RNA–Protein interactions for RNA: ENST00000546296.5

LTBR-215, Transcript of lymphotoxin beta receptor, humanhuman

TSL 4

Gene LTBR, Length 783 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-215ENST00000546296 ITGB4P16144 1822 aa22.2■■□□□ 1.14
LTBR-215ENST00000546296 RIPK4P57078 832 aa22.19■■□□□ 1.14
LTBR-215ENST00000546296 DCTN1Q14203 1278 aa22.19■■□□□ 1.14
LTBR-215ENST00000546296 RBM42Q9BTD8 480 aaKnown RBP22.19■■□□□ 1.14
LTBR-215ENST00000546296 RGPD3A6NKT7 1758 aaPredicted RBP22.19■■□□□ 1.14
LTBR-215ENST00000546296 RGPD4Q7Z3J3 1758 aa22.19■■□□□ 1.14
LTBR-215ENST00000546296 STK32BQ9NY57 414 aa22.18■■□□□ 1.14
LTBR-215ENST00000546296 LOC102724428A0A0B4J2F2 783 aa22.17■■□□□ 1.14
LTBR-215ENST00000546296 PSDA5PKW4 1024 aaPredicted RBP22.17■■□□□ 1.14
LTBR-215ENST00000546296 HMGB2P26583 209 aaKnown RBP22.17■■□□□ 1.14
LTBR-215ENST00000546296 TMPOP42166 694 aaKnown RBP22.17■■□□□ 1.14
LTBR-215ENST00000546296 SIK1P57059 783 aa22.17■■□□□ 1.14
LTBR-215ENST00000546296 R3HDM1Q15032 1099 aaKnown RBP22.17■■□□□ 1.14
LTBR-215ENST00000546296 NEUROD2Q15784 382 aa22.17■■□□□ 1.14
LTBR-215ENST00000546296 RRP7AQ9Y3A4 280 aaKnown RBP22.17■■□□□ 1.14
LTBR-215ENST00000546296 PTCD1O75127 700 aaKnown RBP22.16■■□□□ 1.14
LTBR-215ENST00000546296 SCN11AQ9UI33 1791 aa22.15■■□□□ 1.14
LTBR-215ENST00000546296 RREB1Q92766 1687 aa22.15■■□□□ 1.14
LTBR-215ENST00000546296 ATP6V1AP38606 617 aa22.15■■□□□ 1.14
LTBR-215ENST00000546296 LMOD3Q0VAK6 560 aa22.15■■□□□ 1.14
LTBR-215ENST00000546296 SLC39A6Q13433 755 aa22.15■■□□□ 1.14
LTBR-215ENST00000546296 CEMIPQ8WUJ3 1361 aa22.14■■□□□ 1.14
LTBR-215ENST00000546296 ANO8Q9HCE9 1232 aaPredicted RBP22.14■■□□□ 1.13
LTBR-215ENST00000546296 BTBD11A6QL63 1104 aa22.13■■□□□ 1.13
LTBR-215ENST00000546296 FAM9BQ8IZU0 186 aa22.13■■□□□ 1.13
LTBR-215ENST00000546296 TTC5Q8N0Z6 440 aa22.13■■□□□ 1.13
LTBR-215ENST00000546296 NUP188Q5SRE5 1749 aa22.13■■□□□ 1.13
LTBR-215ENST00000546296 MRC1P22897 1456 aa22.12■■□□□ 1.13
LTBR-215ENST00000546296 APAF1O14727 1248 aa22.12■■□□□ 1.13
LTBR-215ENST00000546296 SLC15A2Q16348 729 aa22.12■■□□□ 1.13
LTBR-215ENST00000546296 TAF7Q15545 349 aaPredicted RBP22.11■■□□□ 1.13
LTBR-215ENST00000546296 THUMPD2Q9BTF0 503 aaKnown RBP22.11■■□□□ 1.13
LTBR-215ENST00000546296 ADAMTS7Q9UKP4 1686 aa22.11■■□□□ 1.13
LTBR-215ENST00000546296 LY75O60449 1722 aa22.09■■□□□ 1.13
LTBR-215ENST00000546296 ITPK1Q13572 414 aa22.09■■□□□ 1.13
LTBR-215ENST00000546296 ZNF827Q17R98 1081 aa22.09■■□□□ 1.13
LTBR-215ENST00000546296 ZNF790Q6PG37 636 aa22.09■■□□□ 1.13
LTBR-215ENST00000546296 AKT1S1Q96B36 256 aa22.09■■□□□ 1.13
LTBR-215ENST00000546296 TFCP2L1Q9NZI6 479 aa22.09■■□□□ 1.13
LTBR-215ENST00000546296 CCER2I3L3R5 266 aa22.08■■□□□ 1.13
LTBR-215ENST00000546296 SLC4A9Q96Q91 983 aa22.08■■□□□ 1.13
LTBR-215ENST00000546296 LINC00116Q8NCU8 138 aa22.07■■□□□ 1.12
LTBR-215ENST00000546296 AK7Q96M32 723 aa22.07■■□□□ 1.12
LTBR-215ENST00000546296 MIS18AQ9NYP9 233 aa22.07■■□□□ 1.12
LTBR-215ENST00000546296 MIER1Q8N108 512 aa22.06■■□□□ 1.12
LTBR-215ENST00000546296 TRIM35Q9UPQ4 493 aa22.06■■□□□ 1.12
LTBR-215ENST00000546296 SENP3-EIF4A1A0A087X0R7 540 aa22.05■■□□□ 1.12
LTBR-215ENST00000546296 KCNQ3O43525 872 aa22.05■■□□□ 1.12
LTBR-215ENST00000546296 FMNL2Q96PY5 1086 aa22.05■■□□□ 1.12
LTBR-215ENST00000546296 ZNF496Q96IT1 587 aaPredicted RBP22.04■■□□□ 1.12
LTBR-215ENST00000546296 MSH5O43196 834 aa22.03■■□□□ 1.12
LTBR-215ENST00000546296 DNAJC10Q8IXB1 793 aa22.03■■□□□ 1.12
LTBR-215ENST00000546296 VSIG10Q8N0Z9 540 aa22.03■■□□□ 1.12
LTBR-215ENST00000546296 VIRMAQ69YN4 1812 aaKnown RBP22.03■■□□□ 1.12
LTBR-215ENST00000546296 DLG5Q8TDM6 1919 aa22.02■■□□□ 1.12
LTBR-215ENST00000546296 LAS1LQ9Y4W2 734 aaKnown RBP22.02■■□□□ 1.12
LTBR-215ENST00000546296 PAPPAQ13219 1627 aa22.02■■□□□ 1.11
LTBR-215ENST00000546296 GNPATO15228 680 aa22.01■■□□□ 1.11
LTBR-215ENST00000546296 TSPYL4Q9UJ04 414 aa22.01■■□□□ 1.11
LTBR-215ENST00000546296 RC3H1Q5TC82 1133 aaKnown RBP22■■□□□ 1.11
LTBR-215ENST00000546296 TEX13AQ9BXU3 409 aaPredicted RBP22■■□□□ 1.11
LTBR-215ENST00000546296 KCPQ6ZWJ8 1503 aa22■■□□□ 1.11
LTBR-215ENST00000546296 HEG1Q9ULI3 1381 aa21.99■■□□□ 1.11
LTBR-215ENST00000546296 C5P01031 1676 aa21.99■■□□□ 1.11
LTBR-215ENST00000546296 STARD3NLO95772 234 aa21.99■■□□□ 1.11
LTBR-215ENST00000546296 CALD1Q05682 793 aaKnown RBP21.99■■□□□ 1.11
LTBR-215ENST00000546296 FLAD1Q8NFF5 587 aa21.99■■□□□ 1.11
LTBR-215ENST00000546296 PDGFDQ9GZP0 370 aaPredicted RBP21.99■■□□□ 1.11
LTBR-215ENST00000546296 SALL2Q9Y467 1007 aaPredicted RBP21.99■■□□□ 1.11
LTBR-215ENST00000546296 SIPA1L3O60292 1781 aaPredicted RBP21.99■■□□□ 1.11
LTBR-215ENST00000546296 PHF14O94880 888 aa21.98■■□□□ 1.11
LTBR-215ENST00000546296 CRKLP46109 303 aaKnown RBP21.98■■□□□ 1.11
LTBR-215ENST00000546296 BABAM1Q9NWV8 329 aa21.98■■□□□ 1.11
LTBR-215ENST00000546296 RTCBQ9Y3I0 505 aaKnown RBP21.98■■□□□ 1.11
LTBR-215ENST00000546296 PNPLA7Q6ZV29 1317 aa21.98■■□□□ 1.11
LTBR-215ENST00000546296 CNTNAP4Q9C0A0 1308 aa21.98■■□□□ 1.11
LTBR-215ENST00000546296 SNRPA1P09661 255 aaKnown RBP21.97■■□□□ 1.11
LTBR-215ENST00000546296 CYP19A1P11511 503 aaPredicted RBP21.97■■□□□ 1.11
LTBR-215ENST00000546296 C4BP0C0L5 1744 aa21.97■■□□□ 1.11
LTBR-215ENST00000546296 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.96■■□□□ 1.11
LTBR-215ENST00000546296 ZBTB7AO95365 584 aa21.96■■□□□ 1.11
LTBR-215ENST00000546296 SMIM5Q71RC9 77 aa21.96■■□□□ 1.11
LTBR-215ENST00000546296 COL23A1Q86Y22 540 aaPredicted RBP21.96■■□□□ 1.11
LTBR-215ENST00000546296 CCDC87Q9NVE4 849 aa21.96■■□□□ 1.11
LTBR-215ENST00000546296 SSFA2P28290 1259 aa21.95■■□□□ 1.1
LTBR-215ENST00000546296 TRAPPC3LQ5T215 181 aa21.95■■□□□ 1.1
LTBR-215ENST00000546296 ZNF831Q5JPB2 1677 aa21.95■■□□□ 1.1
LTBR-215ENST00000546296 TAF1LQ8IZX4 1826 aa21.94■■□□□ 1.1
LTBR-215ENST00000546296 CHL1O00533 1208 aa21.94■■□□□ 1.1
LTBR-215ENST00000546296 RPS6KA4O75676 772 aa21.94■■□□□ 1.1
LTBR-215ENST00000546296 EIF4A1P60842 406 aaKnown RBP21.94■■□□□ 1.1
LTBR-215ENST00000546296 CCDC27Q2M243 656 aa21.94■■□□□ 1.1
LTBR-215ENST00000546296 INTS5Q6P9B9 1019 aaKnown RBP21.94■■□□□ 1.1
LTBR-215ENST00000546296 NCBP3Q53F19 620 aaKnown RBP21.93■■□□□ 1.1
LTBR-215ENST00000546296 AMIGO3Q86WK7 504 aa21.93■■□□□ 1.1
LTBR-215ENST00000546296 WWC1Q8IX03 1113 aa21.93■■□□□ 1.1
LTBR-215ENST00000546296 CFAP44Q96MT7 982 aa21.93■■□□□ 1.1
LTBR-215ENST00000546296 SPON1Q9HCB6 807 aa21.93■■□□□ 1.1
LTBR-215ENST00000546296 ATF5Q9Y2D1 282 aaPredicted RBP21.93■■□□□ 1.1
LTBR-215ENST00000546296 PRAMEF22A3QJZ6 481 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms