RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 LOC102724428A0A0B4J2F2 783 aa15.88■□□□□ 0.13
YBX3-217ENST00000546164 FCHSD2O94868 740 aa15.88■□□□□ 0.13
YBX3-217ENST00000546164 U2AF1L5P0DN76 240 aaPredicted RBP15.88■□□□□ 0.13
YBX3-217ENST00000546164 SIK1P57059 783 aa15.88■□□□□ 0.13
YBX3-217ENST00000546164 U2AF1Q01081 240 aaKnown RBP eCLIP15.88■□□□□ 0.133e-16■■□□□ 13.9
YBX3-217ENST00000546164 PDGFDQ9GZP0 370 aaPredicted RBP15.88■□□□□ 0.13
YBX3-217ENST00000546164 SPON1Q9HCB6 807 aa15.88■□□□□ 0.13
YBX3-217ENST00000546164 ADAMTS7Q9UKP4 1686 aa15.87■□□□□ 0.13
YBX3-217ENST00000546164 MRC1P22897 1456 aa15.87■□□□□ 0.13
YBX3-217ENST00000546164 RNMTO43148 476 aaKnown RBP15.87■□□□□ 0.13
YBX3-217ENST00000546164 PRKAR2BP31323 418 aa15.87■□□□□ 0.13
YBX3-217ENST00000546164 NFATC2IPQ8NCF5 419 aa15.86■□□□□ 0.13
YBX3-217ENST00000546164 SLC52A2Q9HAB3 445 aa15.86■□□□□ 0.13
YBX3-217ENST00000546164 PNPLA7Q6ZV29 1317 aa15.86■□□□□ 0.13
YBX3-217ENST00000546164 MYBBP1AQ9BQG0 1328 aaKnown RBP15.86■□□□□ 0.13
YBX3-217ENST00000546164 QSER1Q2KHR3 1735 aa15.85■□□□□ 0.13
YBX3-217ENST00000546164 SCN11AQ9UI33 1791 aa15.85■□□□□ 0.13
YBX3-217ENST00000546164 PHACTR3Q96KR7 559 aa15.85■□□□□ 0.13
YBX3-217ENST00000546164 MTFR1LQ9H019 292 aa15.85■□□□□ 0.13
YBX3-217ENST00000546164 LGR6Q9HBX8 967 aa15.85■□□□□ 0.13
YBX3-217ENST00000546164 TFCP2L1Q9NZI6 479 aa15.85■□□□□ 0.13
YBX3-217ENST00000546164 MAP3K5Q99683 1374 aa15.85■□□□□ 0.13
YBX3-217ENST00000546164 C5P01031 1676 aa15.84■□□□□ 0.13
YBX3-217ENST00000546164 GNAT3A8MTJ3 354 aa15.84■□□□□ 0.13
YBX3-217ENST00000546164 SLC16A10Q8TF71 515 aa15.84■□□□□ 0.13
YBX3-217ENST00000546164 ZNF831Q5JPB2 1677 aa15.83■□□□□ 0.13
YBX3-217ENST00000546164 TAF1LQ8IZX4 1826 aa15.83■□□□□ 0.12
YBX3-217ENST00000546164 ZNF316A6NFI3 1004 aaPredicted RBP15.83■□□□□ 0.12
YBX3-217ENST00000546164 ZBTB7AO95365 584 aa15.83■□□□□ 0.12
YBX3-217ENST00000546164 ATP6V1AP38606 617 aa15.83■□□□□ 0.12
YBX3-217ENST00000546164 ITPK1Q13572 414 aa15.83■□□□□ 0.12
YBX3-217ENST00000546164 SLC4A9Q96Q91 983 aa15.83■□□□□ 0.12
YBX3-217ENST00000546164 PRKRIP1Q9H875 184 aaPredicted RBP15.83■□□□□ 0.12
YBX3-217ENST00000546164 PTGER2P43116 358 aa15.82■□□□□ 0.12
YBX3-217ENST00000546164 LINC00116Q8NCU8 138 aa15.82■□□□□ 0.12
YBX3-217ENST00000546164 FLAD1Q8NFF5 587 aa15.82■□□□□ 0.12
YBX3-217ENST00000546164 CEMIPQ8WUJ3 1361 aa15.82■□□□□ 0.12
YBX3-217ENST00000546164 C4BP0C0L5 1744 aa15.82■□□□□ 0.12
YBX3-217ENST00000546164 IL17REQ8NFR9 667 aa15.81■□□□□ 0.12
YBX3-217ENST00000546164 SGIP1Q9BQI5 828 aa15.81■□□□□ 0.12
YBX3-217ENST00000546164 TUBGCP6Q96RT7 1819 aa15.8■□□□□ 0.12
YBX3-217ENST00000546164 COL23A1Q86Y22 540 aaPredicted RBP15.8■□□□□ 0.12
YBX3-217ENST00000546164 AK7Q96M32 723 aa15.8■□□□□ 0.12
YBX3-217ENST00000546164 HTATSF1O43719 755 aaKnown RBP15.79■□□□□ 0.12
YBX3-217ENST00000546164 PLEKHF1Q96S99 279 aa15.79■□□□□ 0.12
YBX3-217ENST00000546164 RBM42Q9BTD8 480 aaKnown RBP15.79■□□□□ 0.12
YBX3-217ENST00000546164 PNNQ9H307 717 aaKnown RBP15.79■□□□□ 0.12
YBX3-217ENST00000546164 ATF5Q9Y2D1 282 aaPredicted RBP15.79■□□□□ 0.12
YBX3-217ENST00000546164 CICQ96RK0 1608 aaPredicted RBP15.79■□□□□ 0.12
YBX3-217ENST00000546164 CNTNAP4Q9C0A0 1308 aa15.78■□□□□ 0.12
YBX3-217ENST00000546164 PTCD1O75127 700 aaKnown RBP15.78■□□□□ 0.12
YBX3-217ENST00000546164 SSFA2P28290 1259 aa15.78■□□□□ 0.12
YBX3-217ENST00000546164 RC3H1Q5TC82 1133 aaKnown RBP15.78■□□□□ 0.12
YBX3-217ENST00000546164 NEFMP07197 916 aa15.77■□□□□ 0.12
YBX3-217ENST00000546164 TEFQ10587 303 aa15.77■□□□□ 0.12
YBX3-217ENST00000546164 AMIGO3Q86WK7 504 aa15.77■□□□□ 0.12
YBX3-217ENST00000546164 PPP1R1BQ9UD71 204 aaPredicted RBP15.77■□□□□ 0.12
YBX3-217ENST00000546164 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.76■□□□□ 0.11
YBX3-217ENST00000546164 KCPQ6ZWJ8 1503 aa15.76■□□□□ 0.11
YBX3-217ENST00000546164 COL24A1Q17RW2 1714 aa15.76■□□□□ 0.11
YBX3-217ENST00000546164 UBR3Q6ZT12 1888 aa15.76■□□□□ 0.11
YBX3-217ENST00000546164 VIRMAQ69YN4 1812 aaKnown RBP15.75■□□□□ 0.11
YBX3-217ENST00000546164 COL5A3P25940 1745 aaPredicted RBP15.75■□□□□ 0.11
YBX3-217ENST00000546164 GNPATO15228 680 aa15.75■□□□□ 0.11
YBX3-217ENST00000546164 SLC39A6Q13433 755 aa15.75■□□□□ 0.11
YBX3-217ENST00000546164 VSIG10Q8N0Z9 540 aa15.75■□□□□ 0.11
YBX3-217ENST00000546164 RTF1Q92541 710 aaKnown RBP15.75■□□□□ 0.11
YBX3-217ENST00000546164 MAPK8IP3Q9UPT6 1336 aa15.73■□□□□ 0.11
YBX3-217ENST00000546164 SIPA1L3O60292 1781 aaPredicted RBP15.73■□□□□ 0.11
YBX3-217ENST00000546164 RPS6KA4O75676 772 aa15.73■□□□□ 0.11
YBX3-217ENST00000546164 POLD1P28340 1107 aa15.73■□□□□ 0.11
YBX3-217ENST00000546164 NFE2L2Q16236 605 aa15.73■□□□□ 0.11
YBX3-217ENST00000546164 ZNF790Q6PG37 636 aa15.73■□□□□ 0.11
YBX3-217ENST00000546164 TTC5Q8N0Z6 440 aa15.73■□□□□ 0.11
YBX3-217ENST00000546164 ARXQ96QS3 562 aa15.73■□□□□ 0.11
YBX3-217ENST00000546164 RTCBQ9Y3I0 505 aaKnown RBP15.73■□□□□ 0.11
YBX3-217ENST00000546164 TJP1Q07157 1748 aa15.73■□□□□ 0.11
YBX3-217ENST00000546164 UBR2Q8IWV8 1755 aa15.72■□□□□ 0.11
YBX3-217ENST00000546164 PHF14O94880 888 aa15.72■□□□□ 0.11
YBX3-217ENST00000546164 CRKLP46109 303 aaKnown RBP15.72■□□□□ 0.11
YBX3-217ENST00000546164 MCM10Q7L590 875 aa15.72■□□□□ 0.11
YBX3-217ENST00000546164 DNAJC10Q8IXB1 793 aa15.72■□□□□ 0.11
YBX3-217ENST00000546164 CYP19A1P11511 503 aaPredicted RBP15.71■□□□□ 0.11
YBX3-217ENST00000546164 SMIM5Q71RC9 77 aa15.71■□□□□ 0.11
YBX3-217ENST00000546164 MYH14Q7Z406 1995 aaKnown RBP15.71■□□□□ 0.1
YBX3-217ENST00000546164 BTBD11A6QL63 1104 aa15.7■□□□□ 0.1
YBX3-217ENST00000546164 DCTN1Q14203 1278 aa15.7■□□□□ 0.1
YBX3-217ENST00000546164 WDR43Q15061 677 aaKnown RBP eCLIP15.7■□□□□ 0.1
YBX3-217ENST00000546164 TRAPPC3LQ5T215 181 aa15.7■□□□□ 0.1
YBX3-217ENST00000546164 INTS5Q6P9B9 1019 aaKnown RBP15.7■□□□□ 0.1
YBX3-217ENST00000546164 ZNF496Q96IT1 587 aaPredicted RBP15.7■□□□□ 0.1
YBX3-217ENST00000546164 HEG1Q9ULI3 1381 aa15.7■□□□□ 0.1
YBX3-217ENST00000546164 ARHGEF1Q92888 912 aaKnown RBP15.69■□□□□ 0.1
YBX3-217ENST00000546164 FMNL2Q96PY5 1086 aa15.69■□□□□ 0.1
YBX3-217ENST00000546164 TEX13AQ9BXU3 409 aaPredicted RBP15.69■□□□□ 0.1
YBX3-217ENST00000546164 FHDC1Q9C0D6 1143 aaPredicted RBP15.69■□□□□ 0.1
YBX3-217ENST00000546164 CCDC87Q9NVE4 849 aa15.69■□□□□ 0.1
YBX3-217ENST00000546164 TAF7Q15545 349 aaPredicted RBP15.68■□□□□ 0.1
YBX3-217ENST00000546164 MSL1Q68DK7 614 aa15.68■□□□□ 0.1
YBX3-217ENST00000546164 SYT17Q9BSW7 474 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms