RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 FSD2A1L4K1 749 aa22.44■■□□□ 1.18
HDAC4-215ENST00000543185 PLVAPQ9BX97 442 aa22.44■■□□□ 1.18
HDAC4-215ENST00000543185 DAAM2Q86T65 1068 aa22.44■■□□□ 1.18
HDAC4-215ENST00000543185 C16orf45Q96MC5 204 aaPredicted RBP22.44■■□□□ 1.18
HDAC4-215ENST00000543185 TTC14Q96N46 770 aa22.44■■□□□ 1.18
HDAC4-215ENST00000543185 TUBBP07437 444 aa22.44■■□□□ 1.18
HDAC4-215ENST00000543185 DDX46Q7L014 1031 aaKnown RBP22.43■■□□□ 1.18
HDAC4-215ENST00000543185 HS1BP3Q53T59 392 aa22.43■■□□□ 1.18
HDAC4-215ENST00000543185 IRX3P78415 501 aaPredicted RBP22.43■■□□□ 1.18
HDAC4-215ENST00000543185 WDR66Q8TBY9 1149 aa22.43■■□□□ 1.18
HDAC4-215ENST00000543185 WDR97A6NE52 1622 aa22.43■■□□□ 1.18
HDAC4-215ENST00000543185 SNW1Q13573 536 aaKnown RBP22.43■■□□□ 1.18
HDAC4-215ENST00000543185 CACNA2D4Q7Z3S7 1137 aa22.42■■□□□ 1.18
HDAC4-215ENST00000543185 RAB11FIP3O75154 756 aa22.42■■□□□ 1.18
HDAC4-215ENST00000543185 MSL1Q68DK7 614 aa22.42■■□□□ 1.18
HDAC4-215ENST00000543185 CETN1Q12798 172 aa22.42■■□□□ 1.18
HDAC4-215ENST00000543185 TIAM1Q13009 1591 aa22.42■■□□□ 1.18
HDAC4-215ENST00000543185 FERMT1Q9BQL6 677 aa22.42■■□□□ 1.18
HDAC4-215ENST00000543185 CCDC178Q5BJE1 867 aa22.42■■□□□ 1.18
HDAC4-215ENST00000543185 NCOA2Q15596 1464 aa22.42■■□□□ 1.18
HDAC4-215ENST00000543185 SPECC1Q5M775 1068 aa22.41■■□□□ 1.18
HDAC4-215ENST00000543185 KANK3Q6NY19 840 aa22.41■■□□□ 1.18
HDAC4-215ENST00000543185 GOPCQ9HD26 462 aa22.41■■□□□ 1.18
HDAC4-215ENST00000543185 HSF2BPO75031 334 aa22.41■■□□□ 1.18
HDAC4-215ENST00000543185 LMAN1P49257 510 aa22.41■■□□□ 1.18
HDAC4-215ENST00000543185 FERP16591 822 aa22.41■■□□□ 1.18
HDAC4-215ENST00000543185 CCDC141Q6ZP82 1450 aa22.41■■□□□ 1.18
HDAC4-215ENST00000543185 HMOX1P09601 288 aa22.4■■□□□ 1.18
HDAC4-215ENST00000543185 GTF2F1P35269 517 aaKnown RBP eCLIP22.4■■□□□ 1.183e-6■■■■□ 21.4
HDAC4-215ENST00000543185 SEC63Q9UGP8 760 aaKnown RBP22.4■■□□□ 1.18
HDAC4-215ENST00000543185 NUTM2DQ5VT03 806 aaPredicted RBP22.4■■□□□ 1.18
HDAC4-215ENST00000543185 RAI14Q9P0K7 980 aa22.4■■□□□ 1.18
HDAC4-215ENST00000543185 URI1O94763 535 aaPredicted RBP22.4■■□□□ 1.18
HDAC4-215ENST00000543185 HMGB2P26583 209 aaKnown RBP22.39■■□□□ 1.18
HDAC4-215ENST00000543185 TNIP1Q15025 636 aa22.39■■□□□ 1.18
HDAC4-215ENST00000543185 JAKMIP1Q96N16 626 aaKnown RBP22.39■■□□□ 1.18
HDAC4-215ENST00000543185 IPO4Q8TEX9 1081 aaKnown RBP22.39■■□□□ 1.17
HDAC4-215ENST00000543185 IKBKGQ9Y6K9 419 aa22.39■■□□□ 1.17
HDAC4-215ENST00000543185 GPRASP1Q5JY77 1395 aa22.39■■□□□ 1.17
HDAC4-215ENST00000543185 CEP135Q66GS9 1140 aa22.39■■□□□ 1.17
HDAC4-215ENST00000543185 ZHX3Q9H4I2 956 aa22.39■■□□□ 1.17
HDAC4-215ENST00000543185 CCDC172P0C7W6 258 aa22.38■■□□□ 1.17
HDAC4-215ENST00000543185 PPP2R1AP30153 589 aa22.38■■□□□ 1.17
HDAC4-215ENST00000543185 STK3Q13188 491 aa22.38■■□□□ 1.17
HDAC4-215ENST00000543185 CPSF2Q9P2I0 782 aaKnown RBP22.38■■□□□ 1.17
HDAC4-215ENST00000543185 SETSIPP0DME0 302 aa22.37■■□□□ 1.17
HDAC4-215ENST00000543185 GRIPAP1Q4V328 841 aa22.37■■□□□ 1.17
HDAC4-215ENST00000543185 SYTL4Q96C24 671 aaPredicted RBP22.37■■□□□ 1.17
HDAC4-215ENST00000543185 AIMP1Q12904 312 aaKnown RBP22.37■■□□□ 1.17
HDAC4-215ENST00000543185 DDX23Q9BUQ8 820 aaKnown RBP22.37■■□□□ 1.17
HDAC4-215ENST00000543185 MTHFSP49914 203 aa22.37■■□□□ 1.17
HDAC4-215ENST00000543185 A6NNZ2 444 aa22.37■■□□□ 1.17
HDAC4-215ENST00000543185 TUBB8Q3ZCM7 444 aa22.37■■□□□ 1.17
HDAC4-215ENST00000543185 PLEKHO1Q53GL0 409 aaPredicted RBP22.37■■□□□ 1.17
HDAC4-215ENST00000543185 CTAGE1Q96RT6 745 aa22.37■■□□□ 1.17
HDAC4-215ENST00000543185 CNNM1Q9NRU3 951 aa22.37■■□□□ 1.17
HDAC4-215ENST00000543185 UBE2HP62256 183 aa22.36■■□□□ 1.17
HDAC4-215ENST00000543185 ERBINQ96RT1 1412 aa22.36■■□□□ 1.17
HDAC4-215ENST00000543185 MAPK8IP2Q13387 824 aaPredicted RBP22.36■■□□□ 1.17
HDAC4-215ENST00000543185 CCDC155Q8N6L0 562 aa22.36■■□□□ 1.17
HDAC4-215ENST00000543185 SSR1P43307 286 aaKnown RBP22.36■■□□□ 1.17
HDAC4-215ENST00000543185 PRDM10Q9NQV6 1147 aa22.36■■□□□ 1.17
HDAC4-215ENST00000543185 RASAL2Q9UJF2 1139 aa22.36■■□□□ 1.17
HDAC4-215ENST00000543185 OPA1O60313 960 aa22.36■■□□□ 1.17
HDAC4-215ENST00000543185 SWAP70Q9UH65 585 aa22.36■■□□□ 1.17
HDAC4-215ENST00000543185 PIP4K2BP78356 416 aa22.35■■□□□ 1.17
HDAC4-215ENST00000543185 HLTFQ14527 1009 aaKnown RBP eCLIP22.35■■□□□ 1.17
HDAC4-215ENST00000543185 UBE4AQ14139 1066 aa22.35■■□□□ 1.17
HDAC4-215ENST00000543185 TRHP20396 242 aaPredicted RBP22.35■■□□□ 1.17
HDAC4-215ENST00000543185 LARP1Q6PKG0 1096 aaKnown RBP22.35■■□□□ 1.17
HDAC4-215ENST00000543185 RPAP2Q8IXW5 612 aaPredicted RBP22.35■■□□□ 1.17
HDAC4-215ENST00000543185 FAM135AQ9P2D6 1515 aa22.35■■□□□ 1.17
HDAC4-215ENST00000543185 PRPHP41219 470 aa22.34■■□□□ 1.17
HDAC4-215ENST00000543185 NUTM2FA1L443 756 aa22.34■■□□□ 1.17
HDAC4-215ENST00000543185 AACSQ86V21 672 aa22.34■■□□□ 1.17
HDAC4-215ENST00000543185 TDRD9Q8NDG6 1382 aaKnown RBP22.34■■□□□ 1.17
HDAC4-215ENST00000543185 CLCN1P35523 988 aa22.34■■□□□ 1.17
HDAC4-215ENST00000543185 RSRC1Q96IZ7 334 aaKnown RBP22.34■■□□□ 1.17
HDAC4-215ENST00000543185 TMEM266Q2M3C6 531 aa22.33■■□□□ 1.17
HDAC4-215ENST00000543185 CAMK4Q16566 473 aa22.33■■□□□ 1.17
HDAC4-215ENST00000543185 ABCC11Q96J66 1382 aa22.33■■□□□ 1.17
HDAC4-215ENST00000543185 ADCY5O95622 1261 aa22.33■■□□□ 1.16
HDAC4-215ENST00000543185 TDO2P48775 406 aa22.33■■□□□ 1.16
HDAC4-215ENST00000543185 TTC12Q9H892 705 aaPredicted RBP22.33■■□□□ 1.16
HDAC4-215ENST00000543185 ITSN2Q9NZM3 1697 aa22.33■■□□□ 1.16
HDAC4-215ENST00000543185 KLHL40Q2TBA0 621 aa22.32■■□□□ 1.16
HDAC4-215ENST00000543185 TSNARE1Q96NA8 513 aa22.32■■□□□ 1.16
HDAC4-215ENST00000543185 HDGFL1Q5TGJ6 251 aa22.32■■□□□ 1.16
HDAC4-215ENST00000543185 PPP4R3AQ6IN85 833 aa22.32■■□□□ 1.16
HDAC4-215ENST00000543185 HMGB1P1B2RPK0 211 aaPredicted RBP22.32■■□□□ 1.16
HDAC4-215ENST00000543185 AMPD3Q01432 767 aa22.32■■□□□ 1.16
HDAC4-215ENST00000543185 GLRX3O76003 335 aaKnown RBP22.32■■□□□ 1.16
HDAC4-215ENST00000543185 XPCQ01831 940 aaPredicted RBP22.32■■□□□ 1.16
HDAC4-215ENST00000543185 CCDC94Q9BW85 323 aaPredicted RBP22.32■■□□□ 1.16
HDAC4-215ENST00000543185 GAPVD1Q14C86 1478 aa22.31■■□□□ 1.16
HDAC4-215ENST00000543185 NUP133Q8WUM0 1156 aa22.31■■□□□ 1.16
HDAC4-215ENST00000543185 ANKRD30BQ9BXX2 1392 aa22.31■■□□□ 1.16
HDAC4-215ENST00000543185 SLC4A2P04920 1241 aa22.31■■□□□ 1.16
HDAC4-215ENST00000543185 MAATS1Q7Z4T9 603 aa22.31■■□□□ 1.16
HDAC4-215ENST00000543185 CWC27Q6UX04 472 aaKnown RBP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms