RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 PNPLA7Q6ZV29 1317 aa15.79■□□□□ 0.12
HDAC4-216ENST00000544989 PTGER2P43116 358 aa15.79■□□□□ 0.12
HDAC4-216ENST00000544989 IFFO2Q5TF58 517 aa15.79■□□□□ 0.12
HDAC4-216ENST00000544989 PDGFDQ9GZP0 370 aaPredicted RBP15.79■□□□□ 0.12
HDAC4-216ENST00000544989 ATF5Q9Y2D1 282 aaPredicted RBP15.79■□□□□ 0.12
HDAC4-216ENST00000544989 C5P01031 1676 aa15.79■□□□□ 0.12
HDAC4-216ENST00000544989 FCHSD2O94868 740 aa15.78■□□□□ 0.12
HDAC4-216ENST00000544989 POLD1P28340 1107 aa15.78■□□□□ 0.12
HDAC4-216ENST00000544989 ATP6V1AP38606 617 aa15.78■□□□□ 0.12
HDAC4-216ENST00000544989 MTHFSDQ2M296 383 aaKnown RBP15.78■□□□□ 0.12
HDAC4-216ENST00000544989 RNMTO43148 476 aaKnown RBP15.77■□□□□ 0.12
HDAC4-216ENST00000544989 U2AF1L5P0DN76 240 aaPredicted RBP15.77■□□□□ 0.12
HDAC4-216ENST00000544989 U2AF1Q01081 240 aaKnown RBP eCLIP15.77■□□□□ 0.12
HDAC4-216ENST00000544989 NFATC2IPQ8NCF5 419 aa15.77■□□□□ 0.12
HDAC4-216ENST00000544989 SLC52A2Q9HAB3 445 aa15.77■□□□□ 0.12
HDAC4-216ENST00000544989 MSH5O43196 834 aa15.76■□□□□ 0.11
HDAC4-216ENST00000544989 NEFMP07197 916 aa15.76■□□□□ 0.11
HDAC4-216ENST00000544989 SSFA2P28290 1259 aa15.76■□□□□ 0.11
HDAC4-216ENST00000544989 ZNF831Q5JPB2 1677 aa15.76■□□□□ 0.11
HDAC4-216ENST00000544989 TAF1LQ8IZX4 1826 aa15.75■□□□□ 0.11
HDAC4-216ENST00000544989 SCN11AQ9UI33 1791 aa15.75■□□□□ 0.11
HDAC4-216ENST00000544989 C4BP0C0L5 1744 aa15.75■□□□□ 0.11
HDAC4-216ENST00000544989 GNAT3A8MTJ3 354 aa15.75■□□□□ 0.11
HDAC4-216ENST00000544989 C1QTNF8P60827 252 aa15.75■□□□□ 0.11
HDAC4-216ENST00000544989 DDX10Q13206 875 aaKnown RBP15.75■□□□□ 0.11
HDAC4-216ENST00000544989 SGIP1Q9BQI5 828 aa15.75■□□□□ 0.11
HDAC4-216ENST00000544989 RBM42Q9BTD8 480 aaKnown RBP15.75■□□□□ 0.11
HDAC4-216ENST00000544989 RSPH6AQ9H0K4 717 aa15.75■□□□□ 0.11
HDAC4-216ENST00000544989 PNNQ9H307 717 aaKnown RBP15.75■□□□□ 0.11
HDAC4-216ENST00000544989 MAP3K5Q99683 1374 aa15.75■□□□□ 0.11
HDAC4-216ENST00000544989 MRC1P22897 1456 aa15.74■□□□□ 0.11
HDAC4-216ENST00000544989 PRKAR2BP31323 418 aa15.74■□□□□ 0.11
HDAC4-216ENST00000544989 RC3H1Q5TC82 1133 aaKnown RBP15.74■□□□□ 0.11
HDAC4-216ENST00000544989 LINC00116Q8NCU8 138 aa15.74■□□□□ 0.11
HDAC4-216ENST00000544989 ARXQ96QS3 562 aa15.74■□□□□ 0.11
HDAC4-216ENST00000544989 COL23A1Q86Y22 540 aaPredicted RBP15.73■□□□□ 0.11
HDAC4-216ENST00000544989 LGR6Q9HBX8 967 aa15.73■□□□□ 0.11
HDAC4-216ENST00000544989 ADRA2BP18089 450 aa15.72■□□□□ 0.11
HDAC4-216ENST00000544989 TEFQ10587 303 aa15.72■□□□□ 0.11
HDAC4-216ENST00000544989 ITPK1Q13572 414 aa15.72■□□□□ 0.11
HDAC4-216ENST00000544989 SYT17Q9BSW7 474 aa15.72■□□□□ 0.11
HDAC4-216ENST00000544989 TUBGCP6Q96RT7 1819 aa15.72■□□□□ 0.11
HDAC4-216ENST00000544989 CNTNAP4Q9C0A0 1308 aa15.71■□□□□ 0.11
HDAC4-216ENST00000544989 ADAMTS7Q9UKP4 1686 aa15.71■□□□□ 0.11
HDAC4-216ENST00000544989 GNPATO15228 680 aa15.71■□□□□ 0.11
HDAC4-216ENST00000544989 PTCD1O75127 700 aaKnown RBP15.71■□□□□ 0.11
HDAC4-216ENST00000544989 RTCBQ9Y3I0 505 aaKnown RBP15.71■□□□□ 0.11
HDAC4-216ENST00000544989 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.7■□□□□ 0.1
HDAC4-216ENST00000544989 HTATSF1O43719 755 aaKnown RBP15.7■□□□□ 0.1
HDAC4-216ENST00000544989 TTC5Q8N0Z6 440 aa15.7■□□□□ 0.1
HDAC4-216ENST00000544989 VSIG10Q8N0Z9 540 aa15.7■□□□□ 0.1
HDAC4-216ENST00000544989 RTF1Q92541 710 aaKnown RBP15.7■□□□□ 0.1
HDAC4-216ENST00000544989 MYBBP1AQ9BQG0 1328 aaKnown RBP15.69■□□□□ 0.1
HDAC4-216ENST00000544989 TRAPPC3LQ5T215 181 aa15.69■□□□□ 0.1
HDAC4-216ENST00000544989 PHACTR3Q96KR7 559 aa15.69■□□□□ 0.1
HDAC4-216ENST00000544989 SLC4A9Q96Q91 983 aa15.69■□□□□ 0.1
HDAC4-216ENST00000544989 FHDC1Q9C0D6 1143 aaPredicted RBP15.69■□□□□ 0.1
HDAC4-216ENST00000544989 COL24A1Q17RW2 1714 aa15.68■□□□□ 0.1
HDAC4-216ENST00000544989 UBR3Q6ZT12 1888 aa15.68■□□□□ 0.1
HDAC4-216ENST00000544989 CEMIPQ8WUJ3 1361 aa15.68■□□□□ 0.1
HDAC4-216ENST00000544989 SENP3-EIF4A1A0A087X0R7 540 aa15.68■□□□□ 0.1
HDAC4-216ENST00000544989 PHF14O94880 888 aa15.68■□□□□ 0.1
HDAC4-216ENST00000544989 CICQ96RK0 1608 aaPredicted RBP15.68■□□□□ 0.1
HDAC4-216ENST00000544989 RPS6KA4O75676 772 aa15.67■□□□□ 0.1
HDAC4-216ENST00000544989 IL17REQ8NFR9 667 aa15.67■□□□□ 0.1
HDAC4-216ENST00000544989 CRKLP46109 303 aaKnown RBP15.66■□□□□ 0.1
HDAC4-216ENST00000544989 TEX13AQ9BXU3 409 aaPredicted RBP15.66■□□□□ 0.1
HDAC4-216ENST00000544989 MAPK8IP3Q9UPT6 1336 aa15.66■□□□□ 0.1
HDAC4-216ENST00000544989 SLC39A6Q13433 755 aa15.65■□□□□ 0.1
HDAC4-216ENST00000544989 VIRMAQ69YN4 1812 aaKnown RBP15.65■□□□□ 0.1
HDAC4-216ENST00000544989 COL5A3P25940 1745 aaPredicted RBP15.65■□□□□ 0.1
HDAC4-216ENST00000544989 STARD3NLO95772 234 aa15.64■□□□□ 0.09
HDAC4-216ENST00000544989 RFC4P35249 363 aa15.64■□□□□ 0.09
HDAC4-216ENST00000544989 MSL1Q68DK7 614 aa15.64■□□□□ 0.09
HDAC4-216ENST00000544989 ZNF790Q6PG37 636 aa15.64■□□□□ 0.09
HDAC4-216ENST00000544989 NLGN1Q8N2Q7 840 aa15.64■□□□□ 0.09
HDAC4-216ENST00000544989 BTBD11A6QL63 1104 aa15.63■□□□□ 0.09
HDAC4-216ENST00000544989 AMIGO3Q86WK7 504 aa15.63■□□□□ 0.09
HDAC4-216ENST00000544989 FMNL2Q96PY5 1086 aa15.63■□□□□ 0.09
HDAC4-216ENST00000544989 CCDC87Q9NVE4 849 aa15.63■□□□□ 0.09
HDAC4-216ENST00000544989 KCPQ6ZWJ8 1503 aa15.63■□□□□ 0.09
HDAC4-216ENST00000544989 DNAJC10Q8IXB1 793 aa15.62■□□□□ 0.09
HDAC4-216ENST00000544989 ARHGEF1Q92888 912 aaKnown RBP15.62■□□□□ 0.09
HDAC4-216ENST00000544989 PLEKHF1Q96S99 279 aa15.62■□□□□ 0.09
HDAC4-216ENST00000544989 PRKRIP1Q9H875 184 aaPredicted RBP15.62■□□□□ 0.09
HDAC4-216ENST00000544989 CD2APQ9Y5K6 639 aa15.62■□□□□ 0.09
HDAC4-216ENST00000544989 CYP19A1P11511 503 aaPredicted RBP15.61■□□□□ 0.09
HDAC4-216ENST00000544989 NFE2L2Q16236 605 aa15.61■□□□□ 0.09
HDAC4-216ENST00000544989 KLHL34Q8N239 644 aa15.61■□□□□ 0.09
HDAC4-216ENST00000544989 PNISRQ8TF01 805 aaKnown RBP15.61■□□□□ 0.09
HDAC4-216ENST00000544989 TJP1Q07157 1748 aa15.6■□□□□ 0.09
HDAC4-216ENST00000544989 WDR43Q15061 677 aaKnown RBP eCLIP15.6■□□□□ 0.09
HDAC4-216ENST00000544989 INTS5Q6P9B9 1019 aaKnown RBP15.6■□□□□ 0.09
HDAC4-216ENST00000544989 HEG1Q9ULI3 1381 aa15.6■□□□□ 0.09
HDAC4-216ENST00000544989 SIPA1L3O60292 1781 aaPredicted RBP15.59■□□□□ 0.09
HDAC4-216ENST00000544989 UBR2Q8IWV8 1755 aa15.59■□□□□ 0.09
HDAC4-216ENST00000544989 MYH14Q7Z406 1995 aaKnown RBP15.59■□□□□ 0.09
HDAC4-216ENST00000544989 ZNF316A6NFI3 1004 aaPredicted RBP15.59■□□□□ 0.09
HDAC4-216ENST00000544989 ZPR1O75312 459 aa15.59■□□□□ 0.09
HDAC4-216ENST00000544989 LMOD3Q0VAK6 560 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms