RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 KLHL40Q2TBA0 621 aa15.96■□□□□ 0.15
CPSF7-223ENST00000544669 HSP90AB4PQ58FF6 505 aa15.96■□□□□ 0.15
CPSF7-223ENST00000544669 ABTB2Q8N961 1025 aa15.96■□□□□ 0.15
CPSF7-223ENST00000544669 STAP2Q9UGK3 403 aa15.96■□□□□ 0.15
CPSF7-223ENST00000544669 C16orf71Q8IYS4 520 aaPredicted RBP15.96■□□□□ 0.14
CPSF7-223ENST00000544669 LRRC37A3O60309 1634 aa15.95■□□□□ 0.14
CPSF7-223ENST00000544669 SOX12O15370 315 aa15.95■□□□□ 0.14
CPSF7-223ENST00000544669 FOXO3O43524 673 aa15.94■□□□□ 0.14
CPSF7-223ENST00000544669 MX1P20591 662 aa15.94■□□□□ 0.14
CPSF7-223ENST00000544669 GZF1Q9H116 711 aaPredicted RBP15.94■□□□□ 0.14
CPSF7-223ENST00000544669 RTN4Q9NQC3 1192 aaKnown RBP15.94■□□□□ 0.14
CPSF7-223ENST00000544669 UBTFL1P0CB47 393 aaPredicted RBP15.94■□□□□ 0.14
CPSF7-223ENST00000544669 CEBPAP49715 358 aaPredicted RBP15.94■□□□□ 0.14
CPSF7-223ENST00000544669 IP6K1Q92551 441 aa15.94■□□□□ 0.14
CPSF7-223ENST00000544669 IL17RAQ96F46 866 aa15.94■□□□□ 0.14
CPSF7-223ENST00000544669 PIK3C2AO00443 1686 aa15.93■□□□□ 0.14
CPSF7-223ENST00000544669 CACNA1FO60840 1977 aa15.93■□□□□ 0.14
CPSF7-223ENST00000544669 G2E3Q7L622 706 aa15.93■□□□□ 0.14
CPSF7-223ENST00000544669 MIS18AQ9NYP9 233 aa15.93■□□□□ 0.14
CPSF7-223ENST00000544669 BAG4O95429 457 aaKnown RBP15.92■□□□□ 0.14
CPSF7-223ENST00000544669 AMOTQ4VCS5 1084 aa15.92■□□□□ 0.14
CPSF7-223ENST00000544669 PHF8Q9UPP1 1060 aa15.92■□□□□ 0.14
CPSF7-223ENST00000544669 CEP170BQ9Y4F5 1589 aaPredicted RBP15.92■□□□□ 0.14
CPSF7-223ENST00000544669 SMARCA5O60264 1052 aaPredicted RBP15.91■□□□□ 0.14
CPSF7-223ENST00000544669 CD2BP2O95400 341 aaKnown RBP15.91■□□□□ 0.14
CPSF7-223ENST00000544669 INTS4Q96HW7 963 aaKnown RBP15.91■□□□□ 0.14
CPSF7-223ENST00000544669 RBM42Q9BTD8 480 aaKnown RBP15.91■□□□□ 0.14
CPSF7-223ENST00000544669 SALL3Q9BXA9 1300 aa15.91■□□□□ 0.14
CPSF7-223ENST00000544669 F6X3S4 739 aa15.91■□□□□ 0.14
CPSF7-223ENST00000544669 HDGFL1Q5TGJ6 251 aa15.91■□□□□ 0.14
CPSF7-223ENST00000544669 ANKLE2Q86XL3 938 aa15.91■□□□□ 0.14
CPSF7-223ENST00000544669 IL17REQ8NFR9 667 aa15.91■□□□□ 0.14
CPSF7-223ENST00000544669 SSH3Q8TE77 659 aa15.91■□□□□ 0.14
CPSF7-223ENST00000544669 DDX49Q9Y6V7 483 aaKnown RBP15.91■□□□□ 0.14
CPSF7-223ENST00000544669 CEMIPQ8WUJ3 1361 aa15.9■□□□□ 0.14
CPSF7-223ENST00000544669 CYP2E1P05181 493 aaPredicted RBP15.9■□□□□ 0.14
CPSF7-223ENST00000544669 KCNA6P17658 529 aa15.9■□□□□ 0.14
CPSF7-223ENST00000544669 TRIM44Q96DX7 344 aaPredicted RBP15.9■□□□□ 0.14
CPSF7-223ENST00000544669 ESYT1Q9BSJ8 1104 aa15.9■□□□□ 0.14
CPSF7-223ENST00000544669 APBB1O00213 710 aa15.89■□□□□ 0.13
CPSF7-223ENST00000544669 PLEKHO1Q53GL0 409 aaPredicted RBP15.89■□□□□ 0.13
CPSF7-223ENST00000544669 OTUD7AQ8TE49 926 aaPredicted RBP15.89■□□□□ 0.13
CPSF7-223ENST00000544669 SSFA2P28290 1259 aa15.89■□□□□ 0.13
CPSF7-223ENST00000544669 OVOS2A0A0G2JMS6 1433 aa15.88■□□□□ 0.13
CPSF7-223ENST00000544669 NCAPD2Q15021 1401 aa15.88■□□□□ 0.13
CPSF7-223ENST00000544669 AKAP4Q5JQC9 854 aa15.88■□□□□ 0.13
CPSF7-223ENST00000544669 KIF1BPQ96EK5 621 aa15.88■□□□□ 0.13
CPSF7-223ENST00000544669 FER1L4A9Z1Z3 1794 aa15.88■□□□□ 0.13
CPSF7-223ENST00000544669 CCDC173Q0VFZ6 552 aa15.87■□□□□ 0.13
CPSF7-223ENST00000544669 KLHL34Q8N239 644 aa15.87■□□□□ 0.13
CPSF7-223ENST00000544669 USP44Q9H0E7 712 aa15.87■□□□□ 0.13
CPSF7-223ENST00000544669 EXOC6BQ9Y2D4 811 aa15.87■□□□□ 0.13
CPSF7-223ENST00000544669 NWD1Q149M9 1564 aa15.87■□□□□ 0.13
CPSF7-223ENST00000544669 TRIM6-TRIM34B2RNG4 842 aa15.87■□□□□ 0.13
CPSF7-223ENST00000544669 CHMLP26374 656 aa15.87■□□□□ 0.13
CPSF7-223ENST00000544669 CLCN1P35523 988 aa15.87■□□□□ 0.13
CPSF7-223ENST00000544669 ZNF445P59923 1031 aa15.87■□□□□ 0.13
CPSF7-223ENST00000544669 MBD3O95983 291 aa15.86■□□□□ 0.13
CPSF7-223ENST00000544669 PSME1Q06323 249 aa15.86■□□□□ 0.13
CPSF7-223ENST00000544669 TEFQ10587 303 aa15.86■□□□□ 0.13
CPSF7-223ENST00000544669 POLA2Q14181 598 aa15.86■□□□□ 0.13
CPSF7-223ENST00000544669 FOXD4L1Q9NU39 408 aa15.86■□□□□ 0.13
CPSF7-223ENST00000544669 LRRFIP2Q9Y608 721 aaKnown RBP15.86■□□□□ 0.13
CPSF7-223ENST00000544669 FAM208AQ9UK61 1670 aaKnown RBP15.86■□□□□ 0.13
CPSF7-223ENST00000544669 N4BP2Q86UW6 1770 aaPredicted RBP15.86■□□□□ 0.13
CPSF7-223ENST00000544669 PDIA4P13667 645 aaKnown RBP15.85■□□□□ 0.13
CPSF7-223ENST00000544669 NEK4P51957 841 aa15.85■□□□□ 0.13
CPSF7-223ENST00000544669 ERC1Q8IUD2 1116 aa15.85■□□□□ 0.13
CPSF7-223ENST00000544669 ALDH1L1O75891 902 aa15.84■□□□□ 0.13
CPSF7-223ENST00000544669 EIF4A1P60842 406 aaKnown RBP15.84■□□□□ 0.13
CPSF7-223ENST00000544669 CUL4AQ13619 759 aa15.84■□□□□ 0.13
CPSF7-223ENST00000544669 C14orf37Q86TY3 774 aa15.84■□□□□ 0.13
CPSF7-223ENST00000544669 CNTROBQ8N137 903 aa15.84■□□□□ 0.13
CPSF7-223ENST00000544669 DBF4Q9UBU7 674 aaPredicted RBP15.84■□□□□ 0.13
CPSF7-223ENST00000544669 TTC41PQ6P2S7 1318 aa15.84■□□□□ 0.13
CPSF7-223ENST00000544669 PNMA6EA0A0J9YXQ4 647 aa15.84■□□□□ 0.13
CPSF7-223ENST00000544669 RUFY2Q8WXA3 655 aa15.84■□□□□ 0.13
CPSF7-223ENST00000544669 DNAAF4Q8WXU2 420 aa15.84■□□□□ 0.13
CPSF7-223ENST00000544669 RILPL2Q969X0 211 aa15.84■□□□□ 0.13
CPSF7-223ENST00000544669 GPATCH3Q96I76 525 aa15.84■□□□□ 0.13
CPSF7-223ENST00000544669 C1orf141Q5JVX7 400 aa15.83■□□□□ 0.12
CPSF7-223ENST00000544669 MCTP1Q6DN14 999 aa15.83■□□□□ 0.12
CPSF7-223ENST00000544669 ANO2Q9NQ90 1003 aa15.83■□□□□ 0.12
CPSF7-223ENST00000544669 PHRF1Q9P1Y6 1649 aaKnown RBP15.83■□□□□ 0.12
CPSF7-223ENST00000544669 SURF6O75683 361 aaKnown RBP15.82■□□□□ 0.12
CPSF7-223ENST00000544669 MTX1Q13505 466 aa15.82■□□□□ 0.12
CPSF7-223ENST00000544669 SYAP1Q96A49 352 aaPredicted RBP15.82■□□□□ 0.12
CPSF7-223ENST00000544669 LTV1Q96GA3 475 aaPredicted RBP15.82■□□□□ 0.12
CPSF7-223ENST00000544669 LMTK3Q96Q04 1460 aa15.82■□□□□ 0.12
CPSF7-223ENST00000544669 HS1BP3Q53T59 392 aa15.82■□□□□ 0.12
CPSF7-223ENST00000544669 KIAA1211Q6ZU35 1233 aa15.82■□□□□ 0.12
CPSF7-223ENST00000544669 RHPN1Q8TCX5 695 aa15.82■□□□□ 0.12
CPSF7-223ENST00000544669 TMX3Q96JJ7 454 aa15.82■□□□□ 0.12
CPSF7-223ENST00000544669 LMBRD1Q9NUN5 540 aa15.82■□□□□ 0.12
CPSF7-223ENST00000544669 MED1Q15648 1581 aaPredicted RBP15.81■□□□□ 0.12
CPSF7-223ENST00000544669 USP42Q9H9J4 1324 aaKnown RBP15.81■□□□□ 0.12
CPSF7-223ENST00000544669 BTBD11A6QL63 1104 aa15.81■□□□□ 0.12
CPSF7-223ENST00000544669 NCLP19338 710 aaKnown RBP15.81■□□□□ 0.12
CPSF7-223ENST00000544669 NASPP49321 788 aaPredicted RBP15.81■□□□□ 0.12
CPSF7-223ENST00000544669 PPP1R42Q7Z4L9 355 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms