RNA–Protein interactions for RNA: ENST00000543939.5

COPS7A-218, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 3

Gene COPS7A, Length 1,728 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-218ENST00000543939 PTPRCP08575 1304 aa25.21■■□□□ 1.63
COPS7A-218ENST00000543939 BTBD11A6QL63 1104 aa25.2■■□□□ 1.63
COPS7A-218ENST00000543939 SLC4A2P04920 1241 aa25.2■■□□□ 1.63
COPS7A-218ENST00000543939 IFNL2Q8IZJ0 200 aa25.2■■□□□ 1.63
COPS7A-218ENST00000543939 ZBTB40Q9NUA8 1239 aa25.2■■□□□ 1.63
COPS7A-218ENST00000543939 CCDC30Q5VVM6 783 aa25.2■■□□□ 1.62
COPS7A-218ENST00000543939 CYP27B1O15528 508 aa25.18■■□□□ 1.62
COPS7A-218ENST00000543939 TOM1O60784 492 aa25.18■■□□□ 1.62
COPS7A-218ENST00000543939 KCNQ3O43525 872 aa25.17■■□□□ 1.62
COPS7A-218ENST00000543939 EVA1CP58658 441 aa25.17■■□□□ 1.62
COPS7A-218ENST00000543939 LARP1Q6PKG0 1096 aaKnown RBP25.17■■□□□ 1.62
COPS7A-218ENST00000543939 STRN4Q9NRL3 753 aa25.17■■□□□ 1.62
COPS7A-218ENST00000543939 HOXB7P09629 217 aa25.17■■□□□ 1.62
COPS7A-218ENST00000543939 STK31Q9BXU1 1019 aa25.17■■□□□ 1.62
COPS7A-218ENST00000543939 MRC1P22897 1456 aa25.16■■□□□ 1.62
COPS7A-218ENST00000543939 ZBTB7BO15156 539 aaPredicted RBP25.16■■□□□ 1.62
COPS7A-218ENST00000543939 CHMP4BQ9H444 224 aaKnown RBP25.16■■□□□ 1.62
COPS7A-218ENST00000543939 INTS3Q68E01 1043 aaKnown RBP25.15■■□□□ 1.62
COPS7A-218ENST00000543939 G2E3Q7L622 706 aa25.15■■□□□ 1.62
COPS7A-218ENST00000543939 DCAF5Q96JK2 942 aa25.15■■□□□ 1.62
COPS7A-218ENST00000543939 RWDD1Q9H446 243 aaPredicted RBP25.15■■□□□ 1.62
COPS7A-218ENST00000543939 SLC52A2Q9HAB3 445 aa25.15■■□□□ 1.62
COPS7A-218ENST00000543939 SHANK3Q9BYB0 1731 aa25.14■■□□□ 1.62
COPS7A-218ENST00000543939 HEG1Q9ULI3 1381 aa25.14■■□□□ 1.61
COPS7A-218ENST00000543939 HSP90AB1P08238 724 aaKnown RBP25.14■■□□□ 1.61
COPS7A-218ENST00000543939 BTG4Q9NY30 223 aa25.14■■□□□ 1.61
COPS7A-218ENST00000543939 IL2RBP14784 551 aa25.13■■□□□ 1.61
COPS7A-218ENST00000543939 SKAP1Q86WV1 359 aa25.13■■□□□ 1.61
COPS7A-218ENST00000543939 HDGFL1Q5TGJ6 251 aa25.12■■□□□ 1.61
COPS7A-218ENST00000543939 ZCRB1Q8TBF4 217 aaKnown RBP25.12■■□□□ 1.61
COPS7A-218ENST00000543939 PIP4K2BP78356 416 aa25.11■■□□□ 1.61
COPS7A-218ENST00000543939 HDAC1Q13547 482 aaPredicted RBP25.11■■□□□ 1.61
COPS7A-218ENST00000543939 NECTIN2Q92692 538 aa25.11■■□□□ 1.61
COPS7A-218ENST00000543939 CHMP4AQ9BY43 222 aa25.11■■□□□ 1.61
COPS7A-218ENST00000543939 PCDH11XQ9BZA7 1347 aa25.11■■□□□ 1.61
COPS7A-218ENST00000543939 PCDH11YQ9BZA8 1340 aa25.11■■□□□ 1.61
COPS7A-218ENST00000543939 FLIIQ13045 1269 aa25.09■■□□□ 1.61
COPS7A-218ENST00000543939 PLCH1Q4KWH8 1693 aa25.08■■□□□ 1.61
COPS7A-218ENST00000543939 NFATC2IPQ8NCF5 419 aa25.08■■□□□ 1.61
COPS7A-218ENST00000543939 RBM19Q9Y4C8 960 aaKnown RBP25.08■■□□□ 1.61
COPS7A-218ENST00000543939 GIGYF1O75420 1035 aaPredicted RBP25.07■■□□□ 1.6
COPS7A-218ENST00000543939 N4BP2Q86UW6 1770 aaPredicted RBP25.07■■□□□ 1.6
COPS7A-218ENST00000543939 EIF2S2P20042 333 aaKnown RBP25.06■■□□□ 1.6
COPS7A-218ENST00000543939 NKX1-1Q15270 411 aaPredicted RBP25.06■■□□□ 1.6
COPS7A-218ENST00000543939 ZNF790Q6PG37 636 aa25.06■■□□□ 1.6
COPS7A-218ENST00000543939 UBAP1LF5GYI3 381 aa25.05■■□□□ 1.6
COPS7A-218ENST00000543939 F6X3S4 739 aa25.03■■□□□ 1.6
COPS7A-218ENST00000543939 SLC39A6Q13433 755 aa25.03■■□□□ 1.6
COPS7A-218ENST00000543939 FKBP5Q13451 457 aaPredicted RBP25.03■■□□□ 1.6
COPS7A-218ENST00000543939 NRAPQ86VF7 1730 aa25.03■■□□□ 1.6
COPS7A-218ENST00000543939 C5P01031 1676 aa25.03■■□□□ 1.6
COPS7A-218ENST00000543939 CCT4P50991 539 aaKnown RBP25.03■■□□□ 1.6
COPS7A-218ENST00000543939 DISP2A7MBM2 1401 aa25.02■■□□□ 1.6
COPS7A-218ENST00000543939 CABP4P57796 275 aa25.02■■□□□ 1.6
COPS7A-218ENST00000543939 CHPF2Q9P2E5 772 aa25.02■■□□□ 1.6
COPS7A-218ENST00000543939 USP35Q9P2H5 1018 aa25.02■■□□□ 1.6
COPS7A-218ENST00000543939 WNK3Q9BYP7 1800 aa25.02■■□□□ 1.6
COPS7A-218ENST00000543939 PXDNLA1KZ92 1463 aa25.01■■□□□ 1.59
COPS7A-218ENST00000543939 C1orf115Q9H7X2 142 aa25■■□□□ 1.59
COPS7A-218ENST00000543939 PHAXQ9H814 394 aaKnown RBP25■■□□□ 1.59
COPS7A-218ENST00000543939 ERVV-2B6SEH9 535 aa25■■□□□ 1.59
COPS7A-218ENST00000543939 SLC4A10Q6U841 1118 aa25■■□□□ 1.59
COPS7A-218ENST00000543939 SMC5Q8IY18 1101 aa25■■□□□ 1.59
COPS7A-218ENST00000543939 PDZRN3Q9UPQ7 1066 aa25■■□□□ 1.59
COPS7A-218ENST00000543939 PRAMEF22A3QJZ6 481 aa24.99■■□□□ 1.59
COPS7A-218ENST00000543939 ADAMTS2O95450 1211 aa24.99■■□□□ 1.59
COPS7A-218ENST00000543939 RGS3P49796 1198 aa24.99■■□□□ 1.59
COPS7A-218ENST00000543939 DBF4Q9UBU7 674 aaPredicted RBP24.99■■□□□ 1.59
COPS7A-218ENST00000543939 DDX54Q8TDD1 881 aaKnown RBP24.98■■□□□ 1.59
COPS7A-218ENST00000543939 NWD2Q9ULI1 1742 aa24.98■■□□□ 1.59
COPS7A-218ENST00000543939 ZNF496Q96IT1 587 aaPredicted RBP24.98■■□□□ 1.59
COPS7A-218ENST00000543939 TOGARAM1Q9Y4F4 1720 aa24.97■■□□□ 1.59
COPS7A-218ENST00000543939 SIRT2Q8IXJ6 389 aa24.97■■□□□ 1.59
COPS7A-218ENST00000543939 PAPPAQ13219 1627 aa24.97■■□□□ 1.59
COPS7A-218ENST00000543939 GLI3P10071 1580 aa24.96■■□□□ 1.59
COPS7A-218ENST00000543939 TTC5Q8N0Z6 440 aa24.96■■□□□ 1.59
COPS7A-218ENST00000543939 MEIS3Q99687 375 aa24.96■■□□□ 1.59
COPS7A-218ENST00000543939 UBR2Q8IWV8 1755 aa24.96■■□□□ 1.59
COPS7A-218ENST00000543939 AEBP2Q6ZN18 517 aaPredicted RBP24.95■■□□□ 1.59
COPS7A-218ENST00000543939 NUTM2BA6NNL0 878 aaPredicted RBP24.95■■□□□ 1.58
COPS7A-218ENST00000543939 NUTM2EB1AL46 878 aaPredicted RBP24.95■■□□□ 1.58
COPS7A-218ENST00000543939 PDE4AP27815 886 aa24.95■■□□□ 1.58
COPS7A-218ENST00000543939 NUTM2AQ8IVF1 878 aaPredicted RBP24.95■■□□□ 1.58
COPS7A-218ENST00000543939 ATP10DQ9P241 1426 aa24.95■■□□□ 1.58
COPS7A-218ENST00000543939 ANXA1P04083 346 aa24.94■■□□□ 1.58
COPS7A-218ENST00000543939 FMNL2Q96PY5 1086 aa24.94■■□□□ 1.58
COPS7A-218ENST00000543939 LAMB4A4D0S4 1761 aa24.93■■□□□ 1.58
COPS7A-218ENST00000543939 PROSER3Q2NL68 480 aa24.93■■□□□ 1.58
COPS7A-218ENST00000543939 SNRPA1P09661 255 aaKnown RBP24.92■■□□□ 1.58
COPS7A-218ENST00000543939 BACH2Q9BYV9 841 aa24.92■■□□□ 1.58
COPS7A-218ENST00000543939 HYPKQ9NX55 129 aa24.92■■□□□ 1.58
COPS7A-218ENST00000543939 SLIT2O94813 1529 aa24.92■■□□□ 1.58
COPS7A-218ENST00000543939 ANKRD44Q8N8A2 993 aa24.92■■□□□ 1.58
COPS7A-218ENST00000543939 DDX21Q9NR30 783 aaKnown RBP eCLIP24.92■■□□□ 1.58
COPS7A-218ENST00000543939 PDIA6Q15084 440 aa24.91■■□□□ 1.58
COPS7A-218ENST00000543939 RPAP2Q8IXW5 612 aaPredicted RBP24.91■■□□□ 1.58
COPS7A-218ENST00000543939 SPATA31A1Q5TZJ5 1347 aa24.91■■□□□ 1.58
COPS7A-218ENST00000543939 CERKQ8TCT0 537 aa24.9■■□□□ 1.58
COPS7A-218ENST00000543939 GCC1Q96CN9 775 aa24.9■■□□□ 1.58
COPS7A-218ENST00000543939 ADCY9O60503 1353 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms