RNA–Protein interactions for RNA: ENST00000545831.5

NPIPA1-208, Transcript of nuclear pore complex interacting protein family member A1, human

TSL 3

Gene NPIPA1, Length 553 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPA1-208	ENST00000545831	ONECUT3	O60422	494 aa	Predicted RBP	12.93	□□□□□ -0.34
NPIPA1-208	ENST00000545831	NEFL	P07196	543 aa		12.93	□□□□□ -0.34
NPIPA1-208	ENST00000545831	ADRA2B	P18089	450 aa		12.93	□□□□□ -0.34
NPIPA1-208	ENST00000545831	PIAS4	Q8N2W9	510 aa	Predicted RBP	12.93	□□□□□ -0.34
NPIPA1-208	ENST00000545831	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	12.93	□□□□□ -0.34
NPIPA1-208	ENST00000545831	CHMP4A	Q9BY43	222 aa		12.93	□□□□□ -0.34
NPIPA1-208	ENST00000545831	SCN11A	Q9UI33	1791 aa		12.93	□□□□□ -0.34
NPIPA1-208	ENST00000545831	SOS1	Q07889	1333 aa	Predicted RBP	12.92	□□□□□ -0.34
NPIPA1-208	ENST00000545831	ELL2	O00472	640 aa	Predicted RBP	12.92	□□□□□ -0.34
NPIPA1-208	ENST00000545831	VAMP4	O75379	141 aa		12.92	□□□□□ -0.34
NPIPA1-208	ENST00000545831	RBM6	P78332	1123 aa	Known RBP	12.92	□□□□□ -0.34
NPIPA1-208	ENST00000545831	TTC5	Q8N0Z6	440 aa		12.92	□□□□□ -0.34
NPIPA1-208	ENST00000545831	MARCH10	Q8NA82	808 aa	Predicted RBP	12.92	□□□□□ -0.34
NPIPA1-208	ENST00000545831	C8orf58	Q8NAV2	365 aa		12.92	□□□□□ -0.34
NPIPA1-208	ENST00000545831	TMOD3	Q9NYL9	352 aa		12.92	□□□□□ -0.34
NPIPA1-208	ENST00000545831	MRC1	P22897	1456 aa		12.91	□□□□□ -0.34
NPIPA1-208	ENST00000545831	SHANK3	Q9BYB0	1731 aa		12.91	□□□□□ -0.34
NPIPA1-208	ENST00000545831	GLI3	P10071	1580 aa		12.91	□□□□□ -0.34
NPIPA1-208	ENST00000545831	RARS	P54136	660 aa	Known RBP	12.91	□□□□□ -0.34
NPIPA1-208	ENST00000545831	EIF4A1	P60842	406 aa	Known RBP	12.91	□□□□□ -0.34
NPIPA1-208	ENST00000545831	ALDH1L2	Q3SY69	923 aa		12.91	□□□□□ -0.34
NPIPA1-208	ENST00000545831	ZNF790	Q6PG37	636 aa		12.91	□□□□□ -0.34
NPIPA1-208	ENST00000545831	SEPT12	Q8IYM1	358 aa		12.91	□□□□□ -0.34
NPIPA1-208	ENST00000545831	TSPYL6	Q8N831	410 aa		12.91	□□□□□ -0.34
NPIPA1-208	ENST00000545831	KCNQ3	O43525	872 aa		12.89	□□□□□ -0.35
NPIPA1-208	ENST00000545831	HOXB7	P09629	217 aa		12.89	□□□□□ -0.35
NPIPA1-208	ENST00000545831	RXRB	P28702	533 aa		12.89	□□□□□ -0.35
NPIPA1-208	ENST00000545831	RRP1	P56182	461 aa	Known RBP	12.89	□□□□□ -0.35
NPIPA1-208	ENST00000545831	SLC39A6	Q13433	755 aa		12.89	□□□□□ -0.35
NPIPA1-208	ENST00000545831	KRT24	Q2M2I5	525 aa		12.89	□□□□□ -0.35
NPIPA1-208	ENST00000545831	SYTL4	Q96C24	671 aa	Predicted RBP	12.89	□□□□□ -0.35
NPIPA1-208	ENST00000545831	SMC4	Q9NTJ3	1288 aa		12.89	□□□□□ -0.35
NPIPA1-208	ENST00000545831	VIRMA	Q69YN4	1812 aa	Known RBP	12.89	□□□□□ -0.35
NPIPA1-208	ENST00000545831	RNF123	Q5XPI4	1314 aa		12.88	□□□□□ -0.35
NPIPA1-208	ENST00000545831	MSH5	O43196	834 aa		12.88	□□□□□ -0.35
NPIPA1-208	ENST00000545831	BCAR3	O75815	825 aa		12.88	□□□□□ -0.35
NPIPA1-208	ENST00000545831	CANX	P27824	592 aa	Known RBP	12.88	□□□□□ -0.35
NPIPA1-208	ENST00000545831	PRIM1	P49642	420 aa	Known RBP	12.88	□□□□□ -0.35
NPIPA1-208	ENST00000545831	CCDC30	Q5VVM6	783 aa		12.88	□□□□□ -0.35
NPIPA1-208	ENST00000545831	FMNL2	Q96PY5	1086 aa		12.88	□□□□□ -0.35
NPIPA1-208	ENST00000545831	THSD7A	Q9UPZ6	1657 aa		12.88	□□□□□ -0.35
NPIPA1-208	ENST00000545831	SIPA1L3	O60292	1781 aa	Predicted RBP	12.87	□□□□□ -0.35
NPIPA1-208	ENST00000545831	SSH1	Q8WYL5	1049 aa		12.87	□□□□□ -0.35
NPIPA1-208	ENST00000545831	PIGB	Q92521	554 aa		12.87	□□□□□ -0.35
NPIPA1-208	ENST00000545831	ACSBG1	Q96GR2	724 aa		12.87	□□□□□ -0.35
NPIPA1-208	ENST00000545831	BCL2L13	Q9BXK5	485 aa		12.87	□□□□□ -0.35
NPIPA1-208	ENST00000545831	STK31	Q9BXU1	1019 aa		12.87	□□□□□ -0.35
NPIPA1-208	ENST00000545831	KDM3B	Q7LBC6	1761 aa		12.86	□□□□□ -0.35
NPIPA1-208	ENST00000545831	IPO8	O15397	1037 aa	Known RBP	12.86	□□□□□ -0.35
NPIPA1-208	ENST00000545831	GIGYF1	O75420	1035 aa	Predicted RBP	12.86	□□□□□ -0.35
NPIPA1-208	ENST00000545831	SNRPA1	P09661	255 aa	Known RBP	12.86	□□□□□ -0.35
NPIPA1-208	ENST00000545831	FRAT1	Q92837	279 aa	Predicted RBP	12.86	□□□□□ -0.35
NPIPA1-208	ENST00000545831	BCL9	O00512	1426 aa		12.86	□□□□□ -0.35
NPIPA1-208	ENST00000545831	KIF16B	Q96L93	1317 aa		12.86	□□□□□ -0.35
NPIPA1-208	ENST00000545831	BRPF1	P55201	1214 aa	Predicted RBP	12.85	□□□□□ -0.35
NPIPA1-208	ENST00000545831	HDGFL1	Q5TGJ6	251 aa		12.85	□□□□□ -0.35
NPIPA1-208	ENST00000545831	KRT27	Q7Z3Y8	459 aa		12.85	□□□□□ -0.35
NPIPA1-208	ENST00000545831	ZNF496	Q96IT1	587 aa	Predicted RBP	12.85	□□□□□ -0.35
NPIPA1-208	ENST00000545831	HEG1	Q9ULI3	1381 aa		12.84	□□□□□ -0.35
NPIPA1-208	ENST00000545831	TCERG1	O14776	1098 aa	Known RBP	12.84	□□□□□ -0.35
NPIPA1-208	ENST00000545831	PLIN1	O60240	522 aa		12.84	□□□□□ -0.35
NPIPA1-208	ENST00000545831	MS4A1	P11836	297 aa		12.84	□□□□□ -0.35
NPIPA1-208	ENST00000545831	EIF2S2	P20042	333 aa	Known RBP	12.84	□□□□□ -0.35
NPIPA1-208	ENST00000545831	ZKSCAN2	Q63HK3	967 aa		12.84	□□□□□ -0.35
NPIPA1-208	ENST00000545831	MRPL50	Q8N5N7	158 aa	Known RBP	12.84	□□□□□ -0.35
NPIPA1-208	ENST00000545831	SMARCC1	Q92922	1105 aa	Predicted RBP	12.84	□□□□□ -0.35
NPIPA1-208	ENST00000545831	ATG3	Q9NT62	314 aa		12.84	□□□□□ -0.35
NPIPA1-208	ENST00000545831	ASAP1	Q9ULH1	1129 aa		12.84	□□□□□ -0.35
NPIPA1-208	ENST00000545831	TOGARAM1	Q9Y4F4	1720 aa		12.83	□□□□□ -0.36
NPIPA1-208	ENST00000545831	PTCD1	O75127	700 aa	Known RBP	12.83	□□□□□ -0.36
NPIPA1-208	ENST00000545831	SLC4A2	P04920	1241 aa		12.83	□□□□□ -0.36
NPIPA1-208	ENST00000545831	ILDR1	Q86SU0	546 aa	Predicted RBP	12.83	□□□□□ -0.36
NPIPA1-208	ENST00000545831	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.83	□□□□□ -0.36
NPIPA1-208	ENST00000545831	RGS17	Q9UGC6	210 aa	Predicted RBP	12.83	□□□□□ -0.36
NPIPA1-208	ENST00000545831	NOB1	Q9ULX3	412 aa	Known RBP	12.83	□□□□□ -0.36
NPIPA1-208	ENST00000545831	FKBP8	Q14318	412 aa		12.82	□□□□□ -0.36
NPIPA1-208	ENST00000545831	POTEA	Q6S8J7	498 aa		12.82	□□□□□ -0.36
NPIPA1-208	ENST00000545831	FAM196A	Q6ZSG2	479 aa		12.82	□□□□□ -0.36
NPIPA1-208	ENST00000545831	VSIG10	Q8N0Z9	540 aa		12.82	□□□□□ -0.36
NPIPA1-208	ENST00000545831	NECTIN2	Q92692	538 aa		12.82	□□□□□ -0.36
NPIPA1-208	ENST00000545831	RBM42	Q9BTD8	480 aa	Known RBP	12.82	□□□□□ -0.36
NPIPA1-208	ENST00000545831	DOT1L	Q8TEK3	1739 aa		12.82	□□□□□ -0.36
NPIPA1-208	ENST00000545831	ITGB4	P16144	1822 aa		12.81	□□□□□ -0.36
NPIPA1-208	ENST00000545831	KAT6B	Q8WYB5	2073 aa		12.81	□□□□□ -0.36
NPIPA1-208	ENST00000545831	KCNQ2	O43526	872 aa		12.81	□□□□□ -0.36
NPIPA1-208	ENST00000545831	IRX6	P78412	446 aa	Predicted RBP	12.81	□□□□□ -0.36
NPIPA1-208	ENST00000545831	PDE3A	Q14432	1141 aa		12.81	□□□□□ -0.36
NPIPA1-208	ENST00000545831	FAM182B	Q5T319	152 aa		12.81	□□□□□ -0.36
NPIPA1-208	ENST00000545831	ARHGAP45	Q92619	1136 aa		12.81	□□□□□ -0.36
NPIPA1-208	ENST00000545831	DBF4	Q9UBU7	674 aa	Predicted RBP	12.81	□□□□□ -0.36
NPIPA1-208	ENST00000545831	GTF3C3	Q9Y5Q9	886 aa		12.81	□□□□□ -0.36
NPIPA1-208	ENST00000545831	ERICH6B	Q5W0A0	696 aa		12.8	□□□□□ -0.36
NPIPA1-208	ENST00000545831	ATF7IP	Q6VMQ6	1270 aa		12.8	□□□□□ -0.36
NPIPA1-208	ENST00000545831	API5	Q9BZZ5	524 aa	Known RBP	12.8	□□□□□ -0.36
NPIPA1-208	ENST00000545831	USP16	Q9Y5T5	823 aa		12.8	□□□□□ -0.36
NPIPA1-208	ENST00000545831	PTPRC	P08575	1304 aa		12.8	□□□□□ -0.36
NPIPA1-208	ENST00000545831	PRAMEF22	A3QJZ6	481 aa		12.79	□□□□□ -0.36
NPIPA1-208	ENST00000545831	FTSJ3	Q8IY81	847 aa	Known RBP	12.79	□□□□□ -0.36
NPIPA1-208	ENST00000545831	DZIP1L	Q8IYY4	767 aa	Known RBP	12.79	□□□□□ -0.36
NPIPA1-208	ENST00000545831	DDX21	Q9NR30	783 aa	Known RBP eCLIP	12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms