□ 1.59
CHMP1A-203ENST00000547614 PRKAR2BP31323 418 aa24.96■■□□□ 1.59
CHMP1A-203ENST00000547614 RFC4P35249 363 aa24.96■■□□□ 1.59
CHMP1A-203ENST00000547614 SLC39A6Q13433 755 aa24.96■■□□□ 1.59
CHMP1A-203ENST00000547614 FCHSD2O94868 740 aa24.95■■□□□ 1.58
CHMP1A-203ENST00000547614 U2AF1L5P0DN76 240 aaPredicted RBP24.95■■□□□ 1.58
CHMP1A-203ENST00000547614 U2AF1Q01081 240 aaKnown RBP eCLIP24.95■■□□□ 1.58
CHMP1A-203ENST00000547614 IL17REQ8NFR9 667 aa24.95■■□□□ 1.58
CHMP1A-203ENST00000547614 PHACTR3Q96KR7 559 aa24.95■■□□□ 1.58
CHMP1A-203ENST00000547614 VSIG10Q8N0Z9 540 aa24.94■■□□□ 1.58
CHMP1A-203ENST00000547614 TJP1Q07157 1748 aa24.94■■□□□ 1.58
CHMP1A-203ENST00000547614 CHD4Q14839 1912 aa24.93■■□□□ 1.58
CHMP1A-203ENST00000547614 MMP10P09238 476 aa24.93■■□□□ 1.58
CHMP1A-203ENST00000547614 TEFQ10587 303 aa24.93■■□□□ 1.58
CHMP1A-203ENST00000547614 INTS5Q6P9B9 1019 aaKnown RBP24.93■■□□□ 1.58
CHMP1A-203ENST00000547614 DNAJC10Q8IXB1 793 aa24.93■■□□□ 1.58
CHMP1A-203ENST00000547614 PELP1Q8IZL8 1130 aaKnown RBP24.93■■□□□ 1.58
CHMP1A-203ENST00000547614 GRIN3BO60391 1043 aa24.92■■□□□ 1.58
CHMP1A-203ENST00000547614 GYS1P13807 737 aa24.92■■□□□ 1.58
CHMP1A-203ENST00000547614 KCPQ6ZWJ8 1503 aa24.91■■□□□ 1.58
CHMP1A-203ENST00000547614 CYP19A1P11511 503 aaPredicted RBP24.91■■□□□ 1.58
CHMP1A-203ENST00000547614 CCDC87Q9NVE4 849 aa24.91■■□□□ 1.58
CHMP1A-203ENST00000547614 TTC5Q8N0Z6 440 aa24.9■■□□□ 1.58
CHMP1A-203ENST00000547614 CEMIPQ8WUJ3 1361 aa24.9■■□□□ 1.58
CHMP1A-203ENST00000547614 GOLGB1Q14789 3259 aaKnown RBP24.9■■□□□ 1.58
CHMP1A-203ENST00000547614 YBX3P16989 372 aaKnown RBP eCLIP24.89■■□□□ 1.586e-9■■□□□ 14.5
CHMP1A-203ENST00000547614 ZNF790Q6PG37 636 aa24.88■■□□□ 1.57
CHMP1A-203ENST00000547614 UBR2Q8IWV8 1755 aa24.87■■□□□ 1.57
CHMP1A-203ENST00000547614 USP42Q9H9J4 1324 aaKnown RBP24.86■■□□□ 1.57
CHMP1A-203ENST00000547614 C4AP0C0L4 1744 aa24.86■■□□□ 1.57
CHMP1A-203ENST00000547614 SOS1Q07889 1333 aaPredicted RBP24.86■■□□□ 1.57
CHMP1A-203ENST00000547614 TEX13AQ9BXU3 409 aaPredicted RBP24.85■■□□□ 1.57
CHMP1A-203ENST00000547614 HTATSF1O43719 755 aaKnown RBP24.84■■□□□ 1.57
CHMP1A-203ENST00000547614 STARD3NLO95772 234 aa24.84■■□□□ 1.57
CHMP1A-203ENST00000547614 RTF1Q92541 710 aaKnown RBP24.84■■□□□ 1.57
CHMP1A-203ENST00000547614 ZNF496Q96IT1 587 aaPredicted RBP24.84■■□□□ 1.57
CHMP1A-203ENST00000547614 SRP68Q9UHB9 627 aaKnown RBP24.84■■□□□ 1.57
CHMP1A-203ENST00000547614 PARP3Q9Y6F1 533 aa24.84■■□□□ 1.57
CHMP1A-203ENST00000547614 SIPA1L3O60292 1781 aaPredicted RBP24.84■■□□□ 1.57
CHMP1A-203ENST00000547614 TGFB2P61812 414 aa24.83■■□□□ 1.57
CHMP1A-203ENST00000547614 ZNF784Q8NCA9 323 aaPredicted RBP24.83■■□□□ 1.57
CHMP1A-203ENST00000547614 HEG1Q9ULI3 1381 aa24.82■■□□□ 1.56
CHMP1A-203ENST00000547614 ZPR1O75312 459 aa24.82■■□□□ 1.56
CHMP1A-203ENST00000547614 FKBP8Q14318 412 aa24.82■■□□□ 1.56
CHMP1A-203ENST00000547614 RALBP1Q15311 655 aa24.82■■□□□ 1.56
CHMP1A-203ENST00000547614 ZBTB1Q9Y2K1 713 aa24.82■■□□□ 1.56
CHMP1A-203ENST00000547614 BTBD11A6QL63 1104 aa24.81■■□□□ 1.56
CHMP1A-203ENST00000547614 FMNL2Q96PY5 1086 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms