RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 GPBP1L1Q9HC44 474 aaPredicted RBP6.16□□□□□ -1.42
SNHG1-220ENST00000544550 THRAP3Q9Y2W1 955 aaKnown RBP6.16□□□□□ -1.42
SNHG1-220ENST00000544550 GTF3C3Q9Y5Q9 886 aa6.16□□□□□ -1.42
SNHG1-220ENST00000544550 PLEKHH1Q9ULM0 1364 aa6.16□□□□□ -1.42
SNHG1-220ENST00000544550 ABCA3Q99758 1704 aa6.16□□□□□ -1.42
SNHG1-220ENST00000544550 FMN2Q9NZ56 1722 aa6.16□□□□□ -1.42
SNHG1-220ENST00000544550 ANKARQ7Z5J8 1434 aa6.16□□□□□ -1.42
SNHG1-220ENST00000544550 CAMTA1Q9Y6Y1 1673 aa6.15□□□□□ -1.42
SNHG1-220ENST00000544550 TSR1Q2NL82 804 aaKnown RBP6.15□□□□□ -1.42
SNHG1-220ENST00000544550 FHDC1Q9C0D6 1143 aaPredicted RBP6.15□□□□□ -1.42
SNHG1-220ENST00000544550 KDM4CQ9H3R0 1056 aa6.15□□□□□ -1.42
SNHG1-220ENST00000544550 STRN4Q9NRL3 753 aa6.15□□□□□ -1.42
SNHG1-220ENST00000544550 EIF3AQ14152 1382 aaKnown RBP6.15□□□□□ -1.43
SNHG1-220ENST00000544550 ANKRD30BQ9BXX2 1392 aa6.15□□□□□ -1.43
SNHG1-220ENST00000544550 DLC1Q96QB1 1528 aa6.15□□□□□ -1.43
SNHG1-220ENST00000544550 KIF1BO60333 1816 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 ZBTB7AO95365 584 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 EVA1CP58658 441 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 AMHR2Q16671 573 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 TCP11L2Q8N4U5 519 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 ZNF454Q8N9F8 522 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 PMFBP1Q8TBY8 1022 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 ZDHHC16Q969W1 377 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 MTFR1LQ9H019 292 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 USP35Q9P2H5 1018 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 MAP3K5Q99683 1374 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 OVOS2A0A0G2JMS6 1433 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 OVOS2A0A0J9YW53 1432 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 OVOS2Q6IE36 1432 aa6.14□□□□□ -1.43
SNHG1-220ENST00000544550 YTHDC2Q9H6S0 1430 aaKnown RBP6.14□□□□□ -1.43
SNHG1-220ENST00000544550 KNDC1Q76NI1 1749 aa6.13□□□□□ -1.43
SNHG1-220ENST00000544550 GPR162Q16538 588 aa6.13□□□□□ -1.43
SNHG1-220ENST00000544550 C6orf132Q5T0Z8 1188 aa6.13□□□□□ -1.43
SNHG1-220ENST00000544550 TMEM132EQ6IEE7 984 aa6.13□□□□□ -1.43
SNHG1-220ENST00000544550 STK32BQ9NY57 414 aa6.13□□□□□ -1.43
SNHG1-220ENST00000544550 ADGRF5Q8IZF2 1346 aa6.13□□□□□ -1.43
SNHG1-220ENST00000544550 ACIN1Q9UKV3 1341 aaKnown RBP6.13□□□□□ -1.43
SNHG1-220ENST00000544550 KIAA0232Q92628 1395 aa6.13□□□□□ -1.43
SNHG1-220ENST00000544550 SSH2Q76I76 1423 aa6.13□□□□□ -1.43
SNHG1-220ENST00000544550 RGPD3A6NKT7 1758 aaPredicted RBP6.12□□□□□ -1.43
SNHG1-220ENST00000544550 PTPN5P54829 565 aa6.12□□□□□ -1.43
SNHG1-220ENST00000544550 DHX57Q6P158 1386 aaKnown RBP6.12□□□□□ -1.43
SNHG1-220ENST00000544550 RGPD4Q7Z3J3 1758 aa6.12□□□□□ -1.43
SNHG1-220ENST00000544550 ARXQ96QS3 562 aa6.12□□□□□ -1.43
SNHG1-220ENST00000544550 DAXXQ9UER7 740 aaPredicted RBP6.12□□□□□ -1.43
SNHG1-220ENST00000544550 CASZ1Q86V15 1759 aa6.11□□□□□ -1.43
SNHG1-220ENST00000544550 MYOM1P52179 1685 aa6.11□□□□□ -1.43
SNHG1-220ENST00000544550 PIK3C2GO75747 1445 aa6.11□□□□□ -1.43
SNHG1-220ENST00000544550 HSPA6P17066 643 aa6.11□□□□□ -1.43
SNHG1-220ENST00000544550 ITGAEP38570 1179 aa6.11□□□□□ -1.43
SNHG1-220ENST00000544550 CHRNA2Q15822 529 aa6.11□□□□□ -1.43
SNHG1-220ENST00000544550 SLC15A2Q16348 729 aa6.11□□□□□ -1.43
SNHG1-220ENST00000544550 NGDNQ8NEJ9 315 aaKnown RBP6.11□□□□□ -1.43
SNHG1-220ENST00000544550 ADAM33Q9BZ11 813 aa6.11□□□□□ -1.43
SNHG1-220ENST00000544550 POGKQ9P215 609 aa6.11□□□□□ -1.43
SNHG1-220ENST00000544550 PPLO60437 1756 aa6.11□□□□□ -1.43
SNHG1-220ENST00000544550 ATP7BP35670 1465 aa6.1□□□□□ -1.43
SNHG1-220ENST00000544550 PPP4R3BQ5MIZ7 849 aa6.1□□□□□ -1.43
SNHG1-220ENST00000544550 PARP9Q8IXQ6 854 aa6.1□□□□□ -1.43
SNHG1-220ENST00000544550 TTC13Q8NBP0 860 aa6.1□□□□□ -1.43
SNHG1-220ENST00000544550 PRAM1Q96QH2 718 aa6.1□□□□□ -1.43
SNHG1-220ENST00000544550 TRPM3Q9HCF6 1732 aaPredicted RBP6.1□□□□□ -1.43
SNHG1-220ENST00000544550 IFT172Q9UG01 1749 aa6.1□□□□□ -1.43
SNHG1-220ENST00000544550 ALS2Q96Q42 1657 aa6.1□□□□□ -1.43
SNHG1-220ENST00000544550 BCL9O00512 1426 aa6.09□□□□□ -1.43
SNHG1-220ENST00000544550 LOC105371045A0A1W2PR82 267 aa6.09□□□□□ -1.43
SNHG1-220ENST00000544550 GRIN3BO60391 1043 aa6.09□□□□□ -1.43
SNHG1-220ENST00000544550 ZC3H6P61129 1189 aaKnown RBP6.09□□□□□ -1.43
SNHG1-220ENST00000544550 DDB1Q16531 1140 aa6.09□□□□□ -1.43
SNHG1-220ENST00000544550 LARP1Q6PKG0 1096 aaKnown RBP6.09□□□□□ -1.43
SNHG1-220ENST00000544550 IL27Q8NEV9 243 aa6.09□□□□□ -1.43
SNHG1-220ENST00000544550 PDGFDQ9GZP0 370 aaPredicted RBP6.09□□□□□ -1.43
SNHG1-220ENST00000544550 C14orf93Q9H972 538 aaKnown RBP6.09□□□□□ -1.43
SNHG1-220ENST00000544550 RBM27Q9P2N5 1060 aaKnown RBP6.09□□□□□ -1.43
SNHG1-220ENST00000544550 TULP4Q9NRJ4 1543 aa6.09□□□□□ -1.44
SNHG1-220ENST00000544550 CPDO75976 1380 aa6.08□□□□□ -1.44
SNHG1-220ENST00000544550 AATKQ6ZMQ8 1374 aa6.08□□□□□ -1.44
SNHG1-220ENST00000544550 POLD1P28340 1107 aa6.08□□□□□ -1.44
SNHG1-220ENST00000544550 SAFB2Q14151 953 aaKnown RBP eCLIP6.08□□□□□ -1.44
SNHG1-220ENST00000544550 TXNRD1Q16881 649 aa6.08□□□□□ -1.44
SNHG1-220ENST00000544550 RGL3Q3MIN7 710 aa6.08□□□□□ -1.44
SNHG1-220ENST00000544550 PADI6Q6TGC4 694 aa6.08□□□□□ -1.44
SNHG1-220ENST00000544550 TMUB1Q9BVT8 246 aa6.08□□□□□ -1.44
SNHG1-220ENST00000544550 CDCA7Q9BWT1 371 aaPredicted RBP6.08□□□□□ -1.44
SNHG1-220ENST00000544550 FAM117AQ9C073 453 aa6.08□□□□□ -1.44
SNHG1-220ENST00000544550 BCL2L12Q9HB09 334 aa6.08□□□□□ -1.44
SNHG1-220ENST00000544550 CRB1P82279 1406 aa6.08□□□□□ -1.44
SNHG1-220ENST00000544550 GOLGA8CPA6NN73 597 aa6.07□□□□□ -1.44
SNHG1-220ENST00000544550 WASLO00401 505 aaPredicted RBP6.07□□□□□ -1.44
SNHG1-220ENST00000544550 DMRTA1Q5VZB9 504 aa6.07□□□□□ -1.44
SNHG1-220ENST00000544550 SLC16A10Q8TF71 515 aa6.07□□□□□ -1.44
SNHG1-220ENST00000544550 PHOX2BQ99453 314 aa6.07□□□□□ -1.44
SNHG1-220ENST00000544550 REPIN1Q9BWE0 567 aaKnown RBP6.07□□□□□ -1.44
SNHG1-220ENST00000544550 PARP4Q9UKK3 1724 aaKnown RBP6.07□□□□□ -1.44
SNHG1-220ENST00000544550 CRYBG1Q9Y4K1 1723 aa6.07□□□□□ -1.44
SNHG1-220ENST00000544550 SPATA31E1Q6ZUB1 1445 aa6.07□□□□□ -1.44
SNHG1-220ENST00000544550 CHD4Q14839 1912 aa6.06□□□□□ -1.44
SNHG1-220ENST00000544550 OATP04181 439 aa6.06□□□□□ -1.44
SNHG1-220ENST00000544550 PSEN2P49810 448 aa6.06□□□□□ -1.44
SNHG1-220ENST00000544550 PRSS12P56730 875 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms